IVF0003022 (gene) Melon (IVF77) v1

Overview


Name	IVF0003022
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr01: 25085658 .. 25092671 (+)
RNA-Seq Expression	IVF0003022
Synteny	IVF0003022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAAAGGGAATGAGCTTAGAGTATGGAGGAGACTTGGTACTTCCAGAGGACATAATTGGTAGAGTCAAGACAAATGTGCAGGAGATTGCAAATGTTGGACAACAAGAAGAGAGCAGAGGTGGGAACGTATATGTGTTTCCTAGACGGGAGGATTCAATGGGAATGTGGTAGGTAGGGGATTTGGTTGGTAGAGGATAGGTAGGAGTTATTGGGGTTGATGCCCTAAATCTCGTGGTCTTGTATTTTGTAATTGTATATATTATACAAACTTTTTATTTATCTAATAAAATAAAGTGTTTTATTTTATTTGACATTTAGTTGCATTAACCCACAAAACCAATAAACTAACATCCAAGGTTATCTTCTGTAACCTAAACATGTATGTGGAGACATACAAGTGGATCATGTTTAAGTGATAACCTAAATGGTCCGTAGTAAAAGGATAAGGTTGGATACCTTATCCTGGTGACACTACAAATACGACATACTTTGTAGTTTTTACAATTGTTCTAAAGTGCTACAAATGATTTGATCCTAATCATTCATGTTGAGACATTAGAGCGGGGGTATTCTATACAAAGATTTTGTATAAGAACGAACCATGTCTCTCTTATTAACACTGTTATTAGTTAAGACTACATTTCACCAGGATGACTATAAGTGACTTGACCTGAATCCTGAGTGAGTTGTGAACTCTTGCCTTTAAAGGCAATCCTTTGATTTGCATGGGTGAGAGTGGCCTACGTAGCCGACTTAATATGCCTACCATTTGGGGAATTCACTACTATAGATAGAGTAAGTAGATAAATTGCTCTCTTAAGAGCTGATTTCAGGGCTTGAACAATGTGGCGCCATACTCTCTCTTGGCCTGAGAGGAGTTCAGTTATAGTAGGACTATAATTATTGTTCATTAGAGGAATCAATGGTACTTAAGGAGTTAGATGTAATTACAGGGGCAAAACAGTAATTTTGACCTAGCTGTACTTACGAGCAATTTGTGAAGTGTCATTACACTGTTGATTAGTTATATCTAATGGATACAAAAATATATCTACAGTAAGAAGAGTGCAACTATTAGTCTTTAGTGGAACGACCAATAGTTTATGAATAGAGATTAATTTAATTAAAAAGTTTAATCAATTAATCTCATTTCATTGGAGCTTCATGTGTAGGTCTATAAGGTCCCCTTGTTAGCTCAATAAAGATAAATGAGAATCAAATTGTTTTGGTTTAATTTGAATTGTTCAAATTGATTAAAGGGAATAAATTGTATTTGATATATTATAATGTAAAGTTTTTGTGAGAGAAGTTAATATTTGAATATGATTCAAATAATAATAATAATATGAATAAGATTCATAAATAAACTATAGATTAAAATTAATATGGATTCGATTCATATTAGAACTATAGATTATATGAGAGATCTAAACTATTGGTTATATTATATATGATACGATATAAAGTATATATTATATGAGATATAATATATATTAATTTAATTAAATCTAATTAATTTTTTAAAAATAAATAGAATGAATAACTCCCTTGGGAGTTATTCTACGTGGGAAAGAGGGAGGAAGTTATAACTTCCTCCTCCATATCAATAATGGTTAAGGTTTGTTTTAAAAGAAAAGAGTGTTTTTTTTAGACCCTCTTATCAATCTCTCCGTATTCCAAAAAGGTAATAGAATTCTCTCAAAAAAATTTCCTCACCAAAATTACAGAAGCCCACAACTCTCTGTGATTCTTTACTTGGAGAATAACAAGGAAAATTTTGTGGTGTCTTAGAAGCTTGGAAGAAGAGTTCTTTAAGGTTCTACAAAGGTTAGTTTCTTTTCACATTTTTCCTTCATGAGAAGAATGCTTAAGTTTTGTTTATTGTTTTTCTTTGAATTTATTGGTTTTACAAATTGAATTTCACTTGCACGGTGTTCATACGCTTCCGCTTTGGGAATTCCATTCCTTGAATTGGTATCAGAGCCAAATCGTGCATTTGTTTTTTCAAATTTTGAAACAAAATTCAAAGAAAAGGTGGGTATTTTTTTTCTCTGCATTGTTGAATGTGGGTTGCAAAATAGATGTTTTCGATTTTGGCACCTTAGATTACAGTTTTTTCATTAATTTTATTGATGTAAGGGGCTGTTGTTTAGGCCATTTAATTCTGTAATCGAGTCTATAAGTCCGTGTGGTTCGAGGCAAGTGTTGCTGGGAAGATGGACGATTTTCGGAGGCATTACCGAGGATTTTTTTTTTCAATTCTGTACAGAATAGCAGAATTGCAGTAGCGTTTGTTAAAAAAAAAAGTCGCAAGCAGATATATTATTTATGCGCGCCCTTGAAGTACCATCAATTTGTGTATGGTTCTATGGTTGGTCATCCACCATTGTTATAGGAGGTCGTAGCTTTGAATTCTAGAATGTGCAGTTTTTTCATTTTTTTTGTTTTATTAATTAAATTAATATAATTTGATTATATTAATTAAATTAATATAATTTGATTATATTAATTTGTTTCTTTAGGGGTGCCAAATTCGGTCTAGTTTGCTATTTAATCTTTTAATGCATGTGATGTTTGATTAAACTAATTATATGCATATCGTATGTCATATAGTTTAAAATCTCACCTTAGAATTATAATTATCATGCATTATTCTTAAATATAAGTGTTATATTTTATTTGCATGATTTTCTAAGCATGCTCATGCATCATATTTAATATAATTGTTATATTATATGAATGTATAATTAATATATCCATGCATCTTCCTATATTTTAAAATGTTGTATTATATAGTTTGATTGATTGATGTTTTTATTTTCATTGCATTAATATAATTGTGGTATTGTGTGATGAAAATGAAAATGTATTGAGCTTGTCATTACTTAGTGAATATAATCATTAAATGACATTAGAAATGCATGTTTATAGGTTTTAATTATTTTCTTTTCTTATAAGTGTTATAAGTTTATGAATTTAGAATTAAAATCTATAATAAAGAGTTGCATGCTAACATAAGGTCACAGTTAGTTTTAAATAGTTTAAAATTAATTCACCTAGACCTTAATGAATAATATTTCTAATGAGATTAGAAATAGGATTAATCTTTTCTCGTTTTAATAGGATTAAAATGATATCAATAAAAGATTAAATTTATAAAATATTTGTCTATAAGGGACCTTTGTCTAAGGAAGATTCTGTCTAAGCTGGGGTACTTAAGCTGACGGTAATGGAACACCCCTACCTAGGAACTGACCTGAAAGGTGAATTAGTCAAACATTTTATAAGCATGCAATACATGATTATATTTATCAAATTGTTTGATGAACAATAATCATTTATTGTAAAACTATCAAATATAAGAGTTATATTGGGTCAATTTAACAATGGGCTTAGATAAATAATTAGCCGTATTTTCTAAGTTAATTAATTTTTAAGTAAAACACTAAGTGGGAGGAAATGAGGTATATGATACTTCATTTTTCTTTTCATGTTTCTCCTTAAACATTCACACTTTGAGACTTATGCTCGGTCTCGAGGCACCTTTGCTTGTGTCCCCCTACGGGTGGTGTTTGTTTAAGTCAATAACAAGGTGAATGGAGATAGTGTTTATAGTAAGTGGGAGAGGGATGCATGTCAACACATCCCGTGGTCTCTTTCATTAGTTTCTAGTAAATTCTCATGCTTGGCCTTGAGGTACCTTTGCTTGTGTGCCCCTACGGAAGGTGTTTGTATTAGATTTTACTCAAACTCCAGAAATGGATAGGATTTCTTTAGGTTTTGCTCCAATCAGTGTTTTCCCTACGGATTACTTATTGGGGTGGAACTCTAGAATCTAAAATGAAGGGTTACATTTACAAGAAATTTTTAAGTAAGTTAATCATTTCTTGACTAAACAATGATGACTAACTATTATAGGAATAAGAGTTATTCTGGTGTAATTTTAAGTTGAGATTGTCTCAATTTAGTGAAGGGATAATTAATCACCCTAGAGGTTTTTATCCTACCTTACTGAAGCATAATTGCAAAATAGATATAACTTAGGATATATTAAAATTTTGCTAAATTGATTGGTTTTATATGGAAAATACTAGTATAACTAATATAAATAAATTGTATGTTTTCAGCAATTTGATATTGACGAGTGCTACTCTGAATATGCTGGCTGCTGATAAGCTTAATTGAAATAATTATGCATCTTGGAAAAATACTATCAACATTGTGCTAATCATTGATGACTTTATATTTGTCCTAGTTAAGGAGTATCTTCAAGTCCCAACTGCTAATGCAACTCGAACTGTTCGAGAAGCATATGAGCGCTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATTTTGGCAAGCTTATCTGAAGTATTGACCAAGAAACATGAATCAATGCTCACTGCTCGTGAGATCATGGACTCCTTGCAGGAGATGTTAGTCAGACCTTTTATCAGATTAAGCATGATGCTCTGAAATATATTTATAATGCCCGTATGAATGAGGGAGCCTCAGTGCGAGAACATGTTCTCAACATGATGGTTCATTTCAACGTGGTAGGAATGAATGGGGCTGTCATCGATGAAGCCAGTCGGGTTAGCTTTATTTTGGAATCTTTGCCAGAGAGTTTCCTGCAATTTAGAAGCAAAGCTGTTATGAATAAGGTTGCTTATACCCTTACCACCCTTCTCAACGAGCTACAGACTTTCGAGTTTCTGATTAAAATCATGGGATGAAAGGGAGAGGCAAATGTTGCTACTTCCACATGAAAGTTTCATAGAGGTTCGACCTCTGGAACCAAGTCTGTGCCTTCTTCATCTGGCAATAAGAAGTGGAAGAAGAAGAAGGGTGGCCAAGGAAATAAAGCTAACCCCGCTACTGCTAAAACGAGAAAGAAAGCTAAGGCTGCAAAGGGAATATGTTTCCATTGCAACCAAGAGGGACATTGGAAGAGAAACTGTCCCAAGTACTTGGCAGAAAAGAAGAAGGCGAAACAAGGTAAATGTGATTTACTAGTGCTAGAGACTTGTTTAGTGAAAAATGATGATTCAGCCTGGATAATAAATTCAGGTGCCACTAATCATGTTTGTTCTTCATTTTAGGGAATTAGTTCCTGGCGGCAGTTGGAGACTTGAGAGATGACGTGCGAGTTGGAACTGGGCATGTCGTCTCAACGATTGCAGTGGAAGGGCTTCGACTTTGTTTACAGAAATCTTTTCTTTTATTAGGAAATGTATATGTTGTTCCTGATTTAAAAAAGAACTTGATTTCTATAAAGTGCTTACTAGAACAATCTTACTCGTTAACTTTTAATGTAAATAAAGTGTGTATTTGCAAAAATGGTAATGAGATGTGTTCTGCAAAGTTAGAAAATAATCTTTATGTGTTAAGATTATTAACATCTAAAGCCCTTCTTAATATTGAAATGTTCAAAACTGCAGTGACTCAAAATAAAAGACTTAATATTTCTCCAGAAGAAAATGCTCATCTTTGGCACCTAAGATTAGGGCACATGAATCTCAATAGAATTGAGAAATTAGTAAAGAATGGGCTTCTAAGCGAGTTAGAAGAAATTCCTTACCTGTATGTGAGTCATGCCTTGAAGGTAAGATGACCAAAAGACCTTTTACTGGAAAAGGTCATATTTCCAAAGAACCCCTAGAACTTGTACATTCAGATCTATGTGGTCCTATGAATGCTAAAGCAAGAGGAGGATTTGAATATTTCATCACTTTTACTGATGATTATTCAAGATATGGGTATGTTTATTTAATGCAACATAAGTCTGAAGCCCTTGAAAAGTTCAAGGAATACAAGGCTGAAGTTGAAAACAAATTAAGTAAAACTATTAAAACATTTCGGTCGGATCGAGGTGGAGAGTATATGGATTTGAAATTTCAAAACTATTTGATGGAATGTGAAATTGTATCTCAACTCTCAGCACCTGGTACACCTCAACAGAATGGTGTATTAGAAAGGAGAAATCGAACCTTGTTGGACATGGTTTGGTCTATGATGAGTTACGCTCACTTACCTAATTCGTTTCGGGGTTATGCAGTGCAAGCTACAGTCTATATTTTGAATTGTGTTCCATCTAAAAGTATTTCTGAAATACCTTTGAAATTATGGATTGGTCATAAAGGTAGTTTACGTCATTTCAGAATCTGGGGTTGTCAAGCACACGTGCTTGAGACGAATCCAAAGAAATTGGAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGATGGTTATTTCTATGGTCTTAAAGATAATAAAGTGTTTGTATCGACAAATGCTACATTTTTAGAAGAGGACCACATAAGGGAGTACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAATGAAAGTACTGAACTTTCAACAAGAGTTGTTGAAGAGCCTAGTACATTAGCAAGAGTTGTTCATGTCAGTTCATCTATTAGGATACGTCAACCTAAATCATTGGGCGAACCTCGACGAAGTGGGAGGGTTACAAACTTACCTATTCATTATATGAGTTTAACGGAAACCTTAACTGTCATATCTGATGGCAACATTGGGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTGAATTGGAATCTATGTACTTCAATTTAGTCTGGGATCTTGTAGATCAACCTGATGGGGTAAAACCTATAGGTTGTAAATGGATCTACAAGAGAAAAAGAGGTGCAGATGGTAAGGTACAAACTTTTAAAGCTAGACTAGTGGCAAAGGGTTATACCCAAGTTGAGGGAGTTGACTATGAGAAGATTTTCTCATCTGTTGCCATGTTAAAGTCTATTCGAATACTTTTGTCCATTGCTGCATATTTTGACTATGAGATTTGGCAAATGTATGTGAAAACTACCATTTTGAATGACAATCTTGAGGAGACCATTTATATGCAACAACCAGAAGGATTCATAATTCCATGTTAA

mRNA sequence

ATGGCGAAAAAGGGAATGAGCTTAGAGTATGGAGGAGACTTGGTACTTCCAGAGGACATAATTGGTAGAGTCAAGACAAATGTGCAGGAGATTGCAAATGTTGGACAACAAGAAGAGAGCAGAGTTAAGGAGTATCTTCAAGTCCCAACTGCTAATGCAACTCGAACTGTTCGAGAAGCATATGAGCGCTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATTTTGGCAAGCTTATCTGAAGTATTGACCAAGAAACATGAATCAATGCTCACTGCTCGTGAGATCATGGACTCCTTGCAGGAGATAGGTTCGACCTCTGGAACCAAGTCTGTGCCTTCTTCATCTGGCAATAAGAAGTGGAAGAAGAAGAAGGGTGGCCAAGGAAATAAAGCTAACCCCGCTACTGCTAAAACGAGAAAGAAAGCTAAGGCTGCAAAGGGAATATGTTTCCATTGCAACCAAGAGGGACATTGGAAGAGAAACTGTCCCAAGTACTTGGCAGAAAAGAAGAAGGCGAAACAAGAATGGGCTTCTAAGCGAGTTAGAAGAAATTCCTTACCTGTATGTGAGTCATGCCTTGAAGGTAAGATGACCAAAAGACCTTTTACTGGAAAAGGTCATATTTCCAAAGAACCCCTAGAACTTGTACATTCAGATCTATGTGGTCCTATGAATGCTAAAGCAAGAGGAGGATTTGAATATTTCATCACTTTTACTGATGATTATTCAAGATATGGGTATGTTTATTTAATGCAACATAAGTCTGAAGCCCTTGAAAAGTTCAAGGAATACAAGGCTGAAGTTGAAAACAAATTAAGTAAAACTATTAAAACATTTCGGTCGGATCGAGGTGGAGAGTATATGGATTTGAAATTTCAAAACTATTTGATGGAATGTGAAATTGTATCTCAACTCTCAGCACCTGGTACACCTCAACAGAATGGTGTATTAGAAAGGAGAAATCGAACCTTGTTGGACATGGTTTGGTCTATGATGAGTTACGCTCACTTACCTAATTCGTTTCGGGGTTATGCAGTGCAAGCTACAGTCTATATTTTGAATTGTGTTCCATCTAAAAGTATTTCTGAAATACCTTTGAAATTATGGATTGGTCATAAAGGTAGTTTACGTCATTTCAGAATCTGGGGTTGTCAAGCACACGTGCTTGAGACGAATCCAAAGAAATTGGAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGATGGTTATTTCTATGGTCTTAAAGATAATAAAGTGTTTGTATCGACAAATGCTACATTTTTAGAAGAGGACCACATAAGGGAGTACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAATGAAAGTACTGAACTTTCAACAAGAGTTGTTGAAGAGCCTAGTACATTAGCAAGAGTTGTTCATGTCAGTTCATCTATTAGGATACGTCAACCTAAATCATTGGGCGAACCTCGACGAAGTGGGAGGGTTACAAACTTACCTATTCATTATATGAGTTTAACGGAAACCTTAACTGTCATATCTGATGGCAACATTGGGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTGAATTGGAATCTATGTACTTCAATTTAGTCTGGGATCTTGTAGATCAACCTGATGGGGTAAAACCTATAGGTTGTAAATGGATCTACAAGAGAAAAAGAGGTGCAGATGGTAAGGTACAAACTTTTAAAGCTAGACTAGTGGCAAAGGGTTATACCCAAGTTGAGGGAGTTGACTATGAGAAGATTTTCTCATCTGTTGCCATGTTAAAGTCTATTCGAATACTTTTGTCCATTGCTGCATATTTTGACTATGAGATTTGGCAAATGTATGTGAAAACTACCATTTTGAATGACAATCTTGAGGAGACCATTTATATGCAACAACCAGAAGGATTCATAATTCCATGTTAA

Coding sequence (CDS)

ATGGCGAAAAAGGGAATGAGCTTAGAGTATGGAGGAGACTTGGTACTTCCAGAGGACATAATTGGTAGAGTCAAGACAAATGTGCAGGAGATTGCAAATGTTGGACAACAAGAAGAGAGCAGAGTTAAGGAGTATCTTCAAGTCCCAACTGCTAATGCAACTCGAACTGTTCGAGAAGCATATGAGCGCTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATTTTGGCAAGCTTATCTGAAGTATTGACCAAGAAACATGAATCAATGCTCACTGCTCGTGAGATCATGGACTCCTTGCAGGAGATAGGTTCGACCTCTGGAACCAAGTCTGTGCCTTCTTCATCTGGCAATAAGAAGTGGAAGAAGAAGAAGGGTGGCCAAGGAAATAAAGCTAACCCCGCTACTGCTAAAACGAGAAAGAAAGCTAAGGCTGCAAAGGGAATATGTTTCCATTGCAACCAAGAGGGACATTGGAAGAGAAACTGTCCCAAGTACTTGGCAGAAAAGAAGAAGGCGAAACAAGAATGGGCTTCTAAGCGAGTTAGAAGAAATTCCTTACCTGTATGTGAGTCATGCCTTGAAGGTAAGATGACCAAAAGACCTTTTACTGGAAAAGGTCATATTTCCAAAGAACCCCTAGAACTTGTACATTCAGATCTATGTGGTCCTATGAATGCTAAAGCAAGAGGAGGATTTGAATATTTCATCACTTTTACTGATGATTATTCAAGATATGGGTATGTTTATTTAATGCAACATAAGTCTGAAGCCCTTGAAAAGTTCAAGGAATACAAGGCTGAAGTTGAAAACAAATTAAGTAAAACTATTAAAACATTTCGGTCGGATCGAGGTGGAGAGTATATGGATTTGAAATTTCAAAACTATTTGATGGAATGTGAAATTGTATCTCAACTCTCAGCACCTGGTACACCTCAACAGAATGGTGTATTAGAAAGGAGAAATCGAACCTTGTTGGACATGGTTTGGTCTATGATGAGTTACGCTCACTTACCTAATTCGTTTCGGGGTTATGCAGTGCAAGCTACAGTCTATATTTTGAATTGTGTTCCATCTAAAAGTATTTCTGAAATACCTTTGAAATTATGGATTGGTCATAAAGGTAGTTTACGTCATTTCAGAATCTGGGGTTGTCAAGCACACGTGCTTGAGACGAATCCAAAGAAATTGGAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGATGGTTATTTCTATGGTCTTAAAGATAATAAAGTGTTTGTATCGACAAATGCTACATTTTTAGAAGAGGACCACATAAGGGAGTACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAATGAAAGTACTGAACTTTCAACAAGAGTTGTTGAAGAGCCTAGTACATTAGCAAGAGTTGTTCATGTCAGTTCATCTATTAGGATACGTCAACCTAAATCATTGGGCGAACCTCGACGAAGTGGGAGGGTTACAAACTTACCTATTCATTATATGAGTTTAACGGAAACCTTAACTGTCATATCTGATGGCAACATTGGGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTGAATTGGAATCTATGTACTTCAATTTAGTCTGGGATCTTGTAGATCAACCTGATGGGGTAAAACCTATAGGTTGTAAATGGATCTACAAGAGAAAAAGAGGTGCAGATGGTAAGGTACAAACTTTTAAAGCTAGACTAGTGGCAAAGGGTTATACCCAAGTTGAGGGAGTTGACTATGAGAAGATTTTCTCATCTGTTGCCATGTTAAAGTCTATTCGAATACTTTTGTCCATTGCTGCATATTTTGACTATGAGATTTGGCAAATGTATGTGAAAACTACCATTTTGAATGACAATCTTGAGGAGACCATTTATATGCAACAACCAGAAGGATTCATAATTCCATGTTAA

Protein sequence

MAKKGMSLEYGGDLVLPEDIIGRVKTNVQEIANVGQQEESRVKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAREIMDSLQEIGSTSGTKSVPSSSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQEWASKRVRRNSLPVCESCLEGKMTKRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLERRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRHFRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDHIREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRVTNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRILLSIAAYFDYEIWQMYVKTTILNDNLEETIYMQQPEGFIIPC

Homology

[Close]

BLAST of IVF0003022 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-78
Identity = 180/496 (36.29%), Postives = 275/496 (55.44%), Query Frame = 0


Query: 190 CESCLEGKMTKRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYV 249
           C+ CL GK  +  F          L+LV+SD+CGPM  ++ GG +YF+TF DD SR  +V
Sbjct: 457 CDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWV 516

Query: 250 YLMQHKSEALEKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAP 309
           Y+++ K +  + F+++ A VE +  + +K  RSD GGEY   +F+ Y     I  + + P
Sbjct: 517 YILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVP 576

Query: 310 GTPQQNGVLERRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSIS-EIPLK 369
           GTPQ NGV ER NRT+++ V SM+  A LP SF G AVQ   Y++N  PS  ++ EIP +
Sbjct: 577 GTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPER 636

Query: 370 LWIGHKGSLRHFRIWGCQ--AHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKD--- 429
           +W   + S  H +++GC+  AHV +    KL+ +S  C+F+GY     + + Y L D   
Sbjct: 637 VWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGD---EEFGYRLWDPVK 696

Query: 430 NKVFVSTNATFLEEDHIREYKPRSKIVLNEL---------------SNEST--ELSTRVV 489
            KV  S +  F  E  +R     S+ V N +               S EST  E+S +  
Sbjct: 697 KKVIRSRDVVF-RESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGE 756

Query: 490 EEPSTLARVVHVSSSIRIRQPKSLGEP-----RRSGRVTNLPIHYMSLTETLTVISDGNI 549
           +    + +   +   +   +  + GE      RRS R       Y S TE + +  D   
Sbjct: 757 QPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPS-TEYVLISDD--- 816

Query: 550 GDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLVDQPDGVKPIGCKWIYKRKRGAD 609
            +P + K+ +   +K++ +KAM  E+ES+  N  + LV+ P G +P+ CKW++K K+  D
Sbjct: 817 REPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGD 876

Query: 610 GKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRILLSIAAYFDYEIWQMYVKTTIL 658
            K+  +KARLV KG+ Q +G+D+++IFS V  + SIR +LS+AA  D E+ Q+ VKT  L
Sbjct: 877 CKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFL 936

[Close]

BLAST of IVF0003022 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 213.4 bits (542), Expect = 7.8e-54
Identity = 160/574 (27.87%), Postives = 251/574 (43.73%), Query Frame = 0


Query: 186  SLPVCESCLEGKMTKRPF---TGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDD 245
            S  +CE CL GK  + PF     K HI K PL +VHSD+CGP+         YF+ F D 
Sbjct: 451  SCEICEPCLNGKQARLPFKQLKDKTHI-KRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQ 510

Query: 246  YSRYGYVYLMQHKSEALEKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEI 305
            ++ Y   YL+++KS+    F+++ A+ E   +  +     D G EY+  + + + ++  I
Sbjct: 511  FTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGI 570

Query: 306  VSQLSAPGTPQQNGVLERRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSI 365
               L+ P TPQ NGV ER  RT+ +   +M+S A L  SF G AV    Y++N +PS+++
Sbjct: 571  SYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRAL 630

Query: 366  ---SEIPLKLWIGHKGSLRHFRIWGCQAHV-LETNPKKLEPRSKLCLFVGY-PKGTR--- 425
               S+ P ++W   K  L+H R++G   +V ++    K + +S   +FVGY P G +   
Sbjct: 631  VDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWD 690

Query: 426  --DGYFYGLKD---------NKVFVSTNATFLEEDHIREYK----PRSKIVLNELSNEST 485
              +  F   +D         N   V     FL++    E K       KI+  E  NES 
Sbjct: 691  AVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESK 750

Query: 486  E-------------------------LSTRVVEEPSTLARVVHVSSS------------- 545
            E                         + T    E      +  +  S             
Sbjct: 751  ECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKK 810

Query: 546  ----IRIRQPKSLGEP------------------------------RRSGRVTNLP-IHY 605
                  + + K  G P                              RRS R+   P I Y
Sbjct: 811  RKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISY 870

Query: 606  MSLTETL--TVISDGNIGD--PLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLVDQP 657
                 +L   V++   I +  P +F +     DK  W +A+N EL +   N  W +  +P
Sbjct: 871  NEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRP 930

[Close]

BLAST of IVF0003022 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.6e-46
Identity = 151/596 (25.34%), Postives = 245/596 (41.11%), Query Frame = 0


Query: 190  CESCLEGKMTKRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYV 249
            C  CL  K  K PF+     S  PLE ++SD+       +   + Y++ F D ++RY ++
Sbjct: 500  CSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWL 559

Query: 250  YLMQHKSEALEKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAP 309
            Y ++ KS+  E F  +K  +EN+    I TF SD GGE++ L    Y  +  I    S P
Sbjct: 560  YPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPP 619

Query: 310  GTPQQNGVLERRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSIS-EIPLK 369
             TP+ NG+ ER++R +++   +++S+A +P ++  YA    VY++N +P+  +  E P +
Sbjct: 620  HTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQ 679

Query: 370  LWIGHKGSLRHFRIWGCQAH--VLETNPKKLEPRSKLCLFVGYPKGTRDGYF-YGLKDNK 429
               G   +    R++GC  +  +   N  KL+ +S+ C+F+GY   T+  Y    L+ ++
Sbjct: 680  KLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSL-TQSAYLCLHLQTSR 739

Query: 430  VFVSTNATFLEE-----------DHIREYKPRSKIV------------------------ 489
            +++S +  F E              ++E +  S  V                        
Sbjct: 740  LYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHH 799

Query: 490  ------------------------------------------------------LNELSN 549
                                                                      S+
Sbjct: 800  AATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSS 859

Query: 550  ESTELSTRVVEEPSTLARVVHVSS-----------------------SIRIRQPKSLGEP 609
            ++T  +    E PS LA+ +   +                       SI I  P  L + 
Sbjct: 860  QNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQI 919

Query: 610  RRSGRVTNLPIHYMSLTETLTVI----------SDGNIGDPLTFKKAMEDVDKDEWIKAM 659
              +     L  H M       +I          S     +P T  +A++D   + W  AM
Sbjct: 920  VNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKD---ERWRNAM 979

[Close]

BLAST of IVF0003022 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.3e-45
Identity = 154/618 (24.92%), Postives = 256/618 (41.42%), Query Frame = 0


Query: 182  VRRNSLPV---------CESCLEGKMTKRPFTGKGHISKEPLELVHSDLCGPMNAKARGG 241
            +  +SLPV         C  C   K  K PF+     S +PLE ++SD+       +   
Sbjct: 462  ISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDN 521

Query: 242  FEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLK 301
            + Y++ F D ++RY ++Y ++ KS+  + F  +K+ VEN+    I T  SD GGE++ L+
Sbjct: 522  YRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR 581

Query: 302  FQNYLMECEIVSQLSAPGTPQQNGVLERRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVY 361
              +YL +  I    S P TP+ NG+ ER++R +++M  +++S+A +P ++  YA    VY
Sbjct: 582  --DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVY 641

Query: 362  ILNCVPSKSIS-EIPLKLWIGHKGSLRHFRIWGCQAH--VLETNPKKLEPRSKLCLFVGY 421
            ++N +P+  +  + P +   G   +    +++GC  +  +   N  KLE +SK C F+GY
Sbjct: 642  LINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGY 701

Query: 422  PKGTRDGYF-YGLKDNKVFVSTNATFLEE------------------------------- 481
               T+  Y    +   +++ S +  F E                                
Sbjct: 702  SL-TQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTL 761

Query: 482  --------------DHIREYKPR-----SKIVLNELSNE---STELSTRVVEEPSTLAR- 541
                           H+ +  PR     S +   ++S+    S+ +S+    EP+  +  
Sbjct: 762  PTTPLVLPAPPCLGPHL-DTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHN 821

Query: 542  ------VVHVSSSIRIRQP---------KSLGEPRRSGRVTNLPIHYMSLTETLTVISDG 601
                    H + +     P          S   P ++  +   PI    +    T IS+ 
Sbjct: 822  GPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEP 881

Query: 602  NI---------------------------------------------------------- 659
            N                                                           
Sbjct: 882  NSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAAN 941

[Close]

BLAST of IVF0003022 vs. ExPASy Swiss-Prot
Match: Q12490 (Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-BL PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-15
Identity = 53/176 (30.11%), Postives = 89/176 (50.57%), Query Frame = 0


Query: 190 CESCLEGKMTK-RPFTG---KGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSR 249
           C  CL GK TK R   G   K   S EP + +H+D+ GP++   +    YFI+FTD+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696

Query: 250 YGYVYLMQHKSE--ALEKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIV 309
           + +VY +  + E   L+ F    A ++N+   ++   + DRG EY +     +L +  I 
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756

Query: 310 SQLSAPGTPQQNGVLERRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPS 360
              +     + +GV ER NRTLLD   + +  + LPN     A++ +  + N + S
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLAS 812

[Close]

BLAST of IVF0003022 vs. ExPASy TrEMBL
Match: A0A5D3BDY3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00250 PE=4 SV=1)

HSP 1 Score: 1180.6 bits (3053), Expect = 0.0e+00
Identity = 610/702 (86.89%), Postives = 614/702 (87.46%), Query Frame = 0


Query: 40  SRVKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTA---RE- 99
           S VKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTA   RE 
Sbjct: 5   SLVKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAPSVREH 64

Query: 100 --------------------------IMDSLQEI---------------GSTSGTKSVPS 159
                                     I++SL E                GSTSGTKSVPS
Sbjct: 65  VLNMMVHFNVVGMNGAVIDEASRVSFILESLPESFLQFRSKAVMNKFHRGSTSGTKSVPS 124

Query: 160 SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK 219
           SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK
Sbjct: 125 SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK 184

Query: 220 QEWASKR-----------------------------------VRRNSLPVCESCLEGKMT 279
           Q   +KR                                   +  NSLPVCESCLEGKMT
Sbjct: 185 QVTQNKRLNISPEENAHLWHLRLGHMNLNRIEKLVKNGLLSELEENSLPVCESCLEGKMT 244

Query: 280 KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL 339
           KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL
Sbjct: 245 KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL 304

Query: 340 EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE 399
           EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE
Sbjct: 305 EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE 364

Query: 400 RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH 459
           RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH
Sbjct: 365 RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH 424

Query: 460 FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH 519
           FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH
Sbjct: 425 FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH 484

Query: 520 IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV 579
           IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV
Sbjct: 485 IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV 544

Query: 580 TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV 639
           TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV
Sbjct: 545 TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV 604

Query: 640 DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI 662
           DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI
Sbjct: 605 DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI 664

[Close]

BLAST of IVF0003022 vs. ExPASy TrEMBL
Match: A0A5A7SWF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00290 PE=4 SV=1)

HSP 1 Score: 1180.6 bits (3053), Expect = 0.0e+00
Identity = 610/702 (86.89%), Postives = 614/702 (87.46%), Query Frame = 0


Query: 40  SRVKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTA---RE- 99
           S VKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTA   RE 
Sbjct: 5   SLVKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAPSVREH 64

Query: 100 --------------------------IMDSLQEI---------------GSTSGTKSVPS 159
                                     I++SL E                GSTSGTKSVPS
Sbjct: 65  VLNMMVHFNVVGMNGAVIDEASRVSFILESLPESFLQFRSKAVMNKFHRGSTSGTKSVPS 124

Query: 160 SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK 219
           SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK
Sbjct: 125 SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK 184

Query: 220 QEWASKR-----------------------------------VRRNSLPVCESCLEGKMT 279
           Q   +KR                                   +  NSLPVCESCLEGKMT
Sbjct: 185 QVTQNKRLNISPEENAHLWHLRLGHMNLNRIEKLVKNGLLSELEENSLPVCESCLEGKMT 244

Query: 280 KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL 339
           KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL
Sbjct: 245 KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL 304

Query: 340 EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE 399
           EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE
Sbjct: 305 EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE 364

Query: 400 RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH 459
           RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH
Sbjct: 365 RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH 424

Query: 460 FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH 519
           FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH
Sbjct: 425 FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH 484

Query: 520 IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV 579
           IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV
Sbjct: 485 IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV 544

Query: 580 TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV 639
           TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV
Sbjct: 545 TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV 604

Query: 640 DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI 662
           DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI
Sbjct: 605 DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI 664

[Close]

BLAST of IVF0003022 vs. ExPASy TrEMBL
Match: A0A5D3BHG7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G00150 PE=4 SV=1)

HSP 1 Score: 1053.9 bits (2724), Expect = 2.8e-304
Identity = 550/702 (78.35%), Postives = 567/702 (80.77%), Query Frame = 0


Query: 42  VKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAREIMDSLQ 101
           V+E  QVP ANAT+TVRE YERWAK NEK RAYILASLSEVL KKHESMLTAREIMDSLQ
Sbjct: 40  VEECPQVPAANATQTVREPYERWAKGNEKGRAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 102 EI---------------------------------------------------------- 161
           E+                                                          
Sbjct: 100 EMFGQASYQINHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQGQKGE 159

Query: 162 ------------GSTSGTKSVPSSSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICF 221
                       GSTSGTKS+PSSSGNKKWKKKKGGQGNKAN A AKT KK+KA KGICF
Sbjct: 160 ANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKSKATKGICF 219

Query: 222 HCNQEGHWKRNCPKYLAEKKKAKQEWAS-KRVRR------------NSLPVCESCLEGKM 281
           H NQEGHWKRNCPKYLAEKKKAKQ   +  R+ R            NSLP+CESCLEGKM
Sbjct: 220 HYNQEGHWKRNCPKYLAEKKKAKQGHINLNRIERLVKNGILSELEENSLPICESCLEGKM 279

Query: 282 TKRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEA 341
           TKRPFTGKGH +KEPLELVHSDLCGPMN KARG FEYFITFTDDYSRYGYVYLMQHKSEA
Sbjct: 280 TKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGEFEYFITFTDDYSRYGYVYLMQHKSEA 339

Query: 342 LEKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVL 401
           LEKFKEYKAEVEN LSKTIKTFRSDRGGEYMDLKFQNYLMECEI+SQLSAPGTPQQNGV 
Sbjct: 340 LEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECEILSQLSAPGTPQQNGVS 399

Query: 402 ERRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLR 461
           ERRNRTLLDMV SM+SYAHLPNSF GYAVQ  VYILNCVPSKS+SE PLKLW G KGSLR
Sbjct: 400 ERRNRTLLDMVRSMISYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLR 459

Query: 462 HFRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEED 521
           HFRIWGC AHVLE NPKKLEPRSKLCLFVGYPKGTR GYFY  KDNKVFVSTNATFLEED
Sbjct: 460 HFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEED 519

Query: 522 HIREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGR 581
           HIRE+KPRSKIVLNELS E+TE STRVVEEPS L RVVHV SS R  QP+SL EPRRSGR
Sbjct: 520 HIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGR 579

Query: 582 VTNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDL 641
           VTNLPI YMSLTETLTVISDG+I DPLTFKKAMEDVDKDEWIKAMNLELESMYFN VWDL
Sbjct: 580 VTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDL 639

Query: 642 VDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIR 661
           VDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYE+ FS VAMLKSIR
Sbjct: 640 VDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIR 699

[Close]

BLAST of IVF0003022 vs. ExPASy TrEMBL
Match: A0A5A7SNP8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002160 PE=4 SV=1)

HSP 1 Score: 1019.6 bits (2635), Expect = 5.8e-294
Identity = 543/734 (73.98%), Postives = 555/734 (75.61%), Query Frame = 0


Query: 42  VKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAREIMDSLQ 101
           V++  QVP ANATRTVRE YERWAKANEKARAYILASLSEVL KKHESMLTAREIMDSLQ
Sbjct: 102 VEDCPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 161

Query: 102 EI---------------------------------------------------------- 161
           E+                                                          
Sbjct: 162 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAVMNEAVIDEASQVSFIL 221

Query: 162 ---------------------------------------------------------GST 221
                                                                    GST
Sbjct: 222 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGST 281

Query: 222 SGTKSVPSSSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKY 281
           SGTKS+PSSSGNKKWKKKKGGQGNKAN A AKT KKAKAAKGICF CNQEGHWKRNCPKY
Sbjct: 282 SGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFLCNQEGHWKRNCPKY 341

Query: 282 LAEKKKAKQEWASKRVRRNSLPVCESCLEGKMTKRPFTGKGHISKEPLELVHSDLCGPMN 341
           LA+KKKAKQ                    GKMTKRPFTGKGH +KEPLELVHSDLCGPMN
Sbjct: 342 LAKKKKAKQ--------------------GKMTKRPFTGKGHRAKEPLELVHSDLCGPMN 401

Query: 342 AKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENKLSKTIKTFRSDRGG 401
            KARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVEN LSKTIKTFRSDRGG
Sbjct: 402 VKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGG 461

Query: 402 EYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLERRNRTLLDMVWSMMSYAHLPNSFRGYA 461
           EYMDLKFQNYLMEC IVSQLSAP TPQQNGV ERRNRTLLDMV SMMSYAHLPNSF GYA
Sbjct: 462 EYMDLKFQNYLMECGIVSQLSAPDTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYA 521

Query: 462 VQATVYILNCVPSKSISEIPLKLWIGHKGSLRHFRIWGCQAHVLETNPKKLEPRSKLCLF 521
           VQ  VYILNCVPSKS+SE PLKLW GHKGSLRHFRIWGC AHVLE NPKKLEPRSKLCLF
Sbjct: 522 VQTAVYILNCVPSKSVSETPLKLWNGHKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLF 581

Query: 522 VGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDHIREYKPRSKIVLNELSNESTELSTRVV 581
           VGYPKGTR GYFY  KDNKVFVSTNATFLEEDHIRE+KPRSKIVLNELS E+TE STRVV
Sbjct: 582 VGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVV 641

Query: 582 EEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRVTNLPIHYMSLTETLTVISDGNIGDPLT 641
           EEPS L RVVHV SS R  QP+SL EPRRSGRVTNLPI YMSLTETLTVISDG+I DPLT
Sbjct: 642 EEPSALIRVVHVRSSTRTHQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLT 701

Query: 642 FKKAMEDVDKDEWIKAMNLELESMYFNLVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQT 661
           FKKAMEDVDKDEWIKAMNLELESMYFN VWDLVDQPDGVKPIGCKWIYKRKRGADGKVQT
Sbjct: 702 FKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQT 761

[Close]

BLAST of IVF0003022 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 989.2 bits (2556), Expect = 8.4e-285
Identity = 561/917 (61.18%), Postives = 573/917 (62.49%), Query Frame = 0


Query: 42   VKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAREIMDSLQ 101
            VKE  QVP ANATRTVRE YERWAKANEKARAYILASLSEVL KKHESMLTAREIMDSLQ
Sbjct: 157  VKECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 216

Query: 102  EI---------------------------------------------------------- 161
            E+                                                          
Sbjct: 217  EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 276

Query: 162  ---------------------------------------------------------GST 221
                                                                     GST
Sbjct: 277  ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGST 336

Query: 222  SGTKSVPSSSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKY 281
            SGTKS+PSSSGNKKWKKKKGGQGNKAN A AKT KKAKAAKGICFHCNQEGHWKRNCPKY
Sbjct: 337  SGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKY 396

Query: 282  LAEKKKAKQ--------------------------------------EW----------- 341
            LAEKKKAKQ                                       W           
Sbjct: 397  LAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMR 456

Query: 342  ------------------------------------------------------------ 401
                                                                        
Sbjct: 457  VGTGHVVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVF 516

Query: 402  ---------------------------------------ASKRVR--------------- 461
                                                    +KR++               
Sbjct: 517  IYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLG 576

Query: 462  --------------------RNSLPVCESCLEGKMTKRPFTGKGHISKEPLELVHSDLCG 521
                                 NSLPVCESCLEGKMTKRPFTGKGH +KEPLELVHSDLCG
Sbjct: 577  HINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCG 636

Query: 522  PMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENKLSKTIKTFRSD 581
            PMN KARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVEN LSKTIKTFRSD
Sbjct: 637  PMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSD 696

Query: 582  RGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLERRNRTLLDMVWSMMSYAHLPNSFR 641
            RGGEYMDLKFQNYLMEC IVSQLSAPGTPQQNGV ERRNRTLLDMV SMMSYAHLPNSF 
Sbjct: 697  RGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFW 756

Query: 642  GYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRHFRIWGCQAHVLETNPKKLEPRSKL 661
            GYAVQ  VYILNCVPSKS+SE PLKLW G KGSLRHFRIWGC AHVLE NPKKLEPRSKL
Sbjct: 757  GYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKL 816

[Close]

BLAST of IVF0003022 vs. NCBI nr
Match: TYJ96675.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 1173 bits (3035), Expect = 0.0
Identity = 610/702 (86.89%), Postives = 614/702 (87.46%), Query Frame = 0


Query: 40  SRVKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTA---RE- 99
           S VKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTA   RE 
Sbjct: 5   SLVKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAPSVREH 64

Query: 100 --------------------------IMDSLQEI---------------GSTSGTKSVPS 159
                                     I++SL E                GSTSGTKSVPS
Sbjct: 65  VLNMMVHFNVVGMNGAVIDEASRVSFILESLPESFLQFRSKAVMNKFHRGSTSGTKSVPS 124

Query: 160 SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK 219
           SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK
Sbjct: 125 SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK 184

Query: 220 QEWASKRVR-----------------------------------RNSLPVCESCLEGKMT 279
           Q   +KR+                                     NSLPVCESCLEGKMT
Sbjct: 185 QVTQNKRLNISPEENAHLWHLRLGHMNLNRIEKLVKNGLLSELEENSLPVCESCLEGKMT 244

Query: 280 KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL 339
           KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL
Sbjct: 245 KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL 304

Query: 340 EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE 399
           EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE
Sbjct: 305 EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE 364

Query: 400 RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH 459
           RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH
Sbjct: 365 RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH 424

Query: 460 FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH 519
           FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH
Sbjct: 425 FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH 484

Query: 520 IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV 579
           IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV
Sbjct: 485 IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV 544

Query: 580 TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV 639
           TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV
Sbjct: 545 TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV 604

Query: 640 DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI 661
           DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI
Sbjct: 605 DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI 664

[Close]

BLAST of IVF0003022 vs. NCBI nr
Match: KAA0034863.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 1173 bits (3035), Expect = 0.0
Identity = 610/702 (86.89%), Postives = 614/702 (87.46%), Query Frame = 0


Query: 40  SRVKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTA---RE- 99
           S VKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTA   RE 
Sbjct: 5   SLVKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAPSVREH 64

Query: 100 --------------------------IMDSLQEI---------------GSTSGTKSVPS 159
                                     I++SL E                GSTSGTKSVPS
Sbjct: 65  VLNMMVHFNVVGMNGAVIDEASRVSFILESLPESFLQFRSKAVMNKFHRGSTSGTKSVPS 124

Query: 160 SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK 219
           SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK
Sbjct: 125 SSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK 184

Query: 220 QEWASKRVR-----------------------------------RNSLPVCESCLEGKMT 279
           Q   +KR+                                     NSLPVCESCLEGKMT
Sbjct: 185 QVTQNKRLNISPEENAHLWHLRLGHMNLNRIEKLVKNGLLSELEENSLPVCESCLEGKMT 244

Query: 280 KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL 339
           KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL
Sbjct: 245 KRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEAL 304

Query: 340 EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE 399
           EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE
Sbjct: 305 EKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLE 364

Query: 400 RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH 459
           RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH
Sbjct: 365 RRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRH 424

Query: 460 FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH 519
           FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH
Sbjct: 425 FRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEEDH 484

Query: 520 IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV 579
           IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV
Sbjct: 485 IREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGRV 544

Query: 580 TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV 639
           TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV
Sbjct: 545 TNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLV 604

Query: 640 DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI 661
           DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI
Sbjct: 605 DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRI 664

[Close]

BLAST of IVF0003022 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 1046 bits (2706), Expect = 0.0
Identity = 550/702 (78.35%), Postives = 567/702 (80.77%), Query Frame = 0


Query: 42  VKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAREIMDSLQ 101
           V+E  QVP ANAT+TVRE YERWAK NEK RAYILASLSEVL KKHESMLTAREIMDSLQ
Sbjct: 40  VEECPQVPAANATQTVREPYERWAKGNEKGRAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 102 EI---------------------------------------------------------- 161
           E+                                                          
Sbjct: 100 EMFGQASYQINHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQGQKGE 159

Query: 162 ------------GSTSGTKSVPSSSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICF 221
                       GSTSGTKS+PSSSGNKKWKKKKGGQGNKAN A AKT KK+KA KGICF
Sbjct: 160 ANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKSKATKGICF 219

Query: 222 HCNQEGHWKRNCPKYLAEKKKAKQEWAS-KRVRR------------NSLPVCESCLEGKM 281
           H NQEGHWKRNCPKYLAEKKKAKQ   +  R+ R            NSLP+CESCLEGKM
Sbjct: 220 HYNQEGHWKRNCPKYLAEKKKAKQGHINLNRIERLVKNGILSELEENSLPICESCLEGKM 279

Query: 282 TKRPFTGKGHISKEPLELVHSDLCGPMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEA 341
           TKRPFTGKGH +KEPLELVHSDLCGPMN KARG FEYFITFTDDYSRYGYVYLMQHKSEA
Sbjct: 280 TKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGEFEYFITFTDDYSRYGYVYLMQHKSEA 339

Query: 342 LEKFKEYKAEVENKLSKTIKTFRSDRGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVL 401
           LEKFKEYKAEVEN LSKTIKTFRSDRGGEYMDLKFQNYLMECEI+SQLSAPGTPQQNGV 
Sbjct: 340 LEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECEILSQLSAPGTPQQNGVS 399

Query: 402 ERRNRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLR 461
           ERRNRTLLDMV SM+SYAHLPNSF GYAVQ  VYILNCVPSKS+SE PLKLW G KGSLR
Sbjct: 400 ERRNRTLLDMVRSMISYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLR 459

Query: 462 HFRIWGCQAHVLETNPKKLEPRSKLCLFVGYPKGTRDGYFYGLKDNKVFVSTNATFLEED 521
           HFRIWGC AHVLE NPKKLEPRSKLCLFVGYPKGTR GYFY  KDNKVFVSTNATFLEED
Sbjct: 460 HFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEED 519

Query: 522 HIREYKPRSKIVLNELSNESTELSTRVVEEPSTLARVVHVSSSIRIRQPKSLGEPRRSGR 581
           HIRE+KPRSKIVLNELS E+TE STRVVEEPS L RVVHV SS R  QP+SL EPRRSGR
Sbjct: 520 HIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGR 579

Query: 582 VTNLPIHYMSLTETLTVISDGNIGDPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDL 641
           VTNLPI YMSLTETLTVISDG+I DPLTFKKAMEDVDKDEWIKAMNLELESMYFN VWDL
Sbjct: 580 VTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDL 639

Query: 642 VDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIR 660
           VDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYE+ FS VAMLKSIR
Sbjct: 640 VDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIR 699

[Close]

BLAST of IVF0003022 vs. NCBI nr
Match: KAA0026233.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 1012 bits (2617), Expect = 0.0
Identity = 542/729 (74.35%), Postives = 552/729 (75.72%), Query Frame = 0


Query: 47  QVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAREIMDSLQEI--- 106
           QVP ANATRTVRE YERWAKANEKARAYILASLSEVL KKHESMLTAREIMDSLQE+   
Sbjct: 107 QVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQ 166

Query: 107 ------------------------------------------------------------ 166
                                                                       
Sbjct: 167 ASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAVMNEAVIDEASQVSFILESLPE 226

Query: 167 ----------------------------------------------------GSTSGTKS 226
                                                               GSTSGTKS
Sbjct: 227 SFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKS 286

Query: 227 VPSSSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKYLAEKK 286
           +PSSSGNKKWKKKKGGQGNKAN A AKT KKAKAAKGICF CNQEGHWKRNCPKYLA+KK
Sbjct: 287 MPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFLCNQEGHWKRNCPKYLAKKK 346

Query: 287 KAKQEWASKRVRRNSLPVCESCLEGKMTKRPFTGKGHISKEPLELVHSDLCGPMNAKARG 346
           KAKQ                    GKMTKRPFTGKGH +KEPLELVHSDLCGPMN KARG
Sbjct: 347 KAKQ--------------------GKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARG 406

Query: 347 GFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENKLSKTIKTFRSDRGGEYMDL 406
           GFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVEN LSKTIKTFRSDRGGEYMDL
Sbjct: 407 GFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDL 466

Query: 407 KFQNYLMECEIVSQLSAPGTPQQNGVLERRNRTLLDMVWSMMSYAHLPNSFRGYAVQATV 466
           KFQNYLMEC IVSQLSAP TPQQNGV ERRNRTLLDMV SMMSYAHLPNSF GYAVQ  V
Sbjct: 467 KFQNYLMECGIVSQLSAPDTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAV 526

Query: 467 YILNCVPSKSISEIPLKLWIGHKGSLRHFRIWGCQAHVLETNPKKLEPRSKLCLFVGYPK 526
           YILNCVPSKS+SE PLKLW GHKGSLRHFRIWGC AHVLE NPKKLEPRSKLCLFVGYPK
Sbjct: 527 YILNCVPSKSVSETPLKLWNGHKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPK 586

Query: 527 GTRDGYFYGLKDNKVFVSTNATFLEEDHIREYKPRSKIVLNELSNESTELSTRVVEEPST 586
           GTR GYFY  KDNKVFVSTNATFLEEDHIRE+KPRSKIVLNELS E+TE STRVVEEPS 
Sbjct: 587 GTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSA 646

Query: 587 LARVVHVSSSIRIRQPKSLGEPRRSGRVTNLPIHYMSLTETLTVISDGNIGDPLTFKKAM 646
           L RVVHV SS R  QP+SL EPRRSGRVTNLPI YMSLTETLTVISDG+I DPLTFKKAM
Sbjct: 647 LIRVVHVRSSTRTHQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAM 706

Query: 647 EDVDKDEWIKAMNLELESMYFNLVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARL 660
           EDVDKDEWIKAMNLELESMYFN VWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARL
Sbjct: 707 EDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARL 766

[Close]

BLAST of IVF0003022 vs. NCBI nr
Match: KAA0062993.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 982 bits (2538), Expect = 0.0
Identity = 561/917 (61.18%), Postives = 573/917 (62.49%), Query Frame = 0


Query: 42   VKEYLQVPTANATRTVREAYERWAKANEKARAYILASLSEVLTKKHESMLTAREIMDSLQ 101
            VKE  QVP ANATRTVRE YERWAKANEKARAYILASLSEVL KKHESMLTAREIMDSLQ
Sbjct: 157  VKECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 216

Query: 102  EI---------------------------------------------------------- 161
            E+                                                          
Sbjct: 217  EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 276

Query: 162  ---------------------------------------------------------GST 221
                                                                     GST
Sbjct: 277  ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGST 336

Query: 222  SGTKSVPSSSGNKKWKKKKGGQGNKANPATAKTRKKAKAAKGICFHCNQEGHWKRNCPKY 281
            SGTKS+PSSSGNKKWKKKKGGQGNKAN A AKT KKAKAAKGICFHCNQEGHWKRNCPKY
Sbjct: 337  SGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKY 396

Query: 282  LAEKKKAKQ--------------------------------------EWA---------- 341
            LAEKKKAKQ                                       W           
Sbjct: 397  LAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMR 456

Query: 342  ------------------------------------------------------------ 401
                                                                        
Sbjct: 457  VGTGHVVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVF 516

Query: 402  ----------------------------------------SKRVR--------------- 461
                                                    +KR++               
Sbjct: 517  IYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLG 576

Query: 462  --------------------RNSLPVCESCLEGKMTKRPFTGKGHISKEPLELVHSDLCG 521
                                 NSLPVCESCLEGKMTKRPFTGKGH +KEPLELVHSDLCG
Sbjct: 577  HINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCG 636

Query: 522  PMNAKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENKLSKTIKTFRSD 581
            PMN KARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVEN LSKTIKTFRSD
Sbjct: 637  PMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSD 696

Query: 582  RGGEYMDLKFQNYLMECEIVSQLSAPGTPQQNGVLERRNRTLLDMVWSMMSYAHLPNSFR 641
            RGGEYMDLKFQNYLMEC IVSQLSAPGTPQQNGV ERRNRTLLDMV SMMSYAHLPNSF 
Sbjct: 697  RGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFW 756

Query: 642  GYAVQATVYILNCVPSKSISEIPLKLWIGHKGSLRHFRIWGCQAHVLETNPKKLEPRSKL 660
            GYAVQ  VYILNCVPSKS+SE PLKLW G KGSLRHFRIWGC AHVLE NPKKLEPRSKL
Sbjct: 757  GYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKL 816

[Close]

BLAST of IVF0003022 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 119.8 bits (299), Expect = 8.4e-27
Identity = 55/135 (40.74%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 523 DPLTFKKAMEDVDKDEWIKAMNLELESMYFNLVWDLVDQPDGVKPIGCKWIYKRKRGADG 582
           +P T+ +A E +    W  AM+ E+ +M     W++   P   KPIGCKW+YK K  +DG
Sbjct: 85  EPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 144

Query: 583 KVQTFKARLVAKGYTQVEGVDYEKIFSSVAMLKSIRILLSIAAYFDYEIWQMYVKTTILN 642
            ++ +KARLVAKGYTQ EG+D+ + FS V  L S++++L+I+A +++ + Q+ +    LN
Sbjct: 145 TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLN 204

Query: 643 DNLEETIYMQQPEGF 658
            +L+E IYM+ P G+
Sbjct: 205 GDLDEEIYMKLPPGY 216

[Close]

BLAST of IVF0003022 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-13
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 539 WIKAMNLELESMYFNLVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQ 598
           W +AM  EL+++  N  W LV  P     +GCKW++K K  +DG +   KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 599 VEGVDYEKIFSSVAMLKSIRILLSIA 625
            EG+ + + +S V    +IR +L++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of IVF0003022 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-07
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 322 NRTLLDMVWSMMSYAHLPNSFRGYAVQATVYILNCVPSKSIS-EIPLKLWIGHKGSLRHF 381
           NRT+++ V SM+    LP +FR  A    V+I+N  PS +I+  +P ++W     +  + 
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 382 RIWGCQAHVLETNPKKLEPRSK 403
           R +GC A++   +  KL+PR+K
Sbjct: 62  RRFGCVAYI-HCDEGKLKPRAK 82

The following BLAST results are available for this feature:

BLAST of IVF0003022 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.0e-78	36.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.8e-54	27.87	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.6e-46	25.34	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.3e-45	24.92	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q12490	1.9e-15	30.11	Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2...	[more]

BLAST of IVF0003022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDY3	0.0e+00	86.89	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G0025...	[more]
A0A5A7SWF4	0.0e+00	86.89	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G0029...	[more]
A0A5D3BHG7	2.8e-304	78.35	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G0015...	[more]
A0A5A7SNP8	5.8e-294	73.98	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00216...	[more]
A0A5A7V4M1	8.4e-285	61.18	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]

BLAST of IVF0003022 vs. NCBI nr


Match Name	Identity	Description
TYJ96675.1	86.89	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0034863.1	86.89	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ97618.1	78.35	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0026233.1	74.35	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062993.1	61.18	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0003022 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.4e-27	40.74	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.8e-13	40.70	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00710.1	3.3e-07	34.15	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 255..275
None	No IPR available	GENE3D	4.10.60.10		coord: 139..176 e-value: 1.3E-7 score: 33.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..139
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 523..656 coord: 142..445
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 149..165 e-value: 2.3E-4 score: 30.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 149..165 e-value: 1.3E-5 score: 25.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 150..165 score: 10.097754
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 553..659 e-value: 1.2E-31 score: 110.2
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 211..312 e-value: 1.8E-9 score: 37.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 209..374 score: 21.165533
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 206..385 e-value: 1.6E-33 score: 117.7
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 135..171
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 209..368

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003022.1	IVF0003022.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding