Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTTAAATGTGTAGCTGAGGCAAATCCGGCGTCGTACGGAGGAGTGGTGAAGAAGTTCGGCTATCGCGAGGACTTGACGACATTGGTCAGCCGAAGACACCGATTGCAGGCTACGTTTCGACGTGAGGCGCGGCTCGACGGAAATGAAGACGAGGAACAGCAAAAGCGGTTGTACGTTGAACGGAAGAGGAATGGAGATCAGAGGGTTGGCGACCGGTTATTGAGTGGAGAAGAAGAAGAATAA
mRNA sequence
ATGGAAGTTAAATGTGTAGCTGAGGCAAATCCGGCGTCGTACGGAGGAGTGGTGAAGAAGTTCGGCTATCGCGAGGACTTGACGACATTGGTCAGCCGAAGACACCGATTGCAGGCTACGTTTCGACGTGAGGCGCGGCTCGACGGAAATGAAGACGAGGAACAGCAAAAGCGGTTGTACGTTGAACGGAAGAGGAATGGAGATCAGAGGGTTGGCGACCGGTTATTGAGTGGAGAAGAAGAAGAATAA
Coding sequence (CDS)
ATGGAAGTTAAATGTGTAGCTGAGGCAAATCCGGCGTCGTACGGAGGAGTGGTGAAGAAGTTCGGCTATCGCGAGGACTTGACGACATTGGTCAGCCGAAGACACCGATTGCAGGCTACGTTTCGACGTGAGGCGCGGCTCGACGGAAATGAAGACGAGGAACAGCAAAAGCGGTTGTACGTTGAACGGAAGAGGAATGGAGATCAGAGGGTTGGCGACCGGTTATTGAGTGGAGAAGAAGAAGAATAA
Protein sequence
MEVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDGNEDEEQQKRLYVERKRNGDQRVGDRLLSGEEEE
Homology
BLAST of IVF0004650 vs. ExPASy TrEMBL
Match:
A0A5D3D0G0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2434G00020 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 0
Query: 2 EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDGNEDEEQQKRLYV 61
EVKCVAE +P SYGG +KKFGYRED TT VSR RL+ FRRE R DG +DE QQK+L V
Sbjct: 7 EVKCVAEVDPTSYGGAMKKFGYREDSTTTVSRSRRLKVRFRRETRFDGKDDEAQQKQLCV 66
Query: 62 ERKRNGDQRVGDRLLSGEEEE 83
ERKRNGDQR GDRL +GEEEE
Sbjct: 67 ERKRNGDQRGGDRLSNGEEEE 87
BLAST of IVF0004650 vs. ExPASy TrEMBL
Match:
A0A5A7U3Q7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001640 PE=4 SV=1)
HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 0
Query: 2 EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDGNEDEEQQKRLYV 61
EVKCVAE +P SYGG +KKFGYRED TT VSRR RL+A FRRE R DG EDE QQKRL V
Sbjct: 105 EVKCVAEVDPMSYGGAMKKFGYREDSTTTVSRRRRLKARFRRETRFDGKEDEAQQKRLCV 164
Query: 62 ERKRNGDQRVGDRLLSGEEEE 83
E K NGD+R GDRL +GEEEE
Sbjct: 165 EWKGNGDRRGGDRLSNGEEEE 185
BLAST of IVF0004650 vs. ExPASy TrEMBL
Match:
A0A5A7SPT6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00190 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0
Query: 2 EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDG 50
EV+CVAEA+ Y G + KFG RED T V+RR RLQA FRREARLDG
Sbjct: 37 EVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDG 84
BLAST of IVF0004650 vs. NCBI nr
Match:
TYK17673.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 112 bits (280), Expect = 1.34e-26
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 0
Query: 2 EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDGNEDEEQQKRLYV 61
EVKCVAE +P SYGG +KKFGYRED TT VSR RL+ FRRE R DG +DE QQK+L V
Sbjct: 7 EVKCVAEVDPTSYGGAMKKFGYREDSTTTVSRSRRLKVRFRRETRFDGKDDEAQQKQLCV 66
Query: 62 ERKRNGDQRVGDRLLSGEEEE 82
ERKRNGDQR GDRL +GEEEE
Sbjct: 67 ERKRNGDQRGGDRLSNGEEEE 87
BLAST of IVF0004650 vs. NCBI nr
Match:
KAA0048089.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 111 bits (277), Expect = 3.46e-26
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 0
Query: 2 EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDGNEDEEQQKRLYV 61
EVKCVAE +P SYGG +KKFGYRED TT VSRR RL+A FRRE R DG EDE QQKRL V
Sbjct: 105 EVKCVAEVDPMSYGGAMKKFGYREDSTTTVSRRRRLKARFRRETRFDGKEDEAQQKRLCV 164
Query: 62 ERKRNGDQRVGDRLLSGEEEE 82
E K NGD+R GDRL +GEEEE
Sbjct: 165 EWKGNGDRRGGDRLSNGEEEE 185
BLAST of IVF0004650 vs. NCBI nr
Match:
KAA0033202.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 62.0 bits (149), Expect = 6.83e-09
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0
Query: 2 EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDG 49
EV+CVAEA+ Y G + KFG RED T V+RR RLQA FRREARLDG
Sbjct: 37 EVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDG 84
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3D0G0 | 1.3e-22 | 72.84 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2434G00020 P... | [more] |
| A0A5A7U3Q7 | 3.0e-22 | 74.07 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001640 P... | [more] |
| A0A5A7SPT6 | 1.6e-07 | 66.67 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G001... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK17673.1 | 1.34e-26 | 72.84 | pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0048089.1 | 3.46e-26 | 74.07 | pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0033202.1 | 6.83e-09 | 66.67 | gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
