IVF0000899 (gene) Melon (IVF77) v1

Overview
NameIVF0000899
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionZf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-containing protein
Locationchr04: 17336257 .. 17336496 (-)
RNA-Seq ExpressionIVF0000899
SyntenyIVF0000899
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCAAGTGTATGGCATTGTAGCGCTCGTTGTGAGAGAAATGCTGCTGTCACGCTGGTGGAGTGTAACTCTTCAGTCTAAGTATGTGAATAAGGCAAGGCGCTGTTGGATATCCCAGGTAACTCGCTTGATACTGGCGAGAGCAAATCACAGGTCAGCGAGGGGAGATTCCCAAGTCTCAAATGAGCTTGCGATTGTGGTTGTTGTACTGGTTGGTAACTCACTACATGGTTATTGA

mRNA sequence

ATGATTCAAGTGTATGGCATTGTAGCGCTCGTTGTGAGAGAAATGCTGCTGTCACGCTGGTGGAGTGTAACTCTTCAGTCTAAGTATGTGAATAAGGCAAGGCGCTGTTGGATATCCCAGGTAACTCGCTTGATACTGGCGAGAGCAAATCACAGGTCAGCGAGGGGAGATTCCCAAGTCTCAAATGAGCTTGCGATTGTGGTTGTTGTACTGGTTGGTAACTCACTACATGGTTATTGA

Coding sequence (CDS)

ATGATTCAAGTGTATGGCATTGTAGCGCTCGTTGTGAGAGAAATGCTGCTGTCACGCTGGTGGAGTGTAACTCTTCAGTCTAAGTATGTGAATAAGGCAAGGCGCTGTTGGATATCCCAGGTAACTCGCTTGATACTGGCGAGAGCAAATCACAGGTCAGCGAGGGGAGATTCCCAAGTCTCAAATGAGCTTGCGATTGTGGTTGTTGTACTGGTTGGTAACTCACTACATGGTTATTGA

Protein sequence

MIQVYGIVALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRSARGDSQVSNELAIVVVVLVGNSLHGY
Homology
BLAST of IVF0000899 vs. ExPASy TrEMBL
Match: A0A0A0KBJ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178440 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.3e-16
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 0

Query: 2  IQVYGIVALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRSARGDSQVS 61
          I  YG+VALV R+ML++RWWSVT++SK VN ARRCWISQVTR+ILA+ N  SA G+   S
Sbjct: 7  IPTYGVVALVERKMLMTRWWSVTIRSKNVNMARRCWISQVTRVILAKVNPGSAMGNFLKS 66

Query: 62 N-ELAIVVVVLVGN 75
            ELAIV+VVLVGN
Sbjct: 67 QYELAIVIVVLVGN 80

BLAST of IVF0000899 vs. ExPASy TrEMBL
Match: A0A5D3C7R8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001840 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 9  ALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRSARGDS 59
          ALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHR +  ++
Sbjct: 19 ALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRLSSNEA 68

BLAST of IVF0000899 vs. ExPASy TrEMBL
Match: A0A5A7SKT6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003290 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.0e-11
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 1  MIQVYGIVALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHR 53
          MI VYG+VALVVR+ L+ RWWSVTL SK VN  RRC ISQVT +ILARANHR
Sbjct: 1  MIPVYGVVALVVRKKLVRRWWSVTLGSKKVNVVRRCLISQVTHMILARANHR 52

BLAST of IVF0000899 vs. ExPASy TrEMBL
Match: A0A5D3D1M5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001430 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.6e-11
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 8  VALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRSARGDSQVSNELAIV 67
          + LVV  ML+  WWSVT +SK +N ARRCWISQVTR +L RAN +S RGDS+VS    I 
Sbjct: 23 ILLVVGTMLMRCWWSVTSRSKNMNMARRCWISQVTREVLTRANPKSVRGDSRVSKSCGI- 82

Query: 68 VVVLVGNSLHGY 80
               G+SL+ Y
Sbjct: 83 ----AGDSLNNY 89

BLAST of IVF0000899 vs. ExPASy TrEMBL
Match: A0A5A7TQG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00660 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.0e-08
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 11  VVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRSARGDSQV 61
           V R+M + RWWS T +SK VN  R CWISQVTR+IL RAN RSA+GD QV
Sbjct: 51  VERKMWMRRWWSATPRSKNVNVVRCCWISQVTRMILERANLRSAKGDFQV 100

BLAST of IVF0000899 vs. NCBI nr
Match: KGN47035.1 (hypothetical protein Csa_021001 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 8.36e-23
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 0

Query: 2  IQVYGIVALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRSARGDSQVS 61
          I  YG+VALV R+ML++RWWSVT++SK VN ARRCWISQVTR+ILA+ N  SA G+   S
Sbjct: 7  IPTYGVVALVERKMLMTRWWSVTIRSKNVNMARRCWISQVTRVILAKVNPGSAMGNFLKS 66

Query: 62 N-ELAIVVVVLVGN 74
            ELAIV+VVLVGN
Sbjct: 67 QYELAIVIVVLVGN 80

BLAST of IVF0000899 vs. NCBI nr
Match: KAA0058462.1 (hypothetical protein E6C27_scaffold132G00500 [Cucumis melo var. makuwa] >TYK07284.1 hypothetical protein E5676_scaffold606G001840 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 2.32e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 9  ALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRSARGDS 58
          ALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHR +  ++
Sbjct: 19 ALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRLSSNEA 68

BLAST of IVF0000899 vs. NCBI nr
Match: KAA0026314.1 (hypothetical protein E6C27_scaffold19G003290 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 2.19e-15
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 1  MIQVYGIVALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHR 52
          MI VYG+VALVVR+ L+ RWWSVTL SK VN  RRC ISQVT +ILARANHR
Sbjct: 1  MIPVYGVVALVVRKKLVRRWWSVTLGSKKVNVVRRCLISQVTHMILARANHR 52

BLAST of IVF0000899 vs. NCBI nr
Match: TYK16359.1 (hypothetical protein E5676_scaffold21G001430 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 3.58e-14
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 8  VALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRSARGDSQVSNELAIV 67
          + LVV  ML+  WWSVT +SK +N ARRCWISQVTR +L RAN +S RGDS+VS    I 
Sbjct: 23 ILLVVGTMLMRCWWSVTSRSKNMNMARRCWISQVTREVLTRANPKSVRGDSRVSKSCGIA 82

Query: 68 VVVLVGNSLHGY 79
               G+SL+ Y
Sbjct: 83 -----GDSLNNY 89

BLAST of IVF0000899 vs. NCBI nr
Match: TYK04364.1 (hypothetical protein E5676_scaffold675G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.83e-11
Identity = 43/82 (52.44%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 2  IQVYGIVALVVREMLLSRWWSVTLQSKYVNKARRCWISQVTRLILARANHRSA------- 61
          I  Y +VAL VR+ML+ RWWSVT +SK VN AR C ISQVT +ILARAN R         
Sbjct: 5  ILAYNVVALAVRKMLMRRWWSVTPRSKNVNMARHCLISQVTHVILARANPRLLGIEAMQK 64

Query: 62 ---RGDSQVSNELAIVVVVLVG 73
             R  SQV      V VVL G
Sbjct: 65 LILRLRSQVKEGRKSVSVVLCG 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KBJ62.3e-1667.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178440 PE=4 SV=1[more]
A0A5D3C7R81.5e-1588.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SKT65.0e-1175.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D1M58.6e-1155.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TQG84.0e-0866.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KGN47035.18.36e-2367.57hypothetical protein Csa_021001 [Cucumis sativus][more]
KAA0058462.12.32e-2188.00hypothetical protein E6C27_scaffold132G00500 [Cucumis melo var. makuwa] >TYK0728... [more]
KAA0026314.12.19e-1575.00hypothetical protein E6C27_scaffold19G003290 [Cucumis melo var. makuwa][more]
TYK16359.13.58e-1455.56hypothetical protein E5676_scaffold21G001430 [Cucumis melo var. makuwa][more]
TYK04364.13.83e-1152.44hypothetical protein E5676_scaffold675G00350 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000899.1IVF0000899.1mRNA