Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATTTAAGCACCTCACGACCTGGTTGTGCGTTCAACGATAGGACCGGATCGAGTGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCATAGTTCGCCAGGAAGTCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACAACATGTGCAGTTCCTTGAGGATGACTAACGAGGAGAAGATGGAATTCTGCACGATCCTGCTACGAGAAGATTGA
mRNA sequence
ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATTTAAGCACCTCACGACCTGGTTGTGCGTTCAACGATAGGACCGGATCGAGTGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCATAGTTCGCCAGGAAGTCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACAACATGTGCAGTTCCTTGAGGATGACTAACGAGGAGAAGATGGAATTCTGCACGATCCTGCTACGAGAAGATTGA
Coding sequence (CDS)
ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATTTAAGCACCTCACGACCTGGTTGTGCGTTCAACGATAGGACCGGATCGAGTGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCATAGTTCGCCAGGAAGTCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACAACATGTGCAGTTCCTTGAGGATGACTAACGAGGAGAAGATGGAATTCTGCACGATCCTGCTACGAGAAGATTGA
Protein sequence
MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED
Homology
BLAST of IVF0004991 vs. ExPASy TrEMBL
Match:
A0A5A7V3G0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00270 PE=4 SV=1)
HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
MPDGNDMEIHTMYNHGFNMSQDD+STSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV
Sbjct: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
Query: 61 MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
MEYVNDQLRAIVEWPIVMLHNET VRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS
Sbjct: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
Query: 121 SLRMTNEEKMEFCTILLRED 141
SLRMTNEEKMEFCTILLRED
Sbjct: 121 SLRMTNEEKMEFCTILLRED 140
BLAST of IVF0004991 vs. ExPASy TrEMBL
Match:
A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)
HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 70/139 (50.36%), Postives = 93/139 (66.91%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
M DGND+E MY+ G ++SQDD+ TS+P C + R SS SKRKRG QR GE+++I+
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290
Query: 61 MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
++ +NDQLR I+EWP NET VRQE LR L M +LS LDR C L S+D+M S
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350
Query: 121 SLRMTNEEKMEFCTILLRE 140
+ MT+EE+ FC + LR+
Sbjct: 351 FVEMTDEERKNFCRVFLRD 369
BLAST of IVF0004991 vs. ExPASy TrEMBL
Match:
A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)
HSP 1 Score: 120.6 bits (301), Expect = 5.4e-24
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
M DGN+ E ++Y+ G +MSQ+D+ S+P N R SS KRKRG Q+ GEI++IH
Sbjct: 54 MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 113
Query: 61 MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
++ +NDQL+ IVEW L N T V QE +R LR M ELS LDRA C L +D+M
Sbjct: 114 LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 173
Query: 121 SLRMTNEEKMEFCTILLRE 140
++MTN+E+ FC +LLR+
Sbjct: 174 FVQMTNDERQNFCRVLLRD 191
BLAST of IVF0004991 vs. ExPASy TrEMBL
Match:
A0A5A7URM1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00200 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 7.1e-24
Identity = 74/143 (51.75%), Postives = 90/143 (62.94%), Query Frame = 0
Query: 3 DGNDMEIHTMYNHGFNMSQ-----DDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELI 62
D ND+EI TMYN GFNMS+ DL P + S +K GGQRV ++LI
Sbjct: 92 DRNDIEIPTMYNQGFNMSRRIYGPHDL-VEHPMVGLD----QSDQSKKGGGQRVEHVDLI 151
Query: 63 HEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDN 122
H+ M+ NDQLR IVEW V L NET V QEVL +L A+ ELSRLDR S LF +LD+
Sbjct: 152 HKAMKCANDQLRVIVEWTSVALQNETTVHQEVLCQLHAIPELSRLDRVHYSRILFCNLDD 211
Query: 123 MCSSLRMTNEEKMEFCTILLRED 141
M L + +EKM+FCT+LLRED
Sbjct: 212 MRGFLEILEDEKMDFCTVLLRED 229
BLAST of IVF0004991 vs. ExPASy TrEMBL
Match:
A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 9.2e-24
Identity = 67/137 (48.91%), Postives = 87/137 (63.50%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
M DGN+ E +MY+ G +MSQ+D+ SRP R SSGSKRKR Q+ GEIE+IH
Sbjct: 79 MLDGNE-EFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMA 138
Query: 61 MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
+E NDQLR I EWP L N+T VRQE+LR L M EL+ LDR C L +D+M
Sbjct: 139 IECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRG 198
Query: 121 SLRMTNEEKMEFCTILL 138
++M ++E+ FC +LL
Sbjct: 199 FIQMIDDERQNFCRVLL 214
BLAST of IVF0004991 vs. NCBI nr
Match:
KAA0060299.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22049.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 278 bits (712), Expect = 2.12e-94
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
MPDGNDMEIHTMYNHGFNMSQDD+STSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV
Sbjct: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
Query: 61 MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
MEYVNDQLRAIVEWPIVMLHNET VRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS
Sbjct: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
Query: 121 SLRMTNEEKMEFCTILLRED 140
SLRMTNEEKMEFCTILLRED
Sbjct: 121 SLRMTNEEKMEFCTILLRED 140
BLAST of IVF0004991 vs. NCBI nr
Match:
KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 132 bits (333), Expect = 3.40e-34
Identity = 70/139 (50.36%), Postives = 93/139 (66.91%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
M DGND+E MY+ G ++SQDD+ TS+P C + R SS SKRKRG QR GE+++I+
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290
Query: 61 MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
++ +NDQLR I+EWP NET VRQE LR L M +LS LDR C L S+D+M S
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350
Query: 121 SLRMTNEEKMEFCTILLRE 139
+ MT+EE+ FC + LR+
Sbjct: 351 FVEMTDEERKNFCRVFLRD 369
BLAST of IVF0004991 vs. NCBI nr
Match:
XP_031744343.1 (uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharacterized protein LOC116404989 [Cucumis sativus])
HSP 1 Score: 123 bits (309), Expect = 1.00e-31
Identity = 67/136 (49.26%), Postives = 95/136 (69.85%), Query Frame = 0
Query: 3 DGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVME 62
D NDME +M +H FNMSQDD++ RP + RT SSGSKR+RGGQ + ++I + M
Sbjct: 117 DLNDMEFPSMSSHRFNMSQDDIA--RPSRGTDSRTTSSGSKRRRGGQTLETADVIKDAMA 176
Query: 63 YVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCSSL 122
D+LR I EWP + L +E+ VR+EV+R LRA+ ELSRLD A C+ L ++L +M L
Sbjct: 177 LQTDELRLIAEWPRLALEDESRVRREVVRALRAIPELSRLDMAQCNRILMNNLTDMKGFL 236
Query: 123 RMTNEEKMEFCTILLR 138
++NEEK+++CT+L+R
Sbjct: 237 ELSNEEKLDYCTVLIR 250
BLAST of IVF0004991 vs. NCBI nr
Match:
KAA0050806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 120 bits (301), Expect = 3.54e-31
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
M DGN+ E ++Y+ G +MSQ+D+ S+P N R SS KRKRG Q+ GEI++IH
Sbjct: 54 MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 113
Query: 61 MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
++ +NDQL+ IVEW L N T V QE +R LR M ELS LDRA C L +D+M
Sbjct: 114 LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 173
Query: 121 SLRMTNEEKMEFCTILLRE 139
++MTN+E+ FC +LLR+
Sbjct: 174 FVQMTNDERQNFCRVLLRD 191
BLAST of IVF0004991 vs. NCBI nr
Match:
KAA0056139.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 120 bits (300), Expect = 1.27e-30
Identity = 73/144 (50.69%), Postives = 92/144 (63.89%), Query Frame = 0
Query: 3 DGNDMEIHTMYNHGFNMSQ------DDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIEL 62
D ND+EI TMYN GFNMS+ D + G +D++ +K GGQRV ++L
Sbjct: 92 DRNDIEIPTMYNQGFNMSRRIYGPHDLVEHPMVGLDQSDQS------KKGGGQRVEHVDL 151
Query: 63 IHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLD 122
IH+ M+ NDQLR IVEW V L NET V QEVL +L A+ ELSRLDR S LF +LD
Sbjct: 152 IHKAMKCANDQLRVIVEWTSVALQNETTVHQEVLCQLHAIPELSRLDRVHYSRILFCNLD 211
Query: 123 NMCSSLRMTNEEKMEFCTILLRED 140
+M L + +EKM+FCT+LLRED
Sbjct: 212 DMRGFLEILEDEKMDFCTVLLRED 229
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V3G0 | 1.2e-71 | 98.57 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BQI7 | 1.1e-27 | 50.36 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U9D5 | 5.4e-24 | 47.48 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7URM1 | 7.1e-24 | 51.75 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7U4I8 | 9.2e-24 | 48.91 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060299.1 | 2.12e-94 | 98.57 | retrotransposon protein [Cucumis melo var. makuwa] >TYK22049.1 retrotransposon p... | [more] |
KAA0033884.1 | 3.40e-34 | 50.36 | retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p... | [more] |
XP_031744343.1 | 1.00e-31 | 49.26 | uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharact... | [more] |
KAA0050806.1 | 3.54e-31 | 47.48 | retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon p... | [more] |
KAA0056139.1 | 1.27e-30 | 50.69 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |