IVF0003863 (gene) Melon (IVF77) v1

Overview


Name	IVF0003863
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr12: 10849281 .. 10849513 (-)
RNA-Seq Expression	IVF0003863
Synteny	IVF0003863

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTTAATGATGAAGAGATGAAGTTCAACATTGTCAACGTAATGAAGTTTTCCGTTGATGTTGAGAACTGCAGTGTGATGGAGTCCCTCGGATGGGACTATTCGAGGAAGAAGCCTATTATGAGTTGTTTAGCACTGAAGAATTCCATGAGGAAGATGAATCAGATTATGTACTAGAAGAAGTGAACGCCATACGTGGCGAAAAGAAGTTTGAACCTTTGGATCTATAA

mRNA sequence

ATGCATTTTAATGATGAAGAGATGAAGTTCAACATTGTCAACGTAATGAAGTTTTCCGTTGATGTTGAGAACTGCAGTGAAGAAGCCTATTATGAGTTGTTTAGCACTGAAGAATTCCATGAGGAAGATGAATCAGATTATGTACTAGAAGAAGTGAACGCCATACGTGGCGAAAAGAAGTTTGAACCTTTGGATCTATAA

Coding sequence (CDS)

ATGCATTTTAATGATGAAGAGATGAAGTTCAACATTGTCAACGTAATGAAGTTTTCCGTTGATGTTGAGAACTGCAGTGAAGAAGCCTATTATGAGTTGTTTAGCACTGAAGAATTCCATGAGGAAGATGAATCAGATTATGTACTAGAAGAAGTGAACGCCATACGTGGCGAAAAGAAGTTTGAACCTTTGGATCTATAA

Protein sequence

MHFNDEEMKFNIVNVMKFSVDVENCSEEAYYELFSTEEFHEEDESDYVLEEVNAIRGEKKFEPLDL

Homology

[Close]

BLAST of IVF0003863 vs. ExPASy TrEMBL
Match: A0A5A7V931 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001730 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-17
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MHFNDEEMKFNIVNVMKFSVDVEN-----------CSEEAYYELFSTEEFHEEDESDYVL 60
           MHFN+EE+ FN++N MKF  +VEN           C EEAYYELFSTEEF EEDE DY+L
Sbjct: 207 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 266

Query: 61  EEVNAIRGEKKFEPLDL 67
           EEVNA+ GEKKF+PLDL
Sbjct: 267 EEVNAVSGEKKFKPLDL 283

[Close]

BLAST of IVF0003863 vs. ExPASy TrEMBL
Match: A0A5D3DTC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002140 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-17
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MHFNDEEMKFNIVNVMKFSVDVEN-----------CSEEAYYELFSTEEFHEEDESDYVL 60
           MHFN+EE+ FN++N MKF  +VEN           C EEAYYELFSTEEF EEDE DY+L
Sbjct: 183 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 242

Query: 61  EEVNAIRGEKKFEPLDL 67
           EEVNA+ GEKKF+PLDL
Sbjct: 243 EEVNAVSGEKKFKPLDL 259

[Close]

BLAST of IVF0003863 vs. ExPASy TrEMBL
Match: A0A5D3BYK3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00360 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.0e-14
Identity = 48/77 (62.34%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 1   MHFNDEEMKFNIVNVMKFSVDVENCS-----------EEAYYELFSTEEFHEEDESDYVL 60
           M FNDEE+KFNIVNV+KF  DVENCS           EEA YELFST EF EED+ +Y+L
Sbjct: 76  MSFNDEEIKFNIVNVIKFPSDVENCSAIESFEWDYCEEEACYELFSTNEFLEEDKPNYIL 135

Query: 61  EEVNAIRGEKKFEPLDL 67
           EEVN +  E KFE LDL
Sbjct: 136 EEVNPVSDENKFESLDL 152

[Close]

BLAST of IVF0003863 vs. ExPASy TrEMBL
Match: A0A5D3C2R8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G002090 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1   MHFNDEEMKFNIVNVMKFSVDVENCS-----------EEAYYELFSTEEFHEEDESDYVL 60
           MHFNDEE+KFN+VN MKF +D +N +           EE Y ELFST+EF EE++ +Y+L
Sbjct: 29  MHFNDEEVKFNVVNAMKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYIL 88

Query: 61  EEVNAIRGEKKFEPLDL 67
           EE NA+ GE+KFE LDL
Sbjct: 89  EEENAMSGERKFESLDL 105

[Close]

BLAST of IVF0003863 vs. ExPASy TrEMBL
Match: A0A5A7TL87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2741G00320 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-12
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 1   MHFNDEEMKFNIVNVMKFSVDVENCS-----------EEAYYELFSTEEFHEEDESDYVL 60
           MHFNDEE+KFN+VN MKF +D +N +           E  Y ELFST+EF EE++ +Y+L
Sbjct: 147 MHFNDEEVKFNVVNAMKFPIDDKNYTVIKSFGWVYFKEGVYEELFSTKEFFEEEDPNYIL 206

Query: 61  EEVNAIRGEKKFEPLDL 67
           EE NA+ GE+KFE LDL
Sbjct: 207 EEENAMSGERKFESLDL 223

[Close]

BLAST of IVF0003863 vs. NCBI nr
Match: TYK26585.1 (uncharacterized protein E5676_scaffold313G002140 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 5.70e-24
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MHFNDEEMKFNIVNVMKFSVDVEN-----------CSEEAYYELFSTEEFHEEDESDYVL 60
           MHFN+EE+ FN++N MKF  +VEN           C EEAYYELFSTEEF EEDE DY+L
Sbjct: 183 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 242

Query: 61  EEVNAIRGEKKFEPLDL 66
           EEVNA+ GEKKF+PLDL
Sbjct: 243 EEVNAVSGEKKFKPLDL 259

[Close]

BLAST of IVF0003863 vs. NCBI nr
Match: KAA0062395.1 (uncharacterized protein E6C27_scaffold154G001730 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 8.93e-24
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MHFNDEEMKFNIVNVMKFSVDVEN-----------CSEEAYYELFSTEEFHEEDESDYVL 60
           MHFN+EE+ FN++N MKF  +VEN           C EEAYYELFSTEEF EEDE DY+L
Sbjct: 207 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 266

Query: 61  EEVNAIRGEKKFEPLDL 66
           EEVNA+ GEKKF+PLDL
Sbjct: 267 EEVNAVSGEKKFKPLDL 283

[Close]

BLAST of IVF0003863 vs. NCBI nr
Match: KAA0066655.1 (uncharacterized protein E6C27_scaffold979G00870 [Cucumis melo var. makuwa] >TYK04098.1 uncharacterized protein E5676_scaffold2119G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 6.96e-20
Identity = 48/77 (62.34%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 1   MHFNDEEMKFNIVNVMKFSVDVENCS-----------EEAYYELFSTEEFHEEDESDYVL 60
           M FNDEE+KFNIVNV+KF  DVENCS           EEA YELFST EF EED+ +Y+L
Sbjct: 76  MSFNDEEIKFNIVNVIKFPSDVENCSAIESFEWDYCEEEACYELFSTNEFLEEDKPNYIL 135

Query: 61  EEVNAIRGEKKFEPLDL 66
           EEVN +  E KFE LDL
Sbjct: 136 EEVNPVSDENKFESLDL 152

[Close]

BLAST of IVF0003863 vs. NCBI nr
Match: TYK05498.1 (uncharacterized protein E5676_scaffold83G002090 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.76e-18
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1   MHFNDEEMKFNIVNVMKFSVDVENCS-----------EEAYYELFSTEEFHEEDESDYVL 60
           MHFNDEE+KFN+VN MKF +D +N +           EE Y ELFST+EF EE++ +Y+L
Sbjct: 29  MHFNDEEVKFNVVNAMKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYIL 88

Query: 61  EEVNAIRGEKKFEPLDL 66
           EE NA+ GE+KFE LDL
Sbjct: 89  EEENAMSGERKFESLDL 105

[Close]

BLAST of IVF0003863 vs. NCBI nr
Match: KAA0044273.1 (uncharacterized protein E6C27_scaffold2741G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 8.66e-17
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 1   MHFNDEEMKFNIVNVMKFSVDVENCS-----------EEAYYELFSTEEFHEEDESDYVL 60
           MHFNDEE+KFN+VN MKF +D +N +           E  Y ELFST+EF EE++ +Y+L
Sbjct: 147 MHFNDEEVKFNVVNAMKFPIDDKNYTVIKSFGWVYFKEGVYEELFSTKEFFEEEDPNYIL 206

Query: 61  EEVNAIRGEKKFEPLDL 66
           EE NA+ GE+KFE LDL
Sbjct: 207 EEENAMSGERKFESLDL 223

The following BLAST results are available for this feature:

BLAST of IVF0003863 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003863 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V931	1.0e-17	64.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DTC1	1.0e-17	64.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BYK3	7.0e-14	62.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C2R8	1.0e-12	55.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TL87	6.5e-12	54.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0003863 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26585.1	5.70e-24	64.94	uncharacterized protein E5676_scaffold313G002140 [Cucumis melo var. makuwa]	[more]
KAA0062395.1	8.93e-24	64.94	uncharacterized protein E6C27_scaffold154G001730 [Cucumis melo var. makuwa]	[more]
KAA0066655.1	6.96e-20	62.34	uncharacterized protein E6C27_scaffold979G00870 [Cucumis melo var. makuwa] >TYK0...	[more]
TYK05498.1	1.76e-18	55.84	uncharacterized protein E5676_scaffold83G002090 [Cucumis melo var. makuwa]	[more]
KAA0044273.1	8.66e-17	54.55	uncharacterized protein E6C27_scaffold2741G00320 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0003863 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003863.1	IVF0003863.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity