IVF0000277 (gene) Melon (IVF77) v1

Overview
NameIVF0000277
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSerine-rich protein-related, putative
Locationchr01: 10404722 .. 10405569 (+)
RNA-Seq ExpressionIVF0000277
SyntenyIVF0000277
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATCGAGGAGTTCACTACCAATGTCAAAATTTGCTTACATTTCTCAAACATTTCCTTTCTCCCATATCAACAATATTTTTCCCTTCAAACCACAAAAACCCACACCAACAATCCCCAAATTTCACAAACCCTAACTATTCCATCTTTCTTCTAACTAAAATCTGATTCAATCCCCCATGGATAACAAAGCAGATCGCAAAGCTCCTAGGCCCAACGATAGAAACATTCCCAATCACAATCTCAATCACAATCACAATCACCATCACAATCACCATCACAATCACCATCACTATCACAGAATGGCAATCACAGAGTTGAATTTAGCAGATCTTAAGCACAATAATCATCACCTCCTCGTCTCTCCCTCGCCACCCTCCACCGCCACCAAGACTCCCTCCTCTGCTAAAGCCAACTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATGCTGGAATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAACCTACCGAAATAATGGGACCTTTTTCGCCTTGACTTGCCTTTTTCCTTCTTTTCTGGAGGCGGCTTTGTTTTGTTTATTTGTTCCTTTGTGTTCCTGCTTCCTCTTCCAGTTGGTGATGCAAAAATGTGGGGAATGAATGGAGGATTTCGTTATTGATTTATTGATTTATTTTTGTGTTAGACATGGGGGATTTGCTTGTGTTTAATAATTAGCTTTGCTTCCATGCTCCTTACCCACTTATTTTACATCTTCAATGGAATATTTTATTTTTATGCTAACGTTATTTTATATTTATAGATATGTATTCAAATAGACCTC

mRNA sequence

AAAATCGAGGAGTTCACTACCAATGTCAAAATTTGCTTACATTTCTCAAACATTTCCTTTCTCCCATATCAACAATATTTTTCCCTTCAAACCACAAAAACCCACACCAACAATCCCCAAATTTCACAAACCCTAACTATTCCATCTTTCTTCTAACTAAAATCTGATTCAATCCCCCATGGATAACAAAGCAGATCGCAAAGCTCCTAGGCCCAACGATAGAAACATTCCCAATCACAATCTCAATCACAATCACAATCACCATCACAATCACCATCACAATCACCATCACTATCACAGAATGGCAATCACAGAGTTGAATTTAGCAGATCTTAAGCACAATAATCATCACCTCCTCGTCTCTCCCTCGCCACCCTCCACCGCCACCAAGACTCCCTCCTCTGCTAAAGCCAACTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATGCTGGAATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAACCTACCGAAATAATGGGACCTTTTTCGCCTTGACTTGCCTTTTTCCTTCTTTTCTGGAGGCGGCTTTGTTTTGTTTATTTGTTCCTTTGTGTTCCTGCTTCCTCTTCCAGTTGGTGATGCAAAAATGTGGGGAATGAATGGAGGATTTCGTTATTGATTTATTGATTTATTTTTGTGTTAGACATGGGGGATTTGCTTGTGTTTAATAATTAGCTTTGCTTCCATGCTCCTTACCCACTTATTTTACATCTTCAATGGAATATTTTATTTTTATGCTAACGTTATTTTATATTTATAGATATGTATTCAAATAGACCTC

Coding sequence (CDS)

ATGGATAACAAAGCAGATCGCAAAGCTCCTAGGCCCAACGATAGAAACATTCCCAATCACAATCTCAATCACAATCACAATCACCATCACAATCACCATCACAATCACCATCACTATCACAGAATGGCAATCACAGAGTTGAATTTAGCAGATCTTAAGCACAATAATCATCACCTCCTCGTCTCTCCCTCGCCACCCTCCACCGCCACCAAGACTCCCTCCTCTGCTAAAGCCAACTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATGCTGGAATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAACCTACCGAAATAATGGGACCTTTTTCGCCTTGA

Protein sequence

MDNKADRKAPRPNDRNIPNHNLNHNHNHHHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPFSP
Homology
BLAST of IVF0000277 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.8e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 42  MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM 101
           MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM
Sbjct: 1   MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM 60

Query: 102 IRGGSVGSNLSDLARKPTEIMGPFSP 128
           IRGGSVGSNLSDLARKPTEIMGPFSP
Sbjct: 61  IRGGSVGSNLSDLARKPTEIMGPFSP 86

BLAST of IVF0000277 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.5e-41
Identity = 95/128 (74.22%), Postives = 107/128 (83.59%), Query Frame = 0

Query: 1   MDNKADRKAPRPNDRNIPNHNLNHNHNHHHNHHHNHHHYHRMAITELNLADLKHNNHHLL 60
           MDNKAD +APRPNDRN          NH++NH+HNHHH+H+MA T+LNL DLK  N  +L
Sbjct: 1   MDNKADHRAPRPNDRN----------NHNNNHNHNHHHHHKMAFTDLNLEDLK-QNPRIL 60

Query: 61  VSPSPPST-ATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPT 120
           VSPSPPS+ A +TPSSAKANCLCSPTTHIGSFRCRHHRH+GMIRGGSVGSNLSDL RKPT
Sbjct: 61  VSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPT 117

Query: 121 EIMGPFSP 128
           EI+G FSP
Sbjct: 121 EIVGSFSP 117

BLAST of IVF0000277 vs. ExPASy TrEMBL
Match: A0A7J6EXD7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-18
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 40  HRMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHA 99
           +++ + E+NL D K + H L+VSP   + +    SS ++NCLCSPTTH+GSFRCRHHR  
Sbjct: 19  YKLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHRSL 78

Query: 100 GMIRGGSVGSNLSDLARKPTEI 122
           GM+RGGSVGSNL+DL RK + I
Sbjct: 79  GMLRGGSVGSNLADLGRKSSSI 100

BLAST of IVF0000277 vs. ExPASy TrEMBL
Match: A0A7J6H8T3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-18
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 40  HRMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHA 99
           +++ + E+NL D K + H L+VSP   + +    SS ++NCLCSPTTH+GSFRCRHHR  
Sbjct: 34  YKLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHRSL 93

Query: 100 GMIRGGSVGSNLSDLARKPTEI 122
           GM+RGGSVGSNL+DL RK + I
Sbjct: 94  GMLRGGSVGSNLADLGRKSSSI 115

BLAST of IVF0000277 vs. ExPASy TrEMBL
Match: A0A6J1CNY2 (uncharacterized protein LOC111013367 OS=Momordica charantia OX=3673 GN=LOC111013367 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 41  RMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 100
           + A+ EL+L +LK ++H+L++SP+  S  +K+PS+ K+NCLCSPTTHIGSFRCR HR   
Sbjct: 21  KSALPELDLDELKKSSHNLVMSPTALSRMSKSPST-KSNCLCSPTTHIGSFRCRRHRSTA 80

Query: 101 MIRGGSVGSNLSDLARK 118
           + RGGSVGSNLSDLA+K
Sbjct: 81  ISRGGSVGSNLSDLAQK 96

BLAST of IVF0000277 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (458), Expect = 1.19e-56
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 42  MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM 101
           MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM
Sbjct: 1   MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM 60

Query: 102 IRGGSVGSNLSDLARKPTEIMGPFSP 127
           IRGGSVGSNLSDLARKPTEIMGPFSP
Sbjct: 61  IRGGSVGSNLSDLARKPTEIMGPFSP 86

BLAST of IVF0000277 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus])

HSP 1 Score: 178 bits (452), Expect = 2.56e-55
Identity = 97/128 (75.78%), Postives = 106/128 (82.81%), Query Frame = 0

Query: 1   MDNKADRKAPRPNDRNIPNHNLNHNHNHHHNHHHNHHHYHRMAITELNLADLKHNNHHLL 60
           MDNKAD +APRPNDRN  NHN NHNHNHHH        +H+MA T+LNL DLK N   +L
Sbjct: 1   MDNKADHRAPRPNDRN--NHNNNHNHNHHH--------HHKMAFTDLNLEDLKQNPR-IL 60

Query: 61  VSPSPPST-ATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPT 120
           VSPSPPS+ A +TPSSAKANCLCSPTTHIGSFRCRHHRH+GMIRGGSVGSNLSDL RKPT
Sbjct: 61  VSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPT 117

Query: 121 EIMGPFSP 127
           EI+G FSP
Sbjct: 121 EIVGSFSP 117

BLAST of IVF0000277 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125 bits (313), Expect = 2.80e-34
Identity = 69/127 (54.33%), Postives = 82/127 (64.57%), Query Frame = 0

Query: 1   MDNKADRKAPRPNDRNIPNHNLNHNHNHHHNHHHNHHHYHRMAITELNLADLKHNNHHLL 60
           MD+K D +APRP DRN PNH                  +H+   T+ +L D K   + L 
Sbjct: 1   MDHKPDHRAPRPIDRNNPNH------------------HHKTQFTDFDLEDFKQGTNLLA 60

Query: 61  VSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTE 120
            SPS  S A K PSSAKA+CLCSPTTHIGSFRCRHHRH GM+RG SVGSNLS+LA K T+
Sbjct: 61  SSPSR-SLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTD 108

Query: 121 IMGPFSP 127
           +M  +SP
Sbjct: 121 LMTSYSP 108

BLAST of IVF0000277 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (258), Expect = 6.13e-26
Identity = 65/124 (52.42%), Postives = 81/124 (65.32%), Query Frame = 0

Query: 1   MDNKADRKAPRPNDRNIPNHNLNHNHNHHHNHHHNHHHYHRMAITELNLADLKHNNHHLL 60
           MD+K D +APRP  R    H+L+H         HN     ++  T+ +L DLK +   +L
Sbjct: 1   MDHKPDHRAPRPTHR----HSLDH---------HN-----KIGFTDFDLEDLKRSPR-VL 60

Query: 61  VSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRH-AGMIRGGSVGSNLSDLARKPT 120
           VSPS  S+  K   +AK +CLCSPTTHIGSFRCRHHR  AG++RGGSVGSNLSDL RK +
Sbjct: 61  VSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSS 105

Query: 121 EIMG 123
           E MG
Sbjct: 121 EFMG 105

BLAST of IVF0000277 vs. NCBI nr
Match: KAF4362350.1 (hypothetical protein F8388_008234 [Cannabis sativa])

HSP 1 Score: 102 bits (253), Expect = 3.05e-25
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 41  RMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 100
           ++ + E+NL D K + H L+VSP   + +    SS ++NCLCSPTTH+GSFRCRHHR  G
Sbjct: 20  KLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHRSLG 79

Query: 101 MIRGGSVGSNLSDLARKPTEI 121
           M+RGGSVGSNL+DL RK + I
Sbjct: 80  MLRGGSVGSNLADLGRKSSSI 100

BLAST of IVF0000277 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 60.8 bits (146), Expect = 8.9e-10
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 62  SPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDL 115
           SPS     + +  S + NCLCSPTTH GSFRCR+HR   + R GS+GSNL+ L
Sbjct: 46  SPSLKRWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

BLAST of IVF0000277 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 57.4 bits (137), Expect = 9.8e-09
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 67  STATKTPSSAKANCLCSPTTHIGSFRCRHHRH---AGMIRGGSVGSNLSDLA 116
           S      SS + NCLC+PTTH GSFRCR+HR     GM RG SV SNLS LA
Sbjct: 52  SVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TYF36.8e-42100.00Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0K3W37.5e-4174.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1[more]
A0A7J6EXD75.2e-1856.10Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1[more]
A0A7J6H8T35.2e-1856.10Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1[more]
A0A6J1CNY21.7e-1661.04uncharacterized protein LOC111013367 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
Match NameE-valueIdentityDescription
KAA0048240.11.19e-56100.00putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D... [more]
KGN44385.12.56e-5575.78hypothetical protein Csa_015645 [Cucumis sativus][more]
KAG7024984.12.80e-3454.33hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607735.16.13e-2652.42hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF4362350.13.05e-2556.79hypothetical protein F8388_008234 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT5G55980.18.9e-1054.72serine-rich protein-related [more]
AT3G13227.19.8e-0959.62serine-rich protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR33132:SF73SERINE-RICH PROTEIN-LIKE PROTEINcoord: 62..114
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 62..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000277.2IVF0000277.2mRNA