IVF0005232 (gene) Melon (IVF77) v1

Overview


Name	IVF0005232
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA polymerase II-associated protein 3 isoform X1
Location	chr05: 22713365 .. 22718915 (+)
RNA-Seq Expression	IVF0005232
Synteny	IVF0005232

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATTCCTCCGGCAAGCACGGCCGCGATCACCCTCTGGTATTCCCATTTTCTCTCAACCTGCTCTCTAGTGTAGTTCAGACATTGAACACTTTCTTACCCCGTTGCTTGAAAAACGAGGAGAAATATATAGTTTGTAGCTTTGAGTCGAGTTTCCAATTTTTGTGTATTTTTCATTGTTTGTGGAAATGAAGCGGGCTGGCGATGTATGCAACTCCCCTGTCTATTTCCTCGTGTTTACTGGATGTTGGAATTCGGTGGGGTTTGATGATGTAAAGTTCTGTTCACTTGCATTGAAGTGATTGATGGGGTGAATGTATTGAAATAGGGATTAGAAATTGATATCTGAAATCATTGTTGTTGGTGTGTTAAGTTAAGTTAGATGCTGGCTGTGTTTGTTGGCTTTTCTTATTGAGTTGTATGTGTTTTGGACGCATTCTTTTTCTCCAGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAAGTCTCATTTAAGGGAAAGACAAGAAACTGAAGCCACAGGCCATTGGAAAAGAAAAGGAGGTATTAACTCTATCAAATTTTCCGTTGCACAGTGAACTGCACATTTTAAAAACAAGAAACTACTGTCTCGGATGCCATTATTTACAGTGGTTTATGTTTTGAAGAAAAACCTGGTGCTAATTTTTCAATTGTGCATGCATTGATAATAACTTTTATACTCTCTTATTGAAGTTGGCTTTGTGCATGATAGAGATGTTCTGGAGAATAGTGTTGTTACATTTTTTGATAAATAATATTAGTATTATTTGAGGGTCACCTTAAGTAATGTCATAGCTAACCAGGATAGAAGGCAGACAGAAAAAGCTTCAGCAGCAGATTACTTGAAGCAATATGATGCGGTTAACCGTCTATCAAGAAATTTTCAGACTGAACAGAGTTTTGTTGATGCTGCTTCAGAGAAAGAACAGGTAGATTGTGTTCTTTTGCTCATGTTTATATGATGGAGAGATAATTGGTGTAGCCATGAAGGGCCTCGACTCCTGACTGCATGTGTGTATGATATATCTTCGTATTCCAGGGTAATGAGTATTTTAAGCAAAAGAAGTTCAAAGAAGCCATTGACTGCTATTCAAGAAGTATTGCTTTGTCCCCAACAGCTGTAGCCTTTGCAAATAGGGCTATGGCCTACCTAAAAATCAGGAGGCAAGTTTCAGTCCATAGATTCTAAGCTTTCCTTCATTTAGATGGATATGTATGGGATCTGTTTATGATGTTCCTTGAAAATAGGTCTTTGCTTCTCGCTTTCTGTCACTTACATTTCTTGAAATGAATTAATACACCTATGTCTCTAAATAGTGCTCTTGATGAGGCAAGCTATGAGTCGATGACTATTAAATGTGTTAACATTGTTGATTTCTTTGTTATCCTCTTGTTTCCACCTTCCTTGAGTCAGATTTCAGGAGGCTGAGGATGACTGTACAGAGGCCTTAAATTTAGATGATCGGTACATCAAAGCATACTCGCGCAGAGCAACAGCTAGAAAGGAACTTGGGAAGGCTAAAGAGGCCTTGGAGGGTACAAAATTAATCACTTCAATTGCATGTGGATCTTTTTGTGATTTTTATTTGACTGATGTATTTGACTGATTGCAGATGCTGAATTTGCCCAGAGATTGGAGCCTAACAACCAGGAGATCAAGAAGCAGCATGCTGATCTCAGAGCTTTTGTTGGGAAGGTAAGTTTAGCATTAATATTTAAGATGATTTTTGTTAAATCTGGATCTCTCTTGAACTATTTACTGGTGAATGTGGGAGACAAAGTTATGATATTTCAAATGTGTTCCGTTTGCAATACGATTTCTTTAATCCTTCTTGTACATGTATACATATCGCAGGCAATTCTTGAGAAGGCATCTGGTGCTTCAAGAAGCTCCCCCAAAGATAAGAAGATGCTTAAAAAATCAGACTCTGATGCAAAAATTCAGGACATCCCTCCTGTCTCTAGCAGCACATCAAGGACTGGATTATTGGCAGCTCGAGAACGTGTTGAGGTAGAGGTTTCTAATTTTTTAATGCCCATGGTATCCTGTATTTTCTTTTAAAACAAATTTAGTAGGGTAGTTGCCCATGTGAATGAGGTGCTTCTAAATGGATCAAAACAGACAGACAAATGAAAATGATGTCCTGTAACTTTTCAGTGAAGATCCAACCGGTCTATACTCTTAATAATTTATTCAACAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTCTCAAGTTTTCTAAAAACTATATTTTGCTATAGTATAAAACAATACTAATGTATTGCTACTTAATTTATAGCCCCCTTGTTCTGTTCCTTTTTGTAGGACTGTGTAGTGTAGTCTATTTGTTTGTTGAGTACTCACTGGGGAGAAAATTTGCTGATAATTAATTACTTTTACTGCTTATATCTTGACCGTGGTGTCCTTTTCTGTATTTGTATTAAGTTTCTTCCCTTAAATTGGCTGAATACGATGGGGCAACCCCCACCTCCCACCCAAGATTTCCTGTAGAGAATTGTAGTGCATGTTTACCCCACCCCCTGGTAATGAATTTAAAGATGATATTTCTTATTCTGAAGCTGGGTGTCAGCCTTATGGTGTTTGAGGCTTTTGGATTCTGTTCTTAGGAAAATGGTGGGGAAAATGCTGTCAAGACATCAGCACGTGTAGAAGAAAATGAGGACATAAGTACAAGAGCTGAAATCGCTTGCAAAAAGTAGCAACAAATGGTTTTCACAAAGACTCAAGTTCATATTTGTGGGCATTGGAGGTCTCTTAAGATCCATTTGAACTCTATTTTCTGCGTTGTACACTGCCTTTTTATTGATGGTTCCCATTTTTATGTTAGTTAAGTATATACCATTTTTTGTTCCAAAGAAACACAAGCAAGATGCTGCAATAGTTTCTTCTTTGTTAACAATTGCAGAATTCATCTTTAAAATGTCATTGAAATCAAATAGAAGCTTGCCTAAGTTCCTATTTAGGCTATTCCCTTCACATCCTGTGCTTCTGCAGCTCATTCTATAACTCTTGCTTTAAACATTCTCTACTCAGAAATGAAAGGGTCGATGAAGTTATCATGATTATATTGACCTTTTATAAATAAGCCTGTGATATTTGATGAGAGGTTCAATATCTTAACGAGTTCACATTCTGATCTTCAATTTTTTTTCAAGGCATGTTTGAATAGAGAATTAGACTATTGTTGTTCGAGTCCTTGAAGAGGCTTAGGTCGATTTTGACCTTGCTTGAACAAGAAATGTTCTATAAATTGTACAATCGTGTCCTTGAGTTCTGAAGAGACTTGGGTTGATTATTAAAGGGTGACTTAAGTAAGGCCCTCGATTGGTAGGCTTGAAACCCTAAACCTTAAACTCTAAACCAAAGAGCTCTATCAAGCCTATCTATTCACTGAGTAGGAAACTTCTAGCTCTAAAATCAACTGATGTAGGCCAGATATATCATATACTTGATTCTGTCACAAGCTATGCAAATGAGACTCATTGTCAACCGTACACTTAGGAATGAGGACTAGGAATAAGAGTGGTCCTTTTCAGCTTTCTTTGAGGGATTATTTTAAAGGTAATCTCTAATGACAACTTATGAAGAAGCTCAAGCCTTGTTCAAGAAAGACCCAAAAGCCAAAAGATCACCTTCATAATTAGTTGAATTGAAGCCCATCCATCCAAAGTTCTAAAGTTCCAAAGTAGGGACCTTAAATCATAGGGAGGTAAAAGGCTTAATTTGTGAACCATGTTGTCAGCTCATGCACAAGGATACCATAGCCTATTCCCTATGTATCTCTGCCACTAATTCTTTCTGATACAATGATGTCTAAATCCTTTTGTTTTCATACGTATCCACTCTCCTGCCAATATTTTTTACAGAGAGATCATCTTCCGAGAAAGCCGGAACTGAAGGCATCAGTGCAAGAACTTGCTTCTCAAGCAGCTTCCAGAAGCATGGTTGAAGCTGCAAAAAACATTATAGCCCCAACTACTGCCTATCAATTCGAAGTTTCTTGGAGAGGATTCTCTGATGATCAAGCATTGCAGGCTTGTCTTTTAAAGGTATCTAATCTAATATAGGCAGACTGAGACTATGCTGTTCCTGGTGCTGTCTGCTGTGTTCATTTGTCCATCCAAGATAATATAAACATATGTAGTTGCTCAAAGATAATATAAACATATGTAGTTGGCTATATATAAAAATTGTTTGATAAATATTAGAAGCTTGCTGCCATTTTTATTTGTTTTATAATTTTAACGGAATTTTTTTTCTTATTAGACCATCTCTCCAGCCAAGTTGCCTCAGATATTCAAAAATGCATTAACCGCTCCAATTTTAATAGACATTGTCAAGTGTGTGGCTACATTTTTCACGTAAGTTGAAAATTTCTAACTTGTCCTAGGAACATTTAGATTATGATTTAAAACATCCATGGTTAATAGACTGTACTGGATGATCATTTTGCAGTGAAGAACCGGCTTTGGCCATCAGTTTTTTAGAAAATTTAGTCAAAGTCCCGAGGTTCAGCATACTGATGATGTGTCTTTCATCCTCTGAAAAGTTCGGTAAGTTGTAGAACCTTCATTTAGTATTTACTTTTTTCCTATGTTTCTAACCTTCTTGATTGAAAGTTTAGCATCAACATTTGCAACCAAATTTGTTAGGTAAAAAAATTGGCTAAGATTAATTGAATGTATTGTACTTACTATGTCCTTAAACAACATAGGCATTCACTCTGAAGCCTTCTGGTCAATTTACTCCTTCTCTGATGTATGTCAATTTGATATTGTTTATACCTTCGTGGGTGGACTCCTTTCTTTTGCGTTTGTTTCTTTCTTTCCTTTATTTTCCTCTTTTTTTCCTTTCCTTTTATTTTCTTTTTTTCTTTTTTTTTTTTCATAATCATTTTCTCAAATAAGAAAAAGAAAAACAATATCCTGTGTAGCACGGGGATGCTTCAGAACGAATATGTGCAGCAGACTTATTGAGTCATATTTGAGCTGGGAATTTAGAATACCCCTTTATTGTCTTGTCATCAGCCAGTATCCTGATCTTGAAGAAGTTATCTACATGTCTGAGTTCTAGCTTCTATCTCTATTTAAAACCAAATTTAAATATAGGGTGAAGATGGTAAGCATGAAAAATATTCACTGTTGAGGAGGTGAATACAAAATGCTATAATTCATATTTTAATGGATAAATTTATAGAGGAACTTGGATTTTATAAATCTTCCTGATGTTTCAGCTGGACTTTGAGTTCCGACTTGAAGACCTTATATTTTGTTAGGAACTGAAATGTATATCTGGATTGTCTACCCAAATAACAGCAGGGAATCTAAGGGCTTATCATAGCAAAATGTTTTGTTTATTCGTACTAATTTTAAAGCGCTTTGTGAAACAGATCTCCTCAAGATTTGGGATGAAGTATTTTGTGATGAGGCTGTTCCAATTGAGTATGCAGAAATGCTCGACAGCTTGCGTTCAAAGTACTTTCTTAAACAATGA

mRNA sequence

ATGGCCGATTCCTCCGGCAAGCACGGCCGCGATCACCCTCTGGATAGAAGGCAGACAGAAAAAGCTTCAGCAGCAGATTACTTGAAGCAATATGATGCGGTTAACCGTCTATCAAGAAATTTTCAGACTGAACAGAGTTTTGTTGATGCTGCTTCAGAGAAAGAACAGGGTAATGAGTATTTTAAGCAAAAGAAGTTCAAAGAAGCCATTGACTGCTATTCAAGAAGTATTGCTTTGTCCCCAACAGCTGTAGCCTTTGCAAATAGGGCTATGGCCTACCTAAAAATCAGGAGATTTCAGGAGGCTGAGGATGACTGTACAGAGGCCTTAAATTTAGATGATCGGTACATCAAAGCATACTCGCGCAGAGCAACAGCTAGAAAGGAACTTGGGAAGGCTAAAGAGGCCTTGGAGGATGCTGAATTTGCCCAGAGATTGGAGCCTAACAACCAGGAGATCAAGAAGCAGCATGCTGATCTCAGAGCTTTTGTTGGGAAGGCAATTCTTGAGAAGGCATCTGGTGCTTCAAGAAGCTCCCCCAAAGATAAGAAGATGCTTAAAAAATCAGACTCTGATGCAAAAATTCAGGACATCCCTCCTGTCTCTAGCAGCACATCAAGGACTGGATTATTGGCAGCTCGAGAACGTGTTGAGAGAGATCATCTTCCGAGAAAGCCGGAACTGAAGGCATCAGTGCAAGAACTTGCTTCTCAAGCAGCTTCCAGAAGCATGGTTGAAGCTGCAAAAAACATTATAGCCCCAACTACTGCCTATCAATTCGAAGTTTCTTGGAGAGGATTCTCTGATGATCAAGCATTGCAGGCTTGTCTTTTAAAGACCATCTCTCCAGCCAAGTTGCCTCAGATATTCAAAAATGCATTAACCGCTCCAATTTTAATAGACATTGTCAAGTGTGTGGCTACATTTTTCACTGAAGAACCGGCTTTGGCCATCAGTTTTTTAGAAAATTTAGTCAAAGTCCCGAGGTTCAGCATACTGATGATGTGTCTTTCATCCTCTGAAAAGTTCGATCTCCTCAAGATTTGGGATGAAGTATTTTGTGATGAGGCTGTTCCAATTGAGTATGCAGAAATGCTCGACAGCTTGCGTTCAAAGTACTTTCTTAAACAATGA

Coding sequence (CDS)

ATGGCCGATTCCTCCGGCAAGCACGGCCGCGATCACCCTCTGGATAGAAGGCAGACAGAAAAAGCTTCAGCAGCAGATTACTTGAAGCAATATGATGCGGTTAACCGTCTATCAAGAAATTTTCAGACTGAACAGAGTTTTGTTGATGCTGCTTCAGAGAAAGAACAGGGTAATGAGTATTTTAAGCAAAAGAAGTTCAAAGAAGCCATTGACTGCTATTCAAGAAGTATTGCTTTGTCCCCAACAGCTGTAGCCTTTGCAAATAGGGCTATGGCCTACCTAAAAATCAGGAGATTTCAGGAGGCTGAGGATGACTGTACAGAGGCCTTAAATTTAGATGATCGGTACATCAAAGCATACTCGCGCAGAGCAACAGCTAGAAAGGAACTTGGGAAGGCTAAAGAGGCCTTGGAGGATGCTGAATTTGCCCAGAGATTGGAGCCTAACAACCAGGAGATCAAGAAGCAGCATGCTGATCTCAGAGCTTTTGTTGGGAAGGCAATTCTTGAGAAGGCATCTGGTGCTTCAAGAAGCTCCCCCAAAGATAAGAAGATGCTTAAAAAATCAGACTCTGATGCAAAAATTCAGGACATCCCTCCTGTCTCTAGCAGCACATCAAGGACTGGATTATTGGCAGCTCGAGAACGTGTTGAGAGAGATCATCTTCCGAGAAAGCCGGAACTGAAGGCATCAGTGCAAGAACTTGCTTCTCAAGCAGCTTCCAGAAGCATGGTTGAAGCTGCAAAAAACATTATAGCCCCAACTACTGCCTATCAATTCGAAGTTTCTTGGAGAGGATTCTCTGATGATCAAGCATTGCAGGCTTGTCTTTTAAAGACCATCTCTCCAGCCAAGTTGCCTCAGATATTCAAAAATGCATTAACCGCTCCAATTTTAATAGACATTGTCAAGTGTGTGGCTACATTTTTCACTGAAGAACCGGCTTTGGCCATCAGTTTTTTAGAAAATTTAGTCAAAGTCCCGAGGTTCAGCATACTGATGATGTGTCTTTCATCCTCTGAAAAGTTCGATCTCCTCAAGATTTGGGATGAAGTATTTTGTGATGAGGCTGTTCCAATTGAGTATGCAGAAATGCTCGACAGCTTGCGTTCAAAGTACTTTCTTAAACAATGA

Protein sequence

MADSSGKHGRDHPLDRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSRTGLLAARERVERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ

Homology

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BLAST of IVF0005232 vs. ExPASy Swiss-Prot
Match: Q5ZKQ3 (RNA polymerase II-associated protein 3 OS=Gallus gallus OX=9031 GN=RPAP3 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-27
Identity = 110/366 (30.05%), Postives = 180/366 (49.18%), Query Frame = 0


Query: 39  RNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPT-AVAFANRAMAYLKIR 98
           R  + EQ    A +EK+ GN YFK+ K++ AI+CY+R IA   T A+  ANRAMAYLKI+
Sbjct: 272 RCIEEEQLKQKAVTEKDLGNGYFKEGKYEAAIECYTRGIAADGTNALLPANRAMAYLKIQ 331

Query: 99  RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQH 158
           +++EAE+DCT+AL LD  Y KA++RR  AR  LGK KEA++D E   +LEP N++   + 
Sbjct: 332 KYEEAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVLKLEPGNKQAINEL 391

Query: 159 ADLRAFVGK----------AILEKAS-------------GASRSSPKDKKMLKKSDSDAK 218
             +R  + +          A+L K S                 + P  +  +++ D D  
Sbjct: 392 TKIRNELAEKEQSCHEEYPAVLIKESEIKNIVKLTHNPLNLKSTKPLRRIAVEEVDDDVL 451

Query: 219 IQDIPPVSSSTS------RTGLLAARERVERD------HLPR-------------KPELK 278
             D    SSSTS       +  +   E +++D       +P+              P+L 
Sbjct: 452 NSDF---SSSTSLVNNWKNSVNIETTENLDQDDQLTSMDIPKAKQLKIEEITDVSSPQLP 511

Query: 279 ASVQELAS----------QAASRSMVEAAKNIIA-PTTAYQFEVSWRGFSDDQALQACLL 338
           A  + ++S          +  +++   +A  + A P  ++Q E  +R   D        L
Sbjct: 512 AGAKGVSSVLHPSMNKQIERENKASFRSASPVPAIPANSFQLESDFRKLKDCPEKMYLYL 571

Query: 339 KTISPAKLPQIFKNALTAPILIDIVKCVATFF--TEEPALAISFLENLVKVPRFSILMMC 343
           K I P+  P++F+ +L   +   I++ +  F+   EEP+L +  L+ L ++ RF + +M 
Sbjct: 572 KQIEPSIYPKLFQKSLDPDLFNQILRILHDFYIEKEEPSLILEILQRLSELKRFDMAVMF 631

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BLAST of IVF0005232 vs. ExPASy Swiss-Prot
Match: Q9D706 (RNA polymerase II-associated protein 3 OS=Mus musculus OX=10090 GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.1e-27
Identity = 106/354 (29.94%), Postives = 165/354 (46.61%), Query Frame = 0


Query: 44  EQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPT-AVAFANRAMAYLKIRRFQEA 103
           +Q    A +EK+ GN +FK+ K+++AI+CY+R IA   T A+  ANRAMAYLKI+R++EA
Sbjct: 278 QQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEA 337

Query: 104 EDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQE---------- 163
           E DCT+A+ LD  Y KA++RR TAR  LGK  EA +D E    LEP N++          
Sbjct: 338 ERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKK 397

Query: 164 --IKKQHAD---LRAFVGKAILEKASGASRSSPKDKK---------MLKKSDSDAKIQDI 223
             I+K H D   L +     +++      R SPK  K         +++  D+      +
Sbjct: 398 ELIEKGHWDDVFLDSTQRHHVVKAVDNPPRGSPKALKKVFIEETGNLIETVDAPDSSATV 457

Query: 224 PPVSSSTSRTGLLAARERVERDHLP------------------RKPELKASVQELASQAA 283
           P    +T+  G    +   E   LP                    P+ +  V++ A Q  
Sbjct: 458 PESDRATAAVGTGTKKNPSEGVSLPAGDRPRAKVLKIEAVSDTSAPQAQVGVKQDARQPG 517

Query: 284 SR----------SMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQIF 343
           S             + AA     P  ++Q E  +R       +    +K I P+  P++F
Sbjct: 518 SEKASVRAEQMPGQLAAAGLPPVPANSFQLESDFRQLRSSPEMLYQYVKNIEPSLYPKLF 577

[Close]

BLAST of IVF0005232 vs. ExPASy Swiss-Prot
Match: Q68FQ7 (RNA polymerase II-associated protein 3 OS=Rattus norvegicus OX=10116 GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-26
Identity = 103/354 (29.10%), Postives = 171/354 (48.31%), Query Frame = 0


Query: 50  AASEKEQGNEYFKQKKFKEAIDCYSRSIALSPT-AVAFANRAMAYLKIRRFQEAEDDCTE 109
           A +EK+ GN +FK+ K+++AI+CY+R IA   T A+  ANRAMAYLK+++++EAE DCT+
Sbjct: 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQ 341

Query: 110 ALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQE-------IKKQHAD-- 169
           A+ LD  Y KA++RR TAR  LGK  EA +D E    LEP N++       IKK+  +  
Sbjct: 342 AILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKG 401

Query: 170 ------LRAFVGKAILEKASGASRSSPKDKK---------MLKKSDSDAKIQDIP----- 229
                 L +     +++      R SPK  K         +++  D+      +P     
Sbjct: 402 RWDDVFLDSTQRHNVVKPVDSPHRGSPKALKKVFIEETGNLIESVDAPESSATVPESDRA 461

Query: 230 PVSSSTSRTGLLAARERVERDHLPR-----------------KPELKASVQELASQAASR 289
            V+  T R    +  + V     PR                 + ++K  V++  S+  S 
Sbjct: 462 AVAVDTGRKKDFSQGDSVSSGETPRAKVLKIEAVGDSSAPQAQVDVKQGVRQSVSEKTSV 521

Query: 290 SMVEAAKNIIA------PTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQIFKNALTA 349
            + +    + A      P  ++Q E  +R       +    +K I P+  P++F+  L  
Sbjct: 522 RVAQTPGQLAAVVLPPVPANSFQLESDFRQLRSSPEMLYQYVKKIEPSLYPKLFQKNLDP 581

[Close]

BLAST of IVF0005232 vs. ExPASy Swiss-Prot
Match: Q9H6T3 (RNA polymerase II-associated protein 3 OS=Homo sapiens OX=9606 GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-26
Identity = 114/383 (29.77%), Postives = 185/383 (48.30%), Query Frame = 0


Query: 27  YLKQYDAVNRLS----RNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIAL-SP 86
           Y K+ D V + +    +  + +Q+   A SEK++GN +FK+ K++ AI+CY+R IA    
Sbjct: 255 YPKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGA 314

Query: 87  TAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAE 146
            A+  ANRAMAYLKI++++EAE DCT+A+ LD  Y KA++RR TAR  LGK  EA +D E
Sbjct: 315 NALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFE 374

Query: 147 FAQRLEPNNQE------------IKKQHAD-------LRAFVGKAILEKASGASRSSPKD 206
               LEP N++            I+K H D        R  V K I +       + P  
Sbjct: 375 TVLLLEPGNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPI-DNPPHPGSTKPLK 434

Query: 207 KKMLKKSDSDAKIQDIP-------PVSSSTSRTGLLAA-----RERVERDHL------PR 266
           K +++++ +  +  D+P       P ++  +   ++AA     ++   +D L      PR
Sbjct: 435 KVIIEETGNLIQTIDVPDSTTAAAPENNPINLANVIAATGTTSKKNSSQDDLFPTSDTPR 494

Query: 267 KPELK-------------ASVQELASQAASRSM--------VEAAKNIIAPTTA--YQFE 326
              LK             AS+++   Q+ S  M         + A  ++ P  A  +Q E
Sbjct: 495 AKVLKIEEVSDTSSLQPQASLKQDVCQSYSEKMPIEIEQKPAQFATTVLPPIPANSFQLE 554

Query: 327 VSWRGFSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFF--TEEPALAIS 343
             +R       +    LK I P+  P++F+  L   +   IVK +  F+   E+P L   
Sbjct: 555 SDFRQLKSSPDMLYQYLKQIEPSLYPKLFQKNLDPDVFNQIVKILHDFYIEKEKPLLIFE 614

[Close]

BLAST of IVF0005232 vs. ExPASy Swiss-Prot
Match: Q6NU95 (RNA polymerase II-associated protein 3 OS=Xenopus laevis OX=8355 GN=rpap3 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-21
Identity = 100/365 (27.40%), Postives = 165/365 (45.21%), Query Frame = 0


Query: 39  RNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPT-AVAFANRAMAYLKIR 98
           +  + +Q    A  +K+ GN YFK+ K++ AI+CYS+ +    T A+  ANRAMAYLKI+
Sbjct: 273 KQIEIQQRKQQAIMQKDLGNAYFKEGKYEIAIECYSQGMEADNTNALLPANRAMAYLKIQ 332

Query: 99  RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQ----EI 158
           +++EAE DCT A++LD  Y KA++RR TA   LGK KEA ED E   +L+P N+    E+
Sbjct: 333 KYKEAEADCTLAISLDASYCKAFARRGTASIMLGKQKEAKEDFEMVLKLDPGNKQAVLEL 392

Query: 159 KKQHADLRAF------------------------------VGKAILEKASGASR--SSPK 218
            K   +LR+                               + + ++E+  G +   ++  
Sbjct: 393 AKISQELRSIEKDRNGNKDSNQRKLINTVEKLPHLRSTKPLRRMVIEEVGGPAEIFNTSL 452

Query: 219 DKKMLKKSDS----------------------DAKIQDIPPVSSSTSRTGLLAARERVER 278
            +   +K+DS                      D     IP +   +   G  +       
Sbjct: 453 KETNHRKADSVDLTAETNTQDLNQEQNICNSPDVPSPKIPKIEEISDTPG--SCEPTTGE 512

Query: 279 DHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLK 338
           D+L  +P      + +++ + S ++   A     PT ++Q E  +R    +  L    LK
Sbjct: 513 DYLTSRPSPPKIEKVVSTFSESLNIGIPA----VPTNSFQLESDFRRLKGNPDLLYVYLK 572

Query: 339 TISPAKLPQIFKNALTAPILIDIVKCVATFF--TEEPALAISFLENLVKVPRFSILMMCL 343
            I P    ++FK AL   +  DI+  +   F   + P L    L+ L ++ RF + +M L
Sbjct: 573 QIEPTLYGKLFKKALDPDLFSDILTILREQFINKDSPDLIFEILQRLSELKRFDMAVMFL 631

[Close]

BLAST of IVF0005232 vs. ExPASy TrEMBL
Match: A0A1S3BW25 (RNA polymerase II-associated protein 3 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494093 PE=4 SV=1)

HSP 1 Score: 698.4 bits (1801), Expect = 1.7e-197
Identity = 377/410 (91.95%), Postives = 377/410 (91.95%), Query Frame = 0


Query: 1   MADSSGKHGRDHPL---------------------------------DRRQTEKASAADY 60
           MADSSGKHGRDHPL                                 DRRQTEKASAADY
Sbjct: 61  MADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 120

Query: 61  LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120
           LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA
Sbjct: 121 LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 180

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 181 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 240

Query: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 240
           PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR
Sbjct: 241 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 300

Query: 241 TGLLAARERVERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGF 300
           TGLLAARERVERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGF
Sbjct: 301 TGLLAARERVERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGF 360

Query: 301 SDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKV 360
           SDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKV
Sbjct: 361 SDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKV 420

Query: 361 PRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 378
           PRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ
Sbjct: 421 PRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 470

[Close]

BLAST of IVF0005232 vs. ExPASy TrEMBL
Match: A0A1S3BVH1 (RNA polymerase II-associated protein 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494093 PE=4 SV=1)

HSP 1 Score: 679.5 bits (1752), Expect = 8.1e-192
Identity = 377/448 (84.15%), Postives = 377/448 (84.15%), Query Frame = 0


Query: 1   MADSSGKHGRDHPL-----------------------DRRQTEKASAADYLKQYDAVNRL 60
           MADSSGKHGRDHPL                       DRRQTEKASAADYLKQYDAVNRL
Sbjct: 61  MADSSGKHGRDHPLDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADYLKQYDAVNRL 120

Query: 61  SRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIR 120
           SRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIR
Sbjct: 121 SRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIR 180

Query: 121 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQH 180
           RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQH
Sbjct: 181 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQH 240

Query: 181 ADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSRTGLLAARERV 240
           ADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSRTGLLAARERV
Sbjct: 241 ADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSRTGLLAARERV 300

Query: 241 ------------------------------------------------ERDHLPRKPELK 300
                                                           ERDHLPRKPELK
Sbjct: 301 EENGGENAVKTSARVEENEDISTRAEIACKKVATNGFHKDSSSYLWALERDHLPRKPELK 360

Query: 301 ASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQI 360
           ASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQI
Sbjct: 361 ASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQI 420

Query: 361 FKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSSSEKFDLLKIW 378
           FKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSSSEKFDLLKIW
Sbjct: 421 FKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSSSEKFDLLKIW 480

[Close]

BLAST of IVF0005232 vs. ExPASy TrEMBL
Match: A0A1S3BWU0 (RNA polymerase II-associated protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494093 PE=4 SV=1)

HSP 1 Score: 675.6 bits (1742), Expect = 1.2e-190
Identity = 377/458 (82.31%), Postives = 377/458 (82.31%), Query Frame = 0


Query: 1   MADSSGKHGRDHPL---------------------------------DRRQTEKASAADY 60
           MADSSGKHGRDHPL                                 DRRQTEKASAADY
Sbjct: 61  MADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 120

Query: 61  LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120
           LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA
Sbjct: 121 LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 180

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 181 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 240

Query: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 240
           PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR
Sbjct: 241 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 300

Query: 241 TGLLAARERV------------------------------------------------ER 300
           TGLLAARERV                                                ER
Sbjct: 301 TGLLAARERVEENGGENAVKTSARVEENEDISTRAEIACKKVATNGFHKDSSSYLWALER 360

Query: 301 DHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLK 360
           DHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLK
Sbjct: 361 DHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLK 420

Query: 361 TISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSS 378
           TISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSS
Sbjct: 421 TISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSS 480

[Close]

BLAST of IVF0005232 vs. ExPASy TrEMBL
Match: A0A5D3B9C0 (RNA polymerase II-associated protein 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001060 PE=4 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 4.6e-187
Identity = 363/411 (88.32%), Postives = 363/411 (88.32%), Query Frame = 0


Query: 15  DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS 74
           DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS
Sbjct: 62  DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS 121

Query: 75  RSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK 134
           RSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK
Sbjct: 122 RSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK 181

Query: 135 EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK 194
           EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK
Sbjct: 182 EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK 241

Query: 195 IQDIPPVSSSTSRTGLLAARERV------------------------------------- 254
           IQDIPPVSSSTSRTGLLAARERV                                     
Sbjct: 242 IQDIPPVSSSTSRTGLLAARERVEENGGENAVKTSARVEENEDISTRAEIACKKVATNGF 301

Query: 255 -----------ERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG 314
                      ERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG
Sbjct: 302 HKDSSSYLWALERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG 361

Query: 315 FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK 374
           FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK
Sbjct: 362 FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK 421

Query: 375 VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 378
           VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ
Sbjct: 422 VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 472

[Close]

BLAST of IVF0005232 vs. ExPASy TrEMBL
Match: A0A5A7TYG9 (RNA polymerase II-associated protein 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001440 PE=4 SV=1)

HSP 1 Score: 656.8 bits (1693), Expect = 5.6e-185
Identity = 362/411 (88.08%), Postives = 362/411 (88.08%), Query Frame = 0


Query: 15  DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS 74
           DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS
Sbjct: 62  DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS 121

Query: 75  RSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK 134
           RSIALSPTAVAFANRAMAYLKIRR QEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK
Sbjct: 122 RSIALSPTAVAFANRAMAYLKIRR-QEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK 181

Query: 135 EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK 194
           EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK
Sbjct: 182 EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK 241

Query: 195 IQDIPPVSSSTSRTGLLAARERV------------------------------------- 254
           IQDIPPVSSSTSRTGLLAARERV                                     
Sbjct: 242 IQDIPPVSSSTSRTGLLAARERVEENGGENAVKTSARVEENEDISTRAEIACKKVATNGF 301

Query: 255 -----------ERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG 314
                      ERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG
Sbjct: 302 HKDSSSYLWALERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG 361

Query: 315 FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK 374
           FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK
Sbjct: 362 FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK 421

Query: 375 VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 378
           VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ
Sbjct: 422 VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 471

[Close]

BLAST of IVF0005232 vs. NCBI nr
Match: XP_008453365.2 (PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Cucumis melo])

HSP 1 Score: 698 bits (1801), Expect = 5.25e-251
Identity = 377/410 (91.95%), Postives = 377/410 (91.95%), Query Frame = 0


Query: 1   MADSSGKHGRDHPLD---------------------------------RRQTEKASAADY 60
           MADSSGKHGRDHPLD                                 RRQTEKASAADY
Sbjct: 61  MADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 120

Query: 61  LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120
           LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA
Sbjct: 121 LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 180

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 181 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 240

Query: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 240
           PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR
Sbjct: 241 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 300

Query: 241 TGLLAARERVERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGF 300
           TGLLAARERVERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGF
Sbjct: 301 TGLLAARERVERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGF 360

Query: 301 SDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKV 360
           SDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKV
Sbjct: 361 SDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKV 420

Query: 361 PRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 377
           PRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ
Sbjct: 421 PRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 470

[Close]

BLAST of IVF0005232 vs. NCBI nr
Match: XP_008453357.2 (PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 679 bits (1752), Expect = 6.06e-243
Identity = 377/448 (84.15%), Postives = 377/448 (84.15%), Query Frame = 0


Query: 1   MADSSGKHGRDHPLD-----------------------RRQTEKASAADYLKQYDAVNRL 60
           MADSSGKHGRDHPLD                       RRQTEKASAADYLKQYDAVNRL
Sbjct: 61  MADSSGKHGRDHPLDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADYLKQYDAVNRL 120

Query: 61  SRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIR 120
           SRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIR
Sbjct: 121 SRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIR 180

Query: 121 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQH 180
           RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQH
Sbjct: 181 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQH 240

Query: 181 ADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSRTGLLAARERV 240
           ADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSRTGLLAARERV
Sbjct: 241 ADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSRTGLLAARERV 300

Query: 241 E------------------------------------------------RDHLPRKPELK 300
           E                                                RDHLPRKPELK
Sbjct: 301 EENGGENAVKTSARVEENEDISTRAEIACKKVATNGFHKDSSSYLWALERDHLPRKPELK 360

Query: 301 ASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQI 360
           ASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQI
Sbjct: 361 ASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQI 420

Query: 361 FKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSSSEKFDLLKIW 377
           FKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSSSEKFDLLKIW
Sbjct: 421 FKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSSSEKFDLLKIW 480

[Close]

BLAST of IVF0005232 vs. NCBI nr
Match: XP_008453348.2 (PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 675 bits (1742), Expect = 2.89e-241
Identity = 377/458 (82.31%), Postives = 377/458 (82.31%), Query Frame = 0


Query: 1   MADSSGKHGRDHPLD---------------------------------RRQTEKASAADY 60
           MADSSGKHGRDHPLD                                 RRQTEKASAADY
Sbjct: 61  MADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 120

Query: 61  LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120
           LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA
Sbjct: 121 LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 180

Query: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
           NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 181 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 240

Query: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 240
           PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR
Sbjct: 241 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 300

Query: 241 TGLLAARERVE------------------------------------------------R 300
           TGLLAARERVE                                                R
Sbjct: 301 TGLLAARERVEENGGENAVKTSARVEENEDISTRAEIACKKVATNGFHKDSSSYLWALER 360

Query: 301 DHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLK 360
           DHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLK
Sbjct: 361 DHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLK 420

Query: 361 TISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSS 377
           TISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSS
Sbjct: 421 TISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSS 480

[Close]

BLAST of IVF0005232 vs. NCBI nr
Match: TYJ96462.1 (RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 662 bits (1708), Expect = 8.14e-237
Identity = 363/411 (88.32%), Postives = 363/411 (88.32%), Query Frame = 0


Query: 15  DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS 74
           DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS
Sbjct: 62  DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS 121

Query: 75  RSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK 134
           RSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK
Sbjct: 122 RSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK 181

Query: 135 EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK 194
           EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK
Sbjct: 182 EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK 241

Query: 195 IQDIPPVSSSTSRTGLLAARERVE------------------------------------ 254
           IQDIPPVSSSTSRTGLLAARERVE                                    
Sbjct: 242 IQDIPPVSSSTSRTGLLAARERVEENGGENAVKTSARVEENEDISTRAEIACKKVATNGF 301

Query: 255 ------------RDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG 314
                       RDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG
Sbjct: 302 HKDSSSYLWALERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG 361

Query: 315 FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK 374
           FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK
Sbjct: 362 FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK 421

Query: 375 VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 377
           VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ
Sbjct: 422 VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 472

[Close]

BLAST of IVF0005232 vs. NCBI nr
Match: KAA0048074.1 (RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 655 bits (1690), Expect = 4.31e-234
Identity = 362/411 (88.08%), Postives = 362/411 (88.08%), Query Frame = 0


Query: 15  DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS 74
           DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS
Sbjct: 62  DRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYS 121

Query: 75  RSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK 134
           RSIALSPTAVAFANRAMAYLKIRR QEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK
Sbjct: 122 RSIALSPTAVAFANRAMAYLKIRR-QEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK 181

Query: 135 EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK 194
           EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK
Sbjct: 182 EALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAK 241

Query: 195 IQDIPPVSSSTSRTGLLAARERVE------------------------------------ 254
           IQDIPPVSSSTSRTGLLAARERVE                                    
Sbjct: 242 IQDIPPVSSSTSRTGLLAARERVEENGGENAVKTSARVEENEDISTRAEIACKKVATNGF 301

Query: 255 ------------RDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG 314
                       RDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG
Sbjct: 302 HKDSSSYLWALERDHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRG 361

Query: 315 FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK 374
           FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK
Sbjct: 362 FSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVK 421

Query: 375 VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 377
           VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ
Sbjct: 422 VPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 471

[Close]

BLAST of IVF0005232 vs. TAIR 10
Match: AT1G56440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 378.6 bits (971), Expect = 5.7e-105
Identity = 217/419 (51.79%), Postives = 283/419 (67.54%), Query Frame = 0


Query: 26  DYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVA 85
           D+ K+Y ++  LS +   E S +D++SEKEQGNE+FKQKKF EAIDCYSRSIALSP AV 
Sbjct: 61  DFAKKYRSIRDLSSSLIGE-SLLDSSSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAVT 120

Query: 86  FANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQR 145
           +ANRAMAYLKI+R++EAE DCTEALNLDDRYIKAYSRRATARKELG  KEA EDAEFA R
Sbjct: 121 YANRAMAYLKIKRYREAEVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALR 180

Query: 146 LEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQD-------- 205
           LEP +QE+KKQ+AD+++ + K I+EKA+GA +S+ ++  +LK S  D KIQ         
Sbjct: 181 LEPESQELKKQYADIKSLLEKEIIEKATGAMQSTAQE--LLKTSGLDKKIQKPKTEMTSK 240

Query: 206 ------------IPPVSSSTSRTG-------------------------------LLAAR 265
                       + PV  S   +G                               +    
Sbjct: 241 PVTLVAKTNRDIVQPVLGSNESSGKKLIENIQPEEKSKEGSMKIPAITEILDSKKVTPGS 300

Query: 266 ERVERDHLP----------------RKPELKASVQELASQAASRSMVEAAKNIIAPTTAY 325
           +  E++  P                ++ ELK SVQELA+ AAS +M EA+KNI  P +AY
Sbjct: 301 QSYEKEAKPSDRNGTQPSGPENQVSKQLELKPSVQELAAHAASLAMTEASKNIKTPKSAY 360

Query: 326 QFEVSWRGFSDDQALQACLLKTISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAI 378
           +FE SWR FS D AL++ LLK  +P+ LPQIFKNALT+P+L+DI+KCVA+FFTE+  LA+
Sbjct: 361 EFENSWRSFSGDSALRSQLLKVTTPSSLPQIFKNALTSPVLVDIIKCVASFFTEDMDLAV 420

[Close]

BLAST of IVF0005232 vs. TAIR 10
Match: AT1G56440.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 372.9 bits (956), Expect = 3.1e-103
Identity = 218/439 (49.66%), Postives = 285/439 (64.92%), Query Frame = 0


Query: 26  DYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVA 85
           D+ K+Y ++  LS +   E S +D++SEKEQGNE+FKQKKF EAIDCYSRSIALSP AV 
Sbjct: 61  DFAKKYRSIRDLSSSLIGE-SLLDSSSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAVT 120

Query: 86  FANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQR 145
           +ANRAMAYLKI+R++EAE DCTEALNLDDRYIKAYSRRATARKELG  KEA EDAEFA R
Sbjct: 121 YANRAMAYLKIKRYREAEVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALR 180

Query: 146 LEPNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSST 205
           LEP +QE+KKQ+AD+++ + K I+EKA+GA +S+ ++  +LK S  D KIQ   P +  T
Sbjct: 181 LEPESQELKKQYADIKSLLEKEIIEKATGAMQSTAQE--LLKTSGLDKKIQ--KPKTEMT 240

Query: 206 SRTGLLAAR---------------------ERVERDH----------------------- 265
           S+   L A+                     E ++ +H                       
Sbjct: 241 SKPVTLVAKTNRDIVQPVLGSNESSGKKLIENIQPEHRWNFRELISLYLSCYLQEKSKEG 300

Query: 266 -------------------------------------------LPRKPELKASVQELASQ 325
                                                      + ++ ELK SVQELA+ 
Sbjct: 301 SMKIPAITEILDSKKVTPGSQSYEKEAKPSDRNGTQPSGPENQVSKQLELKPSVQELAAH 360

Query: 326 AASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQIFKNALTAPI 378
           AAS +M EA+KNI  P +AY+FE SWR FS D AL++ LLK  +P+ LPQIFKNALT+P+
Sbjct: 361 AASLAMTEASKNIKTPKSAYEFENSWRSFSGDSALRSQLLKVTTPSSLPQIFKNALTSPV 420

[Close]

BLAST of IVF0005232 vs. TAIR 10
Match: AT3G17970.1 (translocon at the outer membrane of chloroplasts 64-III )

HSP 1 Score: 96.7 bits (239), Expect = 4.3e-20
Identity = 66/160 (41.25%), Postives = 91/160 (56.88%), Query Frame = 0


Query: 6   GKHGRDH-PLDRRQTEKASAADYLKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQK 65
           G+HG D   LD  QT   S  +Y           +    E+S   A   KE+GN+ FK+K
Sbjct: 432 GRHGGDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEES---AEIAKEKGNQAFKEK 491

Query: 66  KFKEAIDCYSRSIALSP-TAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRR 125
            +++AI  YS +I LS   A  ++NRA AYL++  F +AE+DCT+A+ LD + +KAY RR
Sbjct: 492 LWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKKNVKAYLRR 551

Query: 126 ATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHADLRAF 164
            TAR+ LG  K A+ED  +A  LEPNN+        LR F
Sbjct: 552 GTAREMLGDCKGAIEDFRYALVLEPNNKRASLSAERLRKF 588

[Close]

BLAST of IVF0005232 vs. TAIR 10
Match: AT2G42810.1 (protein phosphatase 5.2 )

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-15
Identity = 52/133 (39.10%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 42  QTEQSFVDAASE-KEQGNEYFKQKKFKEAIDCYSRSIAL-SPTAVAFANRAMAYLKIRRF 101
           + E S V  A E K Q NE FK  K+  AID Y+++I L S  AV +ANRA A+ K+  +
Sbjct: 4   KNENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEY 63

Query: 102 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHAD 161
             A  D ++A+ +D RY K Y RR  A   +GK K+AL+D +  +RL PN+ +  ++  +
Sbjct: 64  GSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRKLKE 123

Query: 162 LRAFVGKAILEKA 173
               V K   E+A
Sbjct: 124 CEKAVMKLKFEEA 136

[Close]

BLAST of IVF0005232 vs. TAIR 10
Match: AT2G42810.2 (protein phosphatase 5.2 )

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-15
Identity = 61/173 (35.26%), Postives = 93/173 (53.76%), Query Frame = 0


Query: 42  QTEQSFVDAASE-KEQGNEYFKQKKFKEAIDCYSRSIAL-SPTAVAFANRAMAYLKIRRF 101
           + E S V  A E K Q NE FK  K+  AID Y+++I L S  AV +ANRA A+ K+  +
Sbjct: 4   KNENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEY 63

Query: 102 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHAD 161
             A  D ++A+ +D RY K Y RR  A   +GK K+AL+D +  +RL PN+ +  ++  +
Sbjct: 64  GSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRKLKE 123

Query: 162 LRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSRTGLLA 213
               V K   E+A     S   +++ + +S     I + P  SS  ++T L A
Sbjct: 124 CEKAVMKLKFEEAISVPVS---ERRSVAESIDFHTIGNKPRSSSMPTKTALAA 173

The following BLAST results are available for this feature:

BLAST of IVF0005232 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZKQ3	1.2e-27	30.05	RNA polymerase II-associated protein 3 OS=Gallus gallus OX=9031 GN=RPAP3 PE=2 SV...	[more]
Q9D706	6.1e-27	29.94	RNA polymerase II-associated protein 3 OS=Mus musculus OX=10090 GN=Rpap3 PE=1 SV...	[more]
Q68FQ7	1.8e-26	29.10	RNA polymerase II-associated protein 3 OS=Rattus norvegicus OX=10116 GN=Rpap3 PE...	[more]
Q9H6T3	6.7e-26	29.77	RNA polymerase II-associated protein 3 OS=Homo sapiens OX=9606 GN=RPAP3 PE=1 SV=...	[more]
Q6NU95	1.3e-21	27.40	RNA polymerase II-associated protein 3 OS=Xenopus laevis OX=8355 GN=rpap3 PE=2 S...	[more]

BLAST of IVF0005232 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BW25	1.7e-197	91.95	RNA polymerase II-associated protein 3 isoform X3 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A1S3BVH1	8.1e-192	84.15	RNA polymerase II-associated protein 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A1S3BWU0	1.2e-190	82.31	RNA polymerase II-associated protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3B9C0	4.6e-187	88.32	RNA polymerase II-associated protein 3 isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A5A7TYG9	5.6e-185	88.08	RNA polymerase II-associated protein 3 isoform X1 OS=Cucumis melo var. makuwa OX...	[more]

BLAST of IVF0005232 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453365.2	5.25e-251	91.95	PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Cucumis melo]	[more]
XP_008453357.2	6.06e-243	84.15	PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Cucumis melo]	[more]
XP_008453348.2	2.89e-241	82.31	PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo]	[more]
TYJ96462.1	8.14e-237	88.32	RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0048074.1	4.31e-234	88.08	RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0005232 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56440.1	5.7e-105	51.79	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G56440.2	3.1e-103	49.66	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G17970.1	4.3e-20	41.25	translocon at the outer membrane of chloroplasts 64-III	[more]
AT2G42810.1	3.2e-15	39.10	protein phosphatase 5.2	[more]
AT2G42810.2	3.2e-15	35.26	protein phosphatase 5.2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 123..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..210
None	No IPR available	PANTHER	PTHR47329	OS05G0129900 PROTEIN	coord: 17..214 coord: 218..377
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 50..83 e-value: 8.9E-5 score: 31.9 coord: 84..116 e-value: 0.082 score: 22.0 coord: 117..150 e-value: 0.064 score: 22.4
IPR019734	Tetratricopeptide repeat	PFAM	PF13181	TPR_8	coord: 85..113 e-value: 0.18 score: 12.1
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 50..83 score: 10.2959
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 117..150 score: 8.0539
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 34..148 e-value: 2.0E-35 score: 123.3
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 51..168
IPR025986	RNA-polymerase II-associated protein 3-like, C-terminal domain	PFAM	PF13877	RPAP3_C	coord: 253..342 e-value: 5.5E-26 score: 90.8
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 55..82 e-value: 1.9E-7 score: 30.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005232.1	IVF0005232.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding