IVF0000568 (gene) Melon (IVF77) v1

Overview


Name	IVF0000568
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	STE20/SPS1-related proline-alanine-rich protein kinase-like
Location	chr01: 1508348 .. 1508606 (-)
RNA-Seq Expression	IVF0000568
Synteny	IVF0000568

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAAGAAGCTTCCTTGTTCTTCTTCTAGTGCTCGCTTTGGTAGCTTCTTCTGCTACGGCAGGGCATCATCATTCACACCGAAGTCTCCGGCGCCGCACCTTCTCCGGCCGTTGTCGAAGCTCCGTCGGTTCCGCCGTCTTCGATTTCCGGAACTCCTGTTGAGGCGCCTGCACCGGCAGCAAGCGGCGCTGGCTTTGTTTCTGGATCAATGGCTGTTAGTGTTGGAATCTTTGCTGCTGCATTGTTCGTTTAG

mRNA sequence

ATGGCTTCAAGAAGCTTCCTTGTTCTTCTTCTAGTGCTCGCTTTGGTAGCTTCTTCTGCTACGGCAGGGCATCATCATTCACACCGAACTCCGTCGGTTCCGCCGTCTTCGATTTCCGGAACTCCTGTTGAGGCGCCTGCACCGGCAGCAAGCGGCGCTGGCTTTGTTTCTGGATCAATGGCTGTTAGTGTTGGAATCTTTGCTGCTGCATTGTTCGTTTAG

Coding sequence (CDS)

ATGGCTTCAAGAAGCTTCCTTGTTCTTCTTCTAGTGCTCGCTTTGGTAGCTTCTTCTGCTACGGCAGGGCATCATCATTCACACCGAACTCCGTCGGTTCCGCCGTCTTCGATTTCCGGAACTCCTGTTGAGGCGCCTGCACCGGCAGCAAGCGGCGCTGGCTTTGTTTCTGGATCAATGGCTGTTAGTGTTGGAATCTTTGCTGCTGCATTGTTCGTTTAG

Protein sequence

MASRSFLVLLLVLALVASSATAGHHHSHRTPSVPPSSISGTPVEAPAPAASGAGFVSGSMAVSVGIFAAALFV

Homology

[Close]

BLAST of IVF0000568 vs. ExPASy TrEMBL
Match: A0A0A0K427 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-20
Identity = 69/87 (79.31%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSH-------------RTPSVPPSSISGTPVEAPA 60
          MASRSFLVLLLVLALVASSATAGHHHSH               PSVPPSSISGTPVEAPA
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 61 PAASGAGFVSGSMAVSVGI-FAAALFV 74
          PAA+GAG VSGSMAVSVGI FAAALFV
Sbjct: 61 PAANGAGLVSGSMAVSVGIFFAAALFV 87

[Close]

BLAST of IVF0000568 vs. ExPASy TrEMBL
Match: A0A6J1GLJ6 (STE20/SPS1-related proline-alanine-rich protein kinase-like OS=Cucurbita moschata OX=3662 GN=LOC111455452 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.8e-10
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSH-RTPSVPPSSI--------SGTPVEAPAPAAS 60
          MASRSFLV LL++ALVAS A AGHHH+H ++P+  PS +        + +PV APAPA S
Sbjct: 1  MASRSFLVALLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPSPVSAPAPAES 60

Query: 61 GAGFV----SGSMAVSVGIFAAALF 73
          GAG +    +GSMAV VGIFAAALF
Sbjct: 61 GAGVIGTGFAGSMAVGVGIFAAALF 85

[Close]

BLAST of IVF0000568 vs. NCBI nr
Match: KGN43805.2 (hypothetical protein Csa_017194, partial [Cucumis sativus])

HSP 1 Score: 107 bits (266), Expect = 3.15e-27
Identity = 69/87 (79.31%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MASRSFLVLLLVLALVASSATAGHHHSH-------------RTPSVPPSSISGTPVEAPA 60
           MASRSFLVLLLVLALVASSATAGHHHSH               PSVPPSSISGTPVEAPA
Sbjct: 90  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 149

Query: 61  PAASGAGFVSGSMAVSVGIF-AAALFV 73
           PAA+GAG VSGSMAVSVGIF AAALFV
Sbjct: 150 PAANGAGLVSGSMAVSVGIFFAAALFV 176

[Close]

BLAST of IVF0000568 vs. NCBI nr
Match: XP_023554722.1 (uncharacterized protein LOC111811901 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 4.38e-15
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSH-RTPSVPPSSI--------SGTPVEAPAPAAS 60
          MASRSFLV+LL++ALVAS A AGHHH+H ++P+  PS +        + +PV APAPA S
Sbjct: 1  MASRSFLVVLLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEAPLAPAPSPVSAPAPAES 60

Query: 61 GAGFV----SGSMAVSVGIFAAALF 72
          GAG +    +GSMAV VGIFAAALF
Sbjct: 61 GAGVIGTGFAGSMAVGVGIFAAALF 85

[Close]

BLAST of IVF0000568 vs. NCBI nr
Match: KAG6571852.1 (hypothetical protein SDJN03_28580, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 4.38e-15
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSH-RTPSVPPSSI--------SGTPVEAPAPAAS 60
          MASRSFLV+LL++ALVAS A AGHHH+H ++P+  PS +        + +PV APAPA S
Sbjct: 1  MASRSFLVVLLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPSPVSAPAPAES 60

Query: 61 GAGFV----SGSMAVSVGIFAAALF 72
          GAG +    +GSMAV VGIFAAALF
Sbjct: 61 GAGVIGTGFAGSMAVGVGIFAAALF 85

[Close]

BLAST of IVF0000568 vs. NCBI nr
Match: XP_022952911.1 (STE20/SPS1-related proline-alanine-rich protein kinase-like [Cucurbita moschata])

HSP 1 Score: 72.8 bits (177), Expect = 8.82e-15
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSH-RTPSVPPSSI--------SGTPVEAPAPAAS 60
          MASRSFLV LL++ALVAS A AGHHH+H ++P+  PS +        + +PV APAPA S
Sbjct: 1  MASRSFLVALLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPSPVSAPAPAES 60

Query: 61 GAGFV----SGSMAVSVGIFAAALF 72
          GAG +    +GSMAV VGIFAAALF
Sbjct: 61 GAGVIGTGFAGSMAVGVGIFAAALF 85

The following BLAST results are available for this feature:

BLAST of IVF0000568 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000568 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K427	4.2e-20	79.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1	[more]
A0A6J1GLJ6	8.8e-10	58.82	STE20/SPS1-related proline-alanine-rich protein kinase-like OS=Cucurbita moschat...	[more]

BLAST of IVF0000568 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43805.2	3.15e-27	79.31	hypothetical protein Csa_017194, partial [Cucumis sativus]	[more]
XP_023554722.1	4.38e-15	58.82	uncharacterized protein LOC111811901 [Cucurbita pepo subsp. pepo]	[more]
KAG6571852.1	4.38e-15	58.82	hypothetical protein SDJN03_28580, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022952911.1	8.82e-15	58.82	STE20/SPS1-related proline-alanine-rich protein kinase-like [Cucurbita moschata]	[more]

BLAST of IVF0000568 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000568.1	IVF0000568.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding