HG10021792 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021792
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 16773862 .. 16774396 (-)
RNA-Seq ExpressionHG10021792
SyntenyHG10021792
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCTCATCAAAGTAGATAAGGAGCTGCTTGTCTGGGGGGAATACACATTAGAAGAAATAATTCAAATTGTAGACAAACGGAAAAAGCGCAAGAAGTCTCAGAAGAGTCAGCCAGAGCAAGTCATAGACAAGCTTCTCAAATGTCACGATTGGTACCAAATCTATAATGATCCGGTCTTAAGGAAGCTTGTCGTGCAGCCCTATGAGAGCATTCAGAATCTATACGAGGATCCGCAGGTAGTTCGAGATATGCAAACCACTTTGGGAGAGATATTTCTATATTCTTTTTTGAGCTAGTTGTTTTGAGGAGTAATGGATCATCTAGTGGTAACCAGTCTTCACAACACTTTATATAGGCGCATTCCCTTCCTTGCACTACTTGTAAGGTAAGAAGTTCTTGGATTCTCCTCTTTTTGAGGGTATCTTCTCTTTCTTATCTCAGATGTATGGAAATGAGCCCTCTGGTAGCCCTGTCCCTGTTCTTGTACTTGCATATGCCTATTCTTCTCAAATTCTCCTTGGTCTTCGCTAA

mRNA sequence

ATGTATCTCATCAAAGTAGATAAGGAGCTGCTTGTCTGGGGGGAATACACATTAGAAGAAATAATTCAAATTGTAGACAAACGGAAAAAGCGCAAGAAGTCTCAGAAGAGTCAGCCAGAGCAAGTCATAGACAAGCTTCTCAAATGTCACGATTGGTACCAAATCTATAATGATCCGGTCTTAAGGAAGCTTGTCGTGCAGCCCTATGAGAGCATTCAGAATCTATACGAGGATCCGCAGATGTATGGAAATGAGCCCTCTGGTAGCCCTGTCCCTGTTCTTGTACTTGCATATGCCTATTCTTCTCAAATTCTCCTTGGTCTTCGCTAA

Coding sequence (CDS)

ATGTATCTCATCAAAGTAGATAAGGAGCTGCTTGTCTGGGGGGAATACACATTAGAAGAAATAATTCAAATTGTAGACAAACGGAAAAAGCGCAAGAAGTCTCAGAAGAGTCAGCCAGAGCAAGTCATAGACAAGCTTCTCAAATGTCACGATTGGTACCAAATCTATAATGATCCGGTCTTAAGGAAGCTTGTCGTGCAGCCCTATGAGAGCATTCAGAATCTATACGAGGATCCGCAGATGTATGGAAATGAGCCCTCTGGTAGCCCTGTCCCTGTTCTTGTACTTGCATATGCCTATTCTTCTCAAATTCTCCTTGGTCTTCGCTAA

Protein sequence

MYLIKVDKELLVWGEYTLEEIIQIVDKRKKRKKSQKSQPEQVIDKLLKCHDWYQIYNDPVLRKLVVQPYESIQNLYEDPQMYGNEPSGSPVPVLVLAYAYSSQILLGLR
Homology
BLAST of HG10021792 vs. NCBI nr
Match: KAF3452224.1 (hypothetical protein FNV43_RR08322 [Rhamnella rubrinervis])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 2   YLIKVDKELLVWGEYTLEEIIQIV----DKRKKRKKS---------QKSQPEQVIDKLLK 61
           YL+K D + LVWGEY+LEEI+ I      K KK   S         + + PE +I+KL +
Sbjct: 108 YLLKEDTQPLVWGEYSLEEILAIAAGASQKNKKATTSTPAEQLQIMEATPPEIIIEKLER 167

Query: 62  CHDWYQIYNDPVLRKLVVQPYESIQNLYED 79
           C+ WY+IYNDP+LRKL V  Y+S++NLY+D
Sbjct: 168 CNHWYEIYNDPILRKLSVHSYQSLRNLYDD 197

BLAST of HG10021792 vs. NCBI nr
Match: TXG46227.1 (hypothetical protein EZV62_028258 [Acer yangbiense])

HSP 1 Score: 57.4 bits (137), Expect = 9.0e-05
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 0

Query: 2   YLIKVDKELLVWGEYTLEEIIQIVDKRKKRKKSQKSQPEQVIDKLLKCHDWYQIYNDPVL 61
           YL K DK  LVWGEYT E+I+ I +  +  KK      + V+D L KC DW+ IY++ VL
Sbjct: 120 YLTKEDKSPLVWGEYTREQILDISECSRHHKKDTTVPNQVVLDNLSKCEDWFDIYSNEVL 179

Query: 62  RKLVVQPY 70
              + + Y
Sbjct: 180 VNRLFRSY 187

BLAST of HG10021792 vs. NCBI nr
Match: EEF27325.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 54.3 bits (129), Expect = 7.6e-04
Identity = 26/77 (33.77%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 2   YLIKVDKELLVWGEYTLEEIIQIVDKRKKRKKSQKSQPEQVIDKLLKCHDWYQIYNDPVL 61
           Y+ K DK  +VWGEY+L++I++I    + R  +  +        L KC+DWY++Y    L
Sbjct: 69  YVTKEDKNPVVWGEYSLDQIMEIAAPVRSRINTLPT-------GLYKCNDWYEVYEQDSL 128

Query: 62  RKLVVQPYESIQNLYED 79
           +  +++ Y +I+N++ED
Sbjct: 129 KDRLMRGYNNIRNVFED 138

BLAST of HG10021792 vs. ExPASy TrEMBL
Match: A0A5C7GNV1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027796 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-05
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 0

Query: 2   YLIKVDKELLVWGEYTLEEIIQIVDKRKKRKKSQKSQPEQVIDKLLKCHDWYQIYNDPVL 61
           YL K DK  LVWGEYT E+I+ I +  +  KK      + V+D L KC DW+ IY++ VL
Sbjct: 120 YLTKEDKSPLVWGEYTREQILDISECSRHHKKDTTVPNQVVLDNLSKCEDWFDIYSNEVL 179

Query: 62  RKLVVQPY 70
              + + Y
Sbjct: 180 VNRLFRSY 187

BLAST of HG10021792 vs. ExPASy TrEMBL
Match: B9T9Z5 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2118790 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-04
Identity = 26/77 (33.77%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 2   YLIKVDKELLVWGEYTLEEIIQIVDKRKKRKKSQKSQPEQVIDKLLKCHDWYQIYNDPVL 61
           Y+ K DK  +VWGEY+L++I++I    + R  +  +        L KC+DWY++Y    L
Sbjct: 69  YVTKEDKNPVVWGEYSLDQIMEIAAPVRSRINTLPT-------GLYKCNDWYEVYEQDSL 128

Query: 62  RKLVVQPYESIQNLYED 79
           +  +++ Y +I+N++ED
Sbjct: 129 KDRLMRGYNNIRNVFED 138

BLAST of HG10021792 vs. ExPASy TrEMBL
Match: A0A5A7SZR2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43296G00060 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04
Identity = 31/101 (30.69%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 2   YLIKVDKELLVWGEYTLEEIIQIVDKRKKRKKSQKSQPE-------QVIDKLLKCHDWYQ 61
           Y+ K DK   VWG++T+ +++      +  K ++K  PE       ++  KL +C+D+  
Sbjct: 73  YITKQDKAPYVWGKFTINQVLAEAKAARDHKSTRKITPETGEDKNQRIYAKLRQCNDFLA 132

Query: 62  IYNDPVLRKLVVQPYESIQNLYEDPQMYGNEPSGSPVPVLV 96
           +  DP L  L++  Y++I+NL+ED Q    +   SP+ +LV
Sbjct: 133 LRKDPELADLLLLKYQTIRNLWEDEQSIKAQLE-SPMGILV 172

BLAST of HG10021792 vs. ExPASy TrEMBL
Match: A0A5D3BSH0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83326G00020 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04
Identity = 31/101 (30.69%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 2   YLIKVDKELLVWGEYTLEEIIQIVDKRKKRKKSQKSQPE-------QVIDKLLKCHDWYQ 61
           Y+ K DK   VWG++T+ +++      +  K ++K  PE       ++  KL +C+D+  
Sbjct: 249 YITKQDKAPYVWGKFTINQVLAEAKAARDHKSTRKITPETGEDKNQRIYAKLRQCNDFLA 308

Query: 62  IYNDPVLRKLVVQPYESIQNLYEDPQMYGNEPSGSPVPVLV 96
           +  DP L  L++  Y++I+NL+ED Q    +   SP+ +LV
Sbjct: 309 LRKDPELADLLLLKYQTIRNLWEDEQSIKAQLE-SPMGILV 348

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF3452224.13.4e-1247.78hypothetical protein FNV43_RR08322 [Rhamnella rubrinervis][more]
TXG46227.19.0e-0542.65hypothetical protein EZV62_028258 [Acer yangbiense][more]
EEF27325.17.6e-0433.77conserved hypothetical protein [Ricinus communis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5C7GNV14.4e-0542.65Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027796 PE=4 SV=1[more]
B9T9Z53.7e-0433.77Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2118790 PE=4 SV=1[more]
A0A5A7SZR28.2e-0430.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BSH08.2e-0430.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021792.1HG10021792.1mRNA