IVF0005696 (gene) Melon (IVF77) v1

Overview
NameIVF0005696
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLate embryogenesis abundant protein
Locationchr01: 32083691 .. 32084066 (-)
RNA-Seq ExpressionIVF0005696
SyntenyIVF0005696
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAAGGTTACTGGAAATAGTCTTTACTTTATAAGGTCGATCCTTCTCGTGCAGGTTTTATGTATTTAATTCTCGCTATCGTTCTTTGTGTATGTTTCTTTTGTGCTCTTGTCTAATTTAGCAATGTAATAGCAGGCGAATGAGCTCTTCGATTGCATCTGAGCAACTTAAGGCACAAACAACTGCGTCAATGGTGGTTAGGAAGGTGAAGGCAGCTGTGGAAACGAGCTGTTATGATAATGAGGTAGTTGAACAGAAGAAGACGTTTTGGATGAAAGATCCTAAGAGTGGAAACTGGATTCCCGAGAATCATTTTGAAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTGGCTAAACCTAAGATTTAA

mRNA sequence

ATGACTAAGGTTACTGGAAATAGTCTTTACTTTATAAGGCGAATGAGCTCTTCGATTGCATCTGAGCAACTTAAGGCACAAACAACTGCGTCAATGGTGGTTAGGAAGGTGAAGGCAGCTGTGGAAACGAGCTGTTATGATAATGAGGTAGTTGAACAGAAGAAGACGTTTTGGATGAAAGATCCTAAGAGTGGAAACTGGATTCCCGAGAATCATTTTGAAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTGGCTAAACCTAAGATTTAA

Coding sequence (CDS)

ATGACTAAGGTTACTGGAAATAGTCTTTACTTTATAAGGCGAATGAGCTCTTCGATTGCATCTGAGCAACTTAAGGCACAAACAACTGCGTCAATGGTGGTTAGGAAGGTGAAGGCAGCTGTGGAAACGAGCTGTTATGATAATGAGGTAGTTGAACAGAAGAAGACGTTTTGGATGAAAGATCCTAAGAGTGGAAACTGGATTCCCGAGAATCATTTTGAAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTGGCTAAACCTAAGATTTAA

Protein sequence

MTKVTGNSLYFIRRMSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFEEIDVVELREKLLAKPKI
Homology
BLAST of IVF0005696 vs. ExPASy TrEMBL
Match: A0A0A0K7L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.6e-39
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 0

Query: 1  MTKVTGNSLYFIRRMSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMK 60
          M KVTGNSLYFIRRMSSS+ASEQLKAQTTASMVVRKVKAAVET  YDNEVVEQKKTFWMK
Sbjct: 1  MAKVTGNSLYFIRRMSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60

Query: 61 DPKSGNWIPENHFEEIDVVELREKLLAKPK 91
          DPKSGNWIPENHFEE+DVVELREKLLAKPK
Sbjct: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPK 90

BLAST of IVF0005696 vs. ExPASy TrEMBL
Match: A0A5D3BWU2 (Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001640 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.4e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 15 MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 74
          MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLAKPKI 92
          EIDVVELREKLLAKPKI
Sbjct: 61 EIDVVELREKLLAKPKI 77

BLAST of IVF0005696 vs. ExPASy TrEMBL
Match: A0A6J1B6Z6 (uncharacterized protein LOC110424687 OS=Herrania umbratica OX=108875 GN=LOC110424687 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1  MTKVTGNSLYFIRRMSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMK 60
          M +++  S   + R S ++A+E +K Q  AS++        E       + EQK+TFWM+
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVMRNATDLRTEV------LAEQKETFWMR 60

Query: 61 DPKSGNWIPENHFEEIDVVELREKLLAK 89
          DPK+GNWIPENHF +IDVVELREK L+K
Sbjct: 61 DPKTGNWIPENHFGDIDVVELREKFLSK 82

BLAST of IVF0005696 vs. ExPASy TrEMBL
Match: A0A061G6G1 (Senescence-associated gene 21, putative OS=Theobroma cacao OX=3641 GN=TCM_016756 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.3e-12
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 1  MTKVTGNSLYFIRRMSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMK 60
          M +++  S   + R S ++A+E +K Q  AS++        E       + EQK+TFWM+
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVMRNATDLRAEV------LAEQKETFWMR 60

Query: 61 DPKSGNWIPENHFEEIDVVELREKLLAK 89
          DPK+GNWIPENHF +IDV ELREK L+K
Sbjct: 61 DPKTGNWIPENHFGDIDVAELREKFLSK 82

BLAST of IVF0005696 vs. ExPASy TrEMBL
Match: A0A061GBY1 (Senescence-associated gene 21, putative OS=Theobroma cacao OX=3641 GN=TCM_029240 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.9e-12
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 1  MTKVTGNSLYFIRRMSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMK 60
          M +++  S   + R S ++A+E +K Q  AS+         E       + EQK+TFWM+
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVTRNATDLRAEV------LAEQKETFWMR 60

Query: 61 DPKSGNWIPENHFEEIDVVELREKLLAK 89
          DPK+GNWIPENHF +IDV ELREK L+K
Sbjct: 61 DPKTGNWIPENHFGDIDVAELREKFLSK 82

BLAST of IVF0005696 vs. NCBI nr
Match: KAA0059359.1 (putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1 putative Senescence-associated protein 21 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 4.98e-47
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 15 MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 74
          MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLAKPKI 91
          EIDVVELREKLLAKPKI
Sbjct: 61 EIDVVELREKLLAKPKI 77

BLAST of IVF0005696 vs. NCBI nr
Match: KAE8646489.1 (hypothetical protein Csa_015817 [Cucumis sativus])

HSP 1 Score: 145 bits (366), Expect = 2.42e-43
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 0

Query: 15 MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 74
          MSSS+ASEQLKAQTTASMVVRKVKAAVET  YDNEVVEQKKTFWMKDPKSGNWIPENHFE
Sbjct: 1  MSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLAKPK 90
          E+DVVELREKLLAKPK
Sbjct: 61 EMDVVELREKLLAKPK 76

BLAST of IVF0005696 vs. NCBI nr
Match: KAG6575415.1 (hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127 bits (319), Expect = 5.54e-36
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 0

Query: 1  MTKVTGNSLYFIRRMSSSIASEQLKAQTTASMVVRKVKAAVETSCYDN-EVVEQKKTFWM 60
          M K+TGN +YFIRR+SS +ASEQLKA+ TA M V+ V A VETS  D+ + VEQK  FWM
Sbjct: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60

Query: 61 KDPKSGNWIPENHFEEIDVVELREKLLAKPK 90
          KDPKSGNWIPENHF EIDVVELREKLL+K K
Sbjct: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTK 91

BLAST of IVF0005696 vs. NCBI nr
Match: XP_022843012.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea var. sylvestris] >CAA3012453.1 SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea])

HSP 1 Score: 87.8 bits (216), Expect = 2.02e-20
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 0

Query: 1  MTKVTGNSLYFIRRMSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMK 60
          M K + NSL  + R  S++A+E  K QTT S V+++V  +V           +K  FWMK
Sbjct: 1  MAKFSLNSLLLLSRRESTVAAEITKTQTTTSSVIKEVADSV-----------RKDVFWMK 60

Query: 61 DPKSGNWIPENHFEEIDVVELREKLLAK 88
          DPK+GNWIPE HFE+IDV ELREKLL+K
Sbjct: 61 DPKTGNWIPETHFEQIDVAELREKLLSK 77

BLAST of IVF0005696 vs. NCBI nr
Match: CAA3012452.1 (SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea])

HSP 1 Score: 85.9 bits (211), Expect = 1.13e-19
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 1  MTKVTGNSLYFIRRMSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMK 60
          M K + NSL  +RR  S++A+E  K QTT S V+++V  +V           +K  FWMK
Sbjct: 1  MAKFSLNSLLLLRR-ESTVAAEITKTQTTTSSVIKEVADSV-----------RKDVFWMK 60

Query: 61 DPKSGNWIPENHFEEIDVVELREKLLAK 88
          DPK+GNWIPE HFE+IDV ELREKLL+K
Sbjct: 61 DPKTGNWIPETHFEQIDVAELREKLLSK 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7L48.6e-3994.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1[more]
A0A5D3BWU26.4e-34100.00Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A6J1B6Z61.8e-1246.59uncharacterized protein LOC110424687 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
A0A061G6G15.3e-1245.45Senescence-associated gene 21, putative OS=Theobroma cacao OX=3641 GN=TCM_016756... [more]
A0A061GBY16.9e-1245.45Senescence-associated gene 21, putative OS=Theobroma cacao OX=3641 GN=TCM_029240... [more]
Match NameE-valueIdentityDescription
KAA0059359.14.98e-47100.00putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1... [more]
KAE8646489.12.42e-4394.74hypothetical protein Csa_015817 [Cucumis sativus][more]
KAG6575415.15.54e-3671.43hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022843012.12.02e-2051.14protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea var. sy... [more]
CAA3012452.11.13e-1952.27SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPFAMPF03242LEA_3coord: 20..86
e-value: 3.3E-14
score: 53.4
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPANTHERPTHR33509LATE EMBRYOGENIS ABUNDANT PROTEIN 2-RELATEDcoord: 5..89
NoneNo IPR availablePANTHERPTHR33509:SF21OS02G0564600 PROTEINcoord: 5..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005696.2IVF0005696.2mRNA