IVF0004991 (gene) Melon (IVF77) v1

Overview
NameIVF0004991
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr06: 14862859 .. 14863281 (+)
RNA-Seq ExpressionIVF0004991
SyntenyIVF0004991
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATTTAAGCACCTCACGACCTGGTTGTGCGTTCAACGATAGGACCGGATCGAGTGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCATAGTTCGCCAGGAAGTCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACAACATGTGCAGTTCCTTGAGGATGACTAACGAGGAGAAGATGGAATTCTGCACGATCCTGCTACGAGAAGATTGA

mRNA sequence

ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATTTAAGCACCTCACGACCTGGTTGTGCGTTCAACGATAGGACCGGATCGAGTGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCATAGTTCGCCAGGAAGTCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACAACATGTGCAGTTCCTTGAGGATGACTAACGAGGAGAAGATGGAATTCTGCACGATCCTGCTACGAGAAGATTGA

Coding sequence (CDS)

ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATTTAAGCACCTCACGACCTGGTTGTGCGTTCAACGATAGGACCGGATCGAGTGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCATAGTTCGCCAGGAAGTCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACAACATGTGCAGTTCCTTGAGGATGACTAACGAGGAGAAGATGGAATTCTGCACGATCCTGCTACGAGAAGATTGA

Protein sequence

MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED
Homology
BLAST of IVF0004991 vs. ExPASy TrEMBL
Match: A0A5A7V3G0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00270 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
           MPDGNDMEIHTMYNHGFNMSQDD+STSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV
Sbjct: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60

Query: 61  MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
           MEYVNDQLRAIVEWPIVMLHNET VRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS
Sbjct: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120

Query: 121 SLRMTNEEKMEFCTILLRED 141
           SLRMTNEEKMEFCTILLRED
Sbjct: 121 SLRMTNEEKMEFCTILLRED 140

BLAST of IVF0004991 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 70/139 (50.36%), Postives = 93/139 (66.91%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
           M DGND+E   MY+ G ++SQDD+ TS+P C  + R  SS SKRKRG QR GE+++I+  
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290

Query: 61  MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
           ++ +NDQLR I+EWP     NET VRQE LR L  M +LS LDR  C   L  S+D+M S
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350

Query: 121 SLRMTNEEKMEFCTILLRE 140
            + MT+EE+  FC + LR+
Sbjct: 351 FVEMTDEERKNFCRVFLRD 369

BLAST of IVF0004991 vs. ExPASy TrEMBL
Match: A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.4e-24
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
           M DGN+ E  ++Y+ G +MSQ+D+  S+P    N R  SS  KRKRG Q+ GEI++IH  
Sbjct: 54  MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 113

Query: 61  MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
           ++ +NDQL+ IVEW    L N T V QE +R LR M ELS LDRA C   L   +D+M  
Sbjct: 114 LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 173

Query: 121 SLRMTNEEKMEFCTILLRE 140
            ++MTN+E+  FC +LLR+
Sbjct: 174 FVQMTNDERQNFCRVLLRD 191

BLAST of IVF0004991 vs. ExPASy TrEMBL
Match: A0A5A7URM1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00200 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.1e-24
Identity = 74/143 (51.75%), Postives = 90/143 (62.94%), Query Frame = 0

Query: 3   DGNDMEIHTMYNHGFNMSQ-----DDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELI 62
           D ND+EI TMYN GFNMS+      DL    P    +     S   +K GGQRV  ++LI
Sbjct: 92  DRNDIEIPTMYNQGFNMSRRIYGPHDL-VEHPMVGLD----QSDQSKKGGGQRVEHVDLI 151

Query: 63  HEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDN 122
           H+ M+  NDQLR IVEW  V L NET V QEVL +L A+ ELSRLDR   S  LF +LD+
Sbjct: 152 HKAMKCANDQLRVIVEWTSVALQNETTVHQEVLCQLHAIPELSRLDRVHYSRILFCNLDD 211

Query: 123 MCSSLRMTNEEKMEFCTILLRED 141
           M   L +  +EKM+FCT+LLRED
Sbjct: 212 MRGFLEILEDEKMDFCTVLLRED 229

BLAST of IVF0004991 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.2e-24
Identity = 67/137 (48.91%), Postives = 87/137 (63.50%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
           M DGN+ E  +MY+ G +MSQ+D+  SRP      R  SSGSKRKR  Q+ GEIE+IH  
Sbjct: 79  MLDGNE-EFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMA 138

Query: 61  MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
           +E  NDQLR I EWP   L N+T VRQE+LR L  M EL+ LDR  C   L   +D+M  
Sbjct: 139 IECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRG 198

Query: 121 SLRMTNEEKMEFCTILL 138
            ++M ++E+  FC +LL
Sbjct: 199 FIQMIDDERQNFCRVLL 214

BLAST of IVF0004991 vs. NCBI nr
Match: KAA0060299.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22049.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (712), Expect = 2.12e-94
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
           MPDGNDMEIHTMYNHGFNMSQDD+STSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV
Sbjct: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60

Query: 61  MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
           MEYVNDQLRAIVEWPIVMLHNET VRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS
Sbjct: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120

Query: 121 SLRMTNEEKMEFCTILLRED 140
           SLRMTNEEKMEFCTILLRED
Sbjct: 121 SLRMTNEEKMEFCTILLRED 140

BLAST of IVF0004991 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (333), Expect = 3.40e-34
Identity = 70/139 (50.36%), Postives = 93/139 (66.91%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
           M DGND+E   MY+ G ++SQDD+ TS+P C  + R  SS SKRKRG QR GE+++I+  
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290

Query: 61  MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
           ++ +NDQLR I+EWP     NET VRQE LR L  M +LS LDR  C   L  S+D+M S
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350

Query: 121 SLRMTNEEKMEFCTILLRE 139
            + MT+EE+  FC + LR+
Sbjct: 351 FVEMTDEERKNFCRVFLRD 369

BLAST of IVF0004991 vs. NCBI nr
Match: XP_031744343.1 (uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharacterized protein LOC116404989 [Cucumis sativus])

HSP 1 Score: 123 bits (309), Expect = 1.00e-31
Identity = 67/136 (49.26%), Postives = 95/136 (69.85%), Query Frame = 0

Query: 3   DGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVME 62
           D NDME  +M +H FNMSQDD++  RP    + RT SSGSKR+RGGQ +   ++I + M 
Sbjct: 117 DLNDMEFPSMSSHRFNMSQDDIA--RPSRGTDSRTTSSGSKRRRGGQTLETADVIKDAMA 176

Query: 63  YVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCSSL 122
              D+LR I EWP + L +E+ VR+EV+R LRA+ ELSRLD A C+  L ++L +M   L
Sbjct: 177 LQTDELRLIAEWPRLALEDESRVRREVVRALRAIPELSRLDMAQCNRILMNNLTDMKGFL 236

Query: 123 RMTNEEKMEFCTILLR 138
            ++NEEK+++CT+L+R
Sbjct: 237 ELSNEEKLDYCTVLIR 250

BLAST of IVF0004991 vs. NCBI nr
Match: KAA0050806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 3.54e-31
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
           M DGN+ E  ++Y+ G +MSQ+D+  S+P    N R  SS  KRKRG Q+ GEI++IH  
Sbjct: 54  MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 113

Query: 61  MEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
           ++ +NDQL+ IVEW    L N T V QE +R LR M ELS LDRA C   L   +D+M  
Sbjct: 114 LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 173

Query: 121 SLRMTNEEKMEFCTILLRE 139
            ++MTN+E+  FC +LLR+
Sbjct: 174 FVQMTNDERQNFCRVLLRD 191

BLAST of IVF0004991 vs. NCBI nr
Match: KAA0056139.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (300), Expect = 1.27e-30
Identity = 73/144 (50.69%), Postives = 92/144 (63.89%), Query Frame = 0

Query: 3   DGNDMEIHTMYNHGFNMSQ------DDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIEL 62
           D ND+EI TMYN GFNMS+      D +     G   +D++      +K GGQRV  ++L
Sbjct: 92  DRNDIEIPTMYNQGFNMSRRIYGPHDLVEHPMVGLDQSDQS------KKGGGQRVEHVDL 151

Query: 63  IHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWSLFHSLD 122
           IH+ M+  NDQLR IVEW  V L NET V QEVL +L A+ ELSRLDR   S  LF +LD
Sbjct: 152 IHKAMKCANDQLRVIVEWTSVALQNETTVHQEVLCQLHAIPELSRLDRVHYSRILFCNLD 211

Query: 123 NMCSSLRMTNEEKMEFCTILLRED 140
           +M   L +  +EKM+FCT+LLRED
Sbjct: 212 DMRGFLEILEDEKMDFCTVLLRED 229

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V3G01.2e-7198.57Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BQI71.1e-2750.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9D55.4e-2447.48Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7URM17.1e-2451.75Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U4I89.2e-2448.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0060299.12.12e-9498.57retrotransposon protein [Cucumis melo var. makuwa] >TYK22049.1 retrotransposon p... [more]
KAA0033884.13.40e-3450.36retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p... [more]
XP_031744343.11.00e-3149.26uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharact... [more]
KAA0050806.13.54e-3147.48retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon p... [more]
KAA0056139.11.27e-3050.69retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004991.1IVF0004991.1mRNA