IVF0002050 (gene) Melon (IVF77) v1

Overview


Name	IVF0002050
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	sister chromatid cohesion 1 protein 1
Location	chr10: 16452857 .. 16453608 (+)
RNA-Seq Expression	IVF0002050
Synteny	IVF0002050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCTAATGACCGGACAAGTCAATGATGGTGCCGAGATTCCTCTGGAAGAACTTGGACCCAATATCATGGATAATGTTATGGAGATGGCTGAAAGAAATCAAATGGGTACACCTGGAAATTCCGGTATGTTTTCTTCATCTCAGCTAAAACATATAACATTCACTCCATCTCTATAGTAAGAACTTTTGAGATTGCCATGACTTGTTTTAGAAACATATGGTCTCTCCATATAAACAGGATTTGGAGTGAGGTCAGTTTCAAGCTCAGCATCTGAACATGATGTGCTATCAAAAAATTCAGGGACTGATTCTGTACGGTTAGTAGTACGAAAGCTTCAAGACGCTCCCTTTTGAACCCAAAACACGATTTTTTTTTTTAATTTAGGAAAAACACAATAACACGATGTGTTAACGATCAATAGGTTCAACAAGAAAAGGCCTTATTCTTCATCTAAGCGAAGTAGCGGAGGCCTCGAACCTGTAGCTGAGGAGAATCCATGGTCTCATCATTCTGATCCAAATTTCAAGTTAGCGAGGTTGTCTGAAAATGATCCAGGTAAGTAAAAAACACTTACCTATTCGGGATTGTTTCTCTATCTAGTTGAACTCTACTCACTACTTGCTCTAATTGATAATTTGCTTTCACAGATTTATTGGAAGAAACTGCATTGACACAAACTCAAGTTTCTCAAGCTGCTTTCAAGCATCCTCCTGCTGACAAGATAACTGATTCCATTCGAATGTAA

mRNA sequence

ATGGAGAAGCTAATGACCGGACAAGTCAATGATGGTGCCGAGATTCCTCTGGAAGAACTTGGACCCAATATCATGGATAATGTTATGGAGATGGCTGAAAGAAATCAAATGGGTACACCTGGAAATTCCGGATTTGGAGTGAGGTCAGTTTCAAGCTCAGCATCTGAACATGATGTGCTATCAAAAAATTCAGGGACTGATTCTGTACGGTTCAACAAGAAAAGGCCTTATTCTTCATCTAAGCGAAGTAGCGGAGGCCTCGAACCTGTAGCTGAGGAGAATCCATGGTCTCATCATTCTGATCCAAATTTCAAGTTAGCGAGGTTGTCTGAAAATGATCCAGATTTATTGGAAGAAACTGCATTGACACAAACTCAAGTTTCTCAAGCTGCTTTCAAGCATCCTCCTGCTGACAAGATAACTGATTCCATTCGAATGTAA

Coding sequence (CDS)

ATGGAGAAGCTAATGACCGGACAAGTCAATGATGGTGCCGAGATTCCTCTGGAAGAACTTGGACCCAATATCATGGATAATGTTATGGAGATGGCTGAAAGAAATCAAATGGGTACACCTGGAAATTCCGGATTTGGAGTGAGGTCAGTTTCAAGCTCAGCATCTGAACATGATGTGCTATCAAAAAATTCAGGGACTGATTCTGTACGGTTCAACAAGAAAAGGCCTTATTCTTCATCTAAGCGAAGTAGCGGAGGCCTCGAACCTGTAGCTGAGGAGAATCCATGGTCTCATCATTCTGATCCAAATTTCAAGTTAGCGAGGTTGTCTGAAAATGATCCAGATTTATTGGAAGAAACTGCATTGACACAAACTCAAGTTTCTCAAGCTGCTTTCAAGCATCCTCCTGCTGACAAGATAACTGATTCCATTCGAATGTAA

Protein sequence

MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

Homology

[Close]

BLAST of IVF0002050 vs. ExPASy TrEMBL
Match: A0A5D3E364 (Sister chromatid cohesion 1 protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00900 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.0e-74
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 60
           MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL
Sbjct: 406 MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 465

Query: 61  SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 120
           SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET
Sbjct: 466 SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 525

Query: 121 ALTQTQVSQAAFKHPPADKITDSIRM 147
           ALTQTQVSQAAFKHPPADKITDSIRM
Sbjct: 526 ALTQTQVSQAAFKHPPADKITDSIRM 551

[Close]

BLAST of IVF0002050 vs. ExPASy TrEMBL
Match: A0A5A7SX09 (Sister chromatid cohesion 1 protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00380 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.0e-74
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 60
           MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL
Sbjct: 403 MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 462

Query: 61  SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 120
           SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET
Sbjct: 463 SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 522

Query: 121 ALTQTQVSQAAFKHPPADKITDSIRM 147
           ALTQTQVSQAAFKHPPADKITDSIRM
Sbjct: 523 ALTQTQVSQAAFKHPPADKITDSIRM 548

[Close]

BLAST of IVF0002050 vs. ExPASy TrEMBL
Match: A0A1S3BZ41 (sister chromatid cohesion 1 protein 1 OS=Cucumis melo OX=3656 GN=LOC103495180 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.0e-74
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 60
           MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL
Sbjct: 407 MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 466

Query: 61  SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 120
           SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET
Sbjct: 467 SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 526

Query: 121 ALTQTQVSQAAFKHPPADKITDSIRM 147
           ALTQTQVSQAAFKHPPADKITDSIRM
Sbjct: 527 ALTQTQVSQAAFKHPPADKITDSIRM 552

[Close]

BLAST of IVF0002050 vs. ExPASy TrEMBL
Match: A0A0A0KQK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G211550 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.0e-70
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 60
           MEKLMTGQVN GAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL
Sbjct: 20  MEKLMTGQVNGGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 79

Query: 61  SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 120
           SKNSGTDS+RFNKKR YSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET
Sbjct: 80  SKNSGTDSLRFNKKRSYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 139

Query: 121 ALTQTQVSQAAFKHPPADKITDSIRM 147
           ALTQTQ++QAA K+PPADKITDSIRM
Sbjct: 140 ALTQTQLTQAAIKYPPADKITDSIRM 165

[Close]

BLAST of IVF0002050 vs. ExPASy TrEMBL
Match: A0A6J1GXZ1 (sister chromatid cohesion 1 protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458512 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.7e-49
Identity = 113/148 (76.35%), Postives = 123/148 (83.11%), Query Frame = 0


Query: 1   MEKLMTGQVNDG--AEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHD 60
           +EKL T  VND   AEI LEEL P+  +N+M MAERNQ+ TPGNSG GVRSVSSSASEH 
Sbjct: 415 IEKLRTKPVNDDIHAEILLEELRPDFRNNLMGMAERNQVVTPGNSGIGVRSVSSSASEHG 474

Query: 61  VLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLE 120
           V   N  T+SVR NKKRPYSSS++SSGGLEPVAEENPW HHSDPNFKLARLSENDPDLL 
Sbjct: 475 VFVSNPETNSVRSNKKRPYSSSRQSSGGLEPVAEENPW-HHSDPNFKLARLSENDPDLLV 534

Query: 121 ETALTQTQVSQAAFKHPPADKITDSIRM 147
           ETA TQTQV+Q A KHPPADKIT+SIRM
Sbjct: 535 ETAPTQTQVTQPAIKHPPADKITNSIRM 561

[Close]

BLAST of IVF0002050 vs. NCBI nr
Match: KAA0035874.1 (sister chromatid cohesion 1 protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 287 bits (735), Expect = 1.32e-91
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 60
           MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL
Sbjct: 403 MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 462

Query: 61  SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 120
           SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET
Sbjct: 463 SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 522

Query: 121 ALTQTQVSQAAFKHPPADKITDSIRM 146
           ALTQTQVSQAAFKHPPADKITDSIRM
Sbjct: 523 ALTQTQVSQAAFKHPPADKITDSIRM 548

[Close]

BLAST of IVF0002050 vs. NCBI nr
Match: TYK30322.1 (sister chromatid cohesion 1 protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 287 bits (735), Expect = 1.42e-91
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 60
           MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL
Sbjct: 406 MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 465

Query: 61  SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 120
           SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET
Sbjct: 466 SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 525

Query: 121 ALTQTQVSQAAFKHPPADKITDSIRM 146
           ALTQTQVSQAAFKHPPADKITDSIRM
Sbjct: 526 ALTQTQVSQAAFKHPPADKITDSIRM 551

[Close]

BLAST of IVF0002050 vs. NCBI nr
Match: XP_008454870.1 (PREDICTED: sister chromatid cohesion 1 protein 1 [Cucumis melo])

HSP 1 Score: 287 bits (735), Expect = 1.69e-91
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 60
           MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL
Sbjct: 407 MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 466

Query: 61  SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 120
           SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET
Sbjct: 467 SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 526

Query: 121 ALTQTQVSQAAFKHPPADKITDSIRM 146
           ALTQTQVSQAAFKHPPADKITDSIRM
Sbjct: 527 ALTQTQVSQAAFKHPPADKITDSIRM 552

[Close]

BLAST of IVF0002050 vs. NCBI nr
Match: KGN50276.2 (hypothetical protein Csa_005815 [Cucumis sativus])

HSP 1 Score: 273 bits (699), Expect = 3.16e-86
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 60
           MEKLMTGQVN GAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL
Sbjct: 397 MEKLMTGQVNGGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 456

Query: 61  SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 120
           SKNSGTDS+RFNKKR YSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET
Sbjct: 457 SKNSGTDSLRFNKKRSYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 516

Query: 121 ALTQTQVSQAAFKHPPADKITDSIRM 146
           ALTQTQ++QAA K+PPADKITDSIRM
Sbjct: 517 ALTQTQLTQAAIKYPPADKITDSIRM 542

[Close]

BLAST of IVF0002050 vs. NCBI nr
Match: XP_031742082.1 (sister chromatid cohesion 1 protein 1 [Cucumis sativus])

HSP 1 Score: 273 bits (699), Expect = 4.00e-86
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 60
           MEKLMTGQVN GAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL
Sbjct: 407 MEKLMTGQVNGGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVL 466

Query: 61  SKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 120
           SKNSGTDS+RFNKKR YSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET
Sbjct: 467 SKNSGTDSLRFNKKRSYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSENDPDLLEET 526

Query: 121 ALTQTQVSQAAFKHPPADKITDSIRM 146
           ALTQTQ++QAA K+PPADKITDSIRM
Sbjct: 527 ALTQTQLTQAAIKYPPADKITDSIRM 552

The following BLAST results are available for this feature:

BLAST of IVF0002050 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E364	2.0e-74	100.00	Sister chromatid cohesion 1 protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7SX09	2.0e-74	100.00	Sister chromatid cohesion 1 protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BZ41	2.0e-74	100.00	sister chromatid cohesion 1 protein 1 OS=Cucumis melo OX=3656 GN=LOC103495180 PE...	[more]
A0A0A0KQK0	3.0e-70	95.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G211550 PE=4 SV=1	[more]
A0A6J1GXZ1	1.7e-49	76.35	sister chromatid cohesion 1 protein 1-like isoform X1 OS=Cucurbita moschata OX=3...	[more]

BLAST of IVF0002050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035874.1	1.32e-91	100.00	sister chromatid cohesion 1 protein 1 [Cucumis melo var. makuwa]	[more]
TYK30322.1	1.42e-91	100.00	sister chromatid cohesion 1 protein 1 [Cucumis melo var. makuwa]	[more]
XP_008454870.1	1.69e-91	100.00	PREDICTED: sister chromatid cohesion 1 protein 1 [Cucumis melo]	[more]
KGN50276.2	3.16e-86	95.21	hypothetical protein Csa_005815 [Cucumis sativus]	[more]
XP_031742082.1	4.00e-86	95.21	sister chromatid cohesion 1 protein 1 [Cucumis sativus]	[more]

BLAST of IVF0002050 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..85
None	No IPR available	PANTHER	PTHR12585:SF64	SISTER CHROMATID COHESION 1 PROTEIN 1	coord: 27..146
IPR039781	Rad21/Rec8-like protein	PANTHER	PTHR12585	SCC1 / RAD21 FAMILY MEMBER	coord: 27..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002050.1	IVF0002050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033540	fatty acid beta-oxidation using acyl-CoA oxidase
biological_process	GO:0055088	lipid homeostasis
biological_process	GO:0001676	long-chain fatty acid metabolic process
biological_process	GO:0010032	meiotic chromosome condensation
biological_process	GO:0051754	meiotic sister chromatid cohesion, centromeric
biological_process	GO:0051455	monopolar spindle attachment to meiosis I kinetochore
biological_process	GO:0000038	very long-chain fatty acid metabolic process
biological_process	GO:0007062	sister chromatid cohesion
cellular_component	GO:0008278	cohesin complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0071949	FAD binding
molecular_function	GO:0005504	fatty acid binding
molecular_function	GO:0016401	palmitoyl-CoA oxidase activity