IVF0004650 (gene) Melon (IVF77) v1

Overview


Name	IVF0004650
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pol protein
Location	chr05: 22534385 .. 22534633 (+)
RNA-Seq Expression	IVF0004650
Synteny	IVF0004650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTAAATGTGTAGCTGAGGCAAATCCGGCGTCGTACGGAGGAGTGGTGAAGAAGTTCGGCTATCGCGAGGACTTGACGACATTGGTCAGCCGAAGACACCGATTGCAGGCTACGTTTCGACGTGAGGCGCGGCTCGACGGAAATGAAGACGAGGAACAGCAAAAGCGGTTGTACGTTGAACGGAAGAGGAATGGAGATCAGAGGGTTGGCGACCGGTTATTGAGTGGAGAAGAAGAAGAATAA

mRNA sequence

ATGGAAGTTAAATGTGTAGCTGAGGCAAATCCGGCGTCGTACGGAGGAGTGGTGAAGAAGTTCGGCTATCGCGAGGACTTGACGACATTGGTCAGCCGAAGACACCGATTGCAGGCTACGTTTCGACGTGAGGCGCGGCTCGACGGAAATGAAGACGAGGAACAGCAAAAGCGGTTGTACGTTGAACGGAAGAGGAATGGAGATCAGAGGGTTGGCGACCGGTTATTGAGTGGAGAAGAAGAAGAATAA

Coding sequence (CDS)

ATGGAAGTTAAATGTGTAGCTGAGGCAAATCCGGCGTCGTACGGAGGAGTGGTGAAGAAGTTCGGCTATCGCGAGGACTTGACGACATTGGTCAGCCGAAGACACCGATTGCAGGCTACGTTTCGACGTGAGGCGCGGCTCGACGGAAATGAAGACGAGGAACAGCAAAAGCGGTTGTACGTTGAACGGAAGAGGAATGGAGATCAGAGGGTTGGCGACCGGTTATTGAGTGGAGAAGAAGAAGAATAA

Protein sequence

MEVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDGNEDEEQQKRLYVERKRNGDQRVGDRLLSGEEEE

Homology

[Close]

BLAST of IVF0004650 vs. ExPASy TrEMBL
Match: A0A5D3D0G0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2434G00020 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 2  EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDGNEDEEQQKRLYV 61
          EVKCVAE +P SYGG +KKFGYRED TT VSR  RL+  FRRE R DG +DE QQK+L V
Sbjct: 7  EVKCVAEVDPTSYGGAMKKFGYREDSTTTVSRSRRLKVRFRRETRFDGKDDEAQQKQLCV 66

Query: 62 ERKRNGDQRVGDRLLSGEEEE 83
          ERKRNGDQR GDRL +GEEEE
Sbjct: 67 ERKRNGDQRGGDRLSNGEEEE 87

[Close]

BLAST of IVF0004650 vs. ExPASy TrEMBL
Match: A0A5A7U3Q7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001640 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 2   EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDGNEDEEQQKRLYV 61
           EVKCVAE +P SYGG +KKFGYRED TT VSRR RL+A FRRE R DG EDE QQKRL V
Sbjct: 105 EVKCVAEVDPMSYGGAMKKFGYREDSTTTVSRRRRLKARFRRETRFDGKEDEAQQKRLCV 164

Query: 62  ERKRNGDQRVGDRLLSGEEEE 83
           E K NGD+R GDRL +GEEEE
Sbjct: 165 EWKGNGDRRGGDRLSNGEEEE 185

[Close]

BLAST of IVF0004650 vs. ExPASy TrEMBL
Match: A0A5A7SPT6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00190 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 2  EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDG 50
          EV+CVAEA+   Y G + KFG RED T  V+RR RLQA FRREARLDG
Sbjct: 37 EVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDG 84

[Close]

BLAST of IVF0004650 vs. NCBI nr
Match: TYK17673.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 1.34e-26
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 2  EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDGNEDEEQQKRLYV 61
          EVKCVAE +P SYGG +KKFGYRED TT VSR  RL+  FRRE R DG +DE QQK+L V
Sbjct: 7  EVKCVAEVDPTSYGGAMKKFGYREDSTTTVSRSRRLKVRFRRETRFDGKDDEAQQKQLCV 66

Query: 62 ERKRNGDQRVGDRLLSGEEEE 82
          ERKRNGDQR GDRL +GEEEE
Sbjct: 67 ERKRNGDQRGGDRLSNGEEEE 87

[Close]

BLAST of IVF0004650 vs. NCBI nr
Match: KAA0048089.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 3.46e-26
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 2   EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDGNEDEEQQKRLYV 61
           EVKCVAE +P SYGG +KKFGYRED TT VSRR RL+A FRRE R DG EDE QQKRL V
Sbjct: 105 EVKCVAEVDPMSYGGAMKKFGYREDSTTTVSRRRRLKARFRRETRFDGKEDEAQQKRLCV 164

Query: 62  ERKRNGDQRVGDRLLSGEEEE 82
           E K NGD+R GDRL +GEEEE
Sbjct: 165 EWKGNGDRRGGDRLSNGEEEE 185

[Close]

BLAST of IVF0004650 vs. NCBI nr
Match: KAA0033202.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 6.83e-09
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 2  EVKCVAEANPASYGGVVKKFGYREDLTTLVSRRHRLQATFRREARLDG 49
          EV+CVAEA+   Y G + KFG RED T  V+RR RLQA FRREARLDG
Sbjct: 37 EVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDG 84

The following BLAST results are available for this feature:

BLAST of IVF0004650 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0G0	1.3e-22	72.84	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2434G00020 P...	[more]
A0A5A7U3Q7	3.0e-22	74.07	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001640 P...	[more]
A0A5A7SPT6	1.6e-07	66.67	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G001...	[more]

BLAST of IVF0004650 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK17673.1	1.34e-26	72.84	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048089.1	3.46e-26	74.07	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033202.1	6.83e-09	66.67	gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis ...	[more]

BLAST of IVF0004650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004650.1	IVF0004650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding