HG10021708 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021708
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr05: 14468998 .. 14470575 (-)
RNA-Seq Expression	HG10021708
Synteny	HG10021708

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGCATTCCTTCGCACATCGCCATTCCATCCCAACACCAACAATGTCCTAATCCGCCATCTTCAATTCCACTTTCAAACCCAACAAAACTCAACTTCCCCCGCTCTCCCAATTCCTCACATCGCAATATCTCTTCCAAATTCACCGCCAATTCTATTGACCCCATTGTTCTATGGACTTCTTCTCTTGCTCGCTACTGCCGCAACGGCCAGTTATCCGAAGCCGCCGCAGAGTTTACGCGCATGAGACTCGCCGGAGTTGAGCCGAACCACGTCACATTCATTACACTTCTCTCCGGCTGTGCTGATTTTCCGTCAGAAAGCCTCTTCTTCGGCTCTTTGCTTCATGGTTACGCCCGTAAATTTGGTTTGGATACAGGGCATGTAATGGTGGGGACTGCTTTGATTGATATGTATGCCAAATGTGCTCAATTGGGTCTTGCTAGGAAGGTTTTTGATTACTTAGGCGTGAAAAACTCTGTCTCTTGGAACACGATGCTCGATGGTTACACGAGGAATGGAGAGATTGAGTTGGCACTTGACCTGTTTGATGAAATGCCTACAAGAGATGCAATTTCTTGGACGGCTTTGATTAACGGTCTTTTCAAACATGGGTACTCTGAACAAGCATTGGAGTGCTTCCATCAGATGCAATGCTCGGGTATAGAGCCTGATTATGTGTCTATAATTGCTGTTCTCGCTGCGTGTGCTGATTTGGGCGCGCTTACTTTGGGGTTGTGGGTTAATCGGTTTGTTATGCAGCAGGAGTTTAAGGATAATATAAGGATAAGTAATTCCTTGATAGATATGTATTCTCGATGTGGATGTATTGAGTTTGCACGCCAAGTGTTTGAGAAAATGCCCAAGCGAACTTTGGTATCTTGGAACTCTATCATTGTGGGGTTTGCAGTTAATGGGTTTGCAGATGAATCTCTGGAGTTTTTTGATGCGATGCAGAAGGAGGGATTCAAGCCAGATGGAGTTAGCTACACGGGAGCTCTTACTGCATGTACCCATGCTGGCTTAGTGAACAAGGGCTTGGAATTGTTTGATAACATGAAGAGCGTACACAGAATTACTCCCAGGATTGAGCATTATGGATGTATTGTCGACCTCTATGGTCGTGCAGGGAGGTTAGACGATGCATTGAATGTGATTGAGGAAATGCCGATGAAACCGAATGAAGTCGTGTTGGGGTCGTTGCTGGCTGCCTGCAGGACTCATGGTGATGTGAGCCTGGCTGAAAGGTTAATGAAACATCTCTTTAAGTTAGATCCAGGAGGCGATTCAAATTATGTGCTTCTTTCAAACATATATGCAGCAATTGGGAAGTGGGAAGGAGCTAACAAGGTCAGGAGAACGATGAAAGCCCGAGGCGTGCAGAAAAAACCGGGTTGTAGTTCTGTTGAGATTGATGGTAAGGTTCATGAGTTTGTTTCTGGTGACAAATACCATGCTGATGCAGACAGTATTTACTCAATGTTAGAGCTGTTGTTTCATGAATTAAAGATATGTGGCTATGTTCCTGATACCGACACCATTCTGAATACCAAAGAATCTAGTAAAGACCATTGA

mRNA sequence

ATGAGCAGCATTCCTTCGCACATCGCCATTCCATCCCAACACCAACAATGTCCTAATCCGCCATCTTCAATTCCACTTTCAAACCCAACAAAACTCAACTTCCCCCGCTCTCCCAATTCCTCACATCGCAATATCTCTTCCAAATTCACCGCCAATTCTATTGACCCCATTGTTCTATGGACTTCTTCTCTTGCTCGCTACTGCCGCAACGGCCAGTTATCCGAAGCCGCCGCAGAGTTTACGCGCATGAGACTCGCCGGAGTTGAGCCGAACCACGTCACATTCATTACACTTCTCTCCGGCTGTGCTGATTTTCCGTCAGAAAGCCTCTTCTTCGGCTCTTTGCTTCATGGTTACGCCCGTAAATTTGGTTTGGATACAGGGCATGTAATGGTGGGGACTGCTTTGATTGATATGTATGCCAAATGTGCTCAATTGGGTCTTGCTAGGAAGGTTTTTGATTACTTAGGCGTGAAAAACTCTGTCTCTTGGAACACGATGCTCGATGGTTACACGAGGAATGGAGAGATTGAGTTGGCACTTGACCTGTTTGATGAAATGCCTACAAGAGATGCAATTTCTTGGACGGCTTTGATTAACGGTCTTTTCAAACATGGGTACTCTGAACAAGCATTGGAGTGCTTCCATCAGATGCAATGCTCGGGTATAGAGCCTGATTATGTGTCTATAATTGCTGTTCTCGCTGCGTGTGCTGATTTGGGCGCGCTTACTTTGGGGTTGTGGGTTAATCGGTTTGTTATGCAGCAGGAGTTTAAGGATAATATAAGGATAAGTAATTCCTTGATAGATATGTATTCTCGATGTGGATGTATTGAGTTTGCACGCCAAGTGTTTGAGAAAATGCCCAAGCGAACTTTGGTATCTTGGAACTCTATCATTGTGGGGTTTGCAGTTAATGGGTTTGCAGATGAATCTCTGGAGTTTTTTGATGCGATGCAGAAGGAGGGATTCAAGCCAGATGGAGTTAGCTACACGGGAGCTCTTACTGCATGTACCCATGCTGGCTTAGTGAACAAGGGCTTGGAATTGTTTGATAACATGAAGAGCGTACACAGAATTACTCCCAGGATTGAGCATTATGGATGTATTGTCGACCTCTATGGTCGTGCAGGGAGGTTAGACGATGCATTGAATGTGATTGAGGAAATGCCGATGAAACCGAATGAAGTCGTGTTGGGGTCGTTGCTGGCTGCCTGCAGGACTCATGGTGATGTGAGCCTGGCTGAAAGGTTAATGAAACATCTCTTTAAGTTAGATCCAGGAGGCGATTCAAATTATGTGCTTCTTTCAAACATATATGCAGCAATTGGGAAGTGGGAAGGAGCTAACAAGGTCAGGAGAACGATGAAAGCCCGAGGCGTGCAGAAAAAACCGGGTTGTAGTTCTGTTGAGATTGATGGTAAGGTTCATGAGTTTGTTTCTGGTGACAAATACCATGCTGATGCAGACAGTATTTACTCAATGTTAGAGCTGTTGTTTCATGAATTAAAGATATGTGGCTATGTTCCTGATACCGACACCATTCTGAATACCAAAGAATCTAGTAAAGACCATTGA

Coding sequence (CDS)

ATGAGCAGCATTCCTTCGCACATCGCCATTCCATCCCAACACCAACAATGTCCTAATCCGCCATCTTCAATTCCACTTTCAAACCCAACAAAACTCAACTTCCCCCGCTCTCCCAATTCCTCACATCGCAATATCTCTTCCAAATTCACCGCCAATTCTATTGACCCCATTGTTCTATGGACTTCTTCTCTTGCTCGCTACTGCCGCAACGGCCAGTTATCCGAAGCCGCCGCAGAGTTTACGCGCATGAGACTCGCCGGAGTTGAGCCGAACCACGTCACATTCATTACACTTCTCTCCGGCTGTGCTGATTTTCCGTCAGAAAGCCTCTTCTTCGGCTCTTTGCTTCATGGTTACGCCCGTAAATTTGGTTTGGATACAGGGCATGTAATGGTGGGGACTGCTTTGATTGATATGTATGCCAAATGTGCTCAATTGGGTCTTGCTAGGAAGGTTTTTGATTACTTAGGCGTGAAAAACTCTGTCTCTTGGAACACGATGCTCGATGGTTACACGAGGAATGGAGAGATTGAGTTGGCACTTGACCTGTTTGATGAAATGCCTACAAGAGATGCAATTTCTTGGACGGCTTTGATTAACGGTCTTTTCAAACATGGGTACTCTGAACAAGCATTGGAGTGCTTCCATCAGATGCAATGCTCGGGTATAGAGCCTGATTATGTGTCTATAATTGCTGTTCTCGCTGCGTGTGCTGATTTGGGCGCGCTTACTTTGGGGTTGTGGGTTAATCGGTTTGTTATGCAGCAGGAGTTTAAGGATAATATAAGGATAAGTAATTCCTTGATAGATATGTATTCTCGATGTGGATGTATTGAGTTTGCACGCCAAGTGTTTGAGAAAATGCCCAAGCGAACTTTGGTATCTTGGAACTCTATCATTGTGGGGTTTGCAGTTAATGGGTTTGCAGATGAATCTCTGGAGTTTTTTGATGCGATGCAGAAGGAGGGATTCAAGCCAGATGGAGTTAGCTACACGGGAGCTCTTACTGCATGTACCCATGCTGGCTTAGTGAACAAGGGCTTGGAATTGTTTGATAACATGAAGAGCGTACACAGAATTACTCCCAGGATTGAGCATTATGGATGTATTGTCGACCTCTATGGTCGTGCAGGGAGGTTAGACGATGCATTGAATGTGATTGAGGAAATGCCGATGAAACCGAATGAAGTCGTGTTGGGGTCGTTGCTGGCTGCCTGCAGGACTCATGGTGATGTGAGCCTGGCTGAAAGGTTAATGAAACATCTCTTTAAGTTAGATCCAGGAGGCGATTCAAATTATGTGCTTCTTTCAAACATATATGCAGCAATTGGGAAGTGGGAAGGAGCTAACAAGGTCAGGAGAACGATGAAAGCCCGAGGCGTGCAGAAAAAACCGGGTTGTAGTTCTGTTGAGATTGATGGTAAGGTTCATGAGTTTGTTTCTGGTGACAAATACCATGCTGATGCAGACAGTATTTACTCAATGTTAGAGCTGTTGTTTCATGAATTAAAGATATGTGGCTATGTTCCTGATACCGACACCATTCTGAATACCAAAGAATCTAGTAAAGACCATTGA

Protein sequence

MSSIPSHIAIPSQHQQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKDH

Homology

[Close]

BLAST of HG10021708 vs. NCBI nr
Match: XP_038877228.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Benincasa hispida])

HSP 1 Score: 1003.4 bits (2593), Expect = 7.1e-289
Identity = 488/525 (92.95%), Postives = 505/525 (96.19%), Query Frame = 0


Query: 1   MSSIPSHIAIPSQHQQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIVLW 60
           MSS PS+ AIPSQ QQ PNPPSSIPLSNPTKLNFPRSPNSSHRNISSKF ANSIDPIVLW
Sbjct: 1   MSSSPSYTAIPSQLQQYPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFPANSIDPIVLW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHGYA 120
           TSSLARYCRNGQLSEAA EFTRMRLAGVEPNHVTFITLLSGC DFPSESLFFGS LHGYA
Sbjct: 61  TSSLARYCRNGQLSEAATEFTRMRLAGVEPNHVTFITLLSGCTDFPSESLFFGSSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
           RK GLDTGHVMVGTAL+DMYAKCAQ  LARKVFDYLG+KNSV+WNTMLDGYTRNGEIELA
Sbjct: 121 RKLGLDTGHVMVGTALVDMYAKCAQSRLARKVFDYLGMKNSVTWNTMLDGYTRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           +DLFDEMPTRDAISWTALINGL K G+SEQALECFHQMQCSGIEPDYVSIIAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGFSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALTLGLWVNRFVMQQEFKDNIRISNSL+DMYSRCGCIEFARQVFEKMPKRTLVSWNSII
Sbjct: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLVDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVHRI 360
           VGFAVNGFADESLEFFDAMQ EGFKPDGVSYTGALTAC+HAGLVNKGLELFDNMK +H+I
Sbjct: 301 VGFAVNGFADESLEFFDAMQNEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRIHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420
           TPRIEHYGCIVDLYGRAGRL+DALNVIEEMPMKPNEVVLGSLLAACRT+GDVSLAE+LMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTYGDVSLAEKLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           HL KLDP GDSNYVLLSNIYAAIG+WEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV
Sbjct: 421 HLSKLDPRGDSNYVLLSNIYAAIGRWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480

Query: 481 SGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKDH 526
           +GDKYHADAD+IYSMLELLFHELKI GYVPDT+ ILNTKE SKDH
Sbjct: 481 AGDKYHADADNIYSMLELLFHELKIYGYVPDTNIILNTKEFSKDH 525

[Close]

BLAST of HG10021708 vs. NCBI nr
Match: XP_022142716.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Momordica charantia])

HSP 1 Score: 956.8 bits (2472), Expect = 7.6e-275
Identity = 466/525 (88.76%), Postives = 492/525 (93.71%), Query Frame = 0


Query: 1   MSSIPSHIAIPSQHQQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIVLW 60
           MSSIP++ A   Q QQ PNP +SIPL NP  +NFPRS NSS+R+ISSK T NSIDPIVLW
Sbjct: 1   MSSIPANTAAAVQLQQYPNPATSIPLPNPETINFPRSENSSNRHISSKSTGNSIDPIVLW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHGYA 120
           TSS+ARYCRNGQL+EAAAEFT MRLAGVEPNHVT ITLLSGCADFPSESL+FGS LHGYA
Sbjct: 61  TSSIARYCRNGQLAEAAAEFTSMRLAGVEPNHVTLITLLSGCADFPSESLYFGSSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
           RK GLDT HVMVGT+++DMYAKCAQLGLAR+VFDYL +KNSVSWNTMLDGYTRNGEIELA
Sbjct: 121 RKLGLDTAHVMVGTSIVDMYAKCAQLGLARRVFDYLRMKNSVSWNTMLDGYTRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           +DLFDEMPTRDAISWTALINGL K GYSEQALECFHQMQCSGI+PDYVSIIAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGYSEQALECFHQMQCSGIKPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           G LTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCI FARQVFE+M KRTLVSWNSII
Sbjct: 241 GTLTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIGFARQVFERMSKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVHRI 360
           VG+A NGFADESLEFFDAMQKEGFKPD VSYTGALTAC+HAGLVNKGLELFDNMK VHRI
Sbjct: 301 VGYAANGFADESLEFFDAMQKEGFKPDAVSYTGALTACSHAGLVNKGLELFDNMKRVHRI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420
            PRIEHYGCIVDLYGRAGRL+DAL+VIE+MPMKPNEVVLGSLLAACRTHGDVSLAERLMK
Sbjct: 361 IPRIEHYGCIVDLYGRAGRLEDALDVIEKMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           HL KLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPG SSVEIDGKVHEFV
Sbjct: 421 HLSKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480

Query: 481 SGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKDH 526
           +GDKYHADADSIYSML+LL HELKICG VP+T+T LNTKESSKDH
Sbjct: 481 AGDKYHADADSIYSMLQLLVHELKICGSVPETETFLNTKESSKDH 525

[Close]

BLAST of HG10021708 vs. NCBI nr
Match: XP_004139593.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucumis sativus])

HSP 1 Score: 950.3 bits (2455), Expect = 7.1e-273
Identity = 466/524 (88.93%), Postives = 489/524 (93.32%), Query Frame = 0


Query: 1   MSSIPSHIAIPSQHQQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIVLW 60
           MSSIPSH A PSQ Q  P  PSSIPLSNPTKLNFPRSPNS HRNISSKF  NS+DPIVLW
Sbjct: 1   MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHGYA 120
           TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNH+TFITLLS CADFPSES FF S LHGYA
Sbjct: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
            K+GLDTGHVMVGTALIDMY+KCAQLG ARKVF  LGVKNSVSWNTML+G+ RNGEIELA
Sbjct: 121 CKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           + LFDEMPTRDAISWTALINGL KHGYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALTLGLWV+RFVM QEFKDNI+ISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVHRI 360
           VGFAVNGFADESLEFF AMQKEGFKPDGVSYTGALTAC+HAGLVNKGLELFDNMKSVH+I
Sbjct: 301 VGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420
           TPRIEHYGCIVDLYGRAGRL+DALN+IEEMPMKPNEVVLGSLLAACRTHGDV+LAERLMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           HLFKLDP GD+ YVLLSNIYAAIGKW+GAN VRRTMKARGVQKKPG SSVEIDGKVHEFV
Sbjct: 421 HLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFV 480

Query: 481 SGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKD 525
           +GD YHADAD+IYSML+LL HELK+CGYVP +DTILNTKES+KD
Sbjct: 481 AGDNYHADADNIYSMLDLLCHELKVCGYVPGSDTILNTKESNKD 524

[Close]

BLAST of HG10021708 vs. NCBI nr
Match: XP_008458940.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucumis melo] >KAA0054376.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12413.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 943.0 bits (2436), Expect = 1.1e-270
Identity = 465/525 (88.57%), Postives = 488/525 (92.95%), Query Frame = 0


Query: 1   MSSIPSHIAIPSQHQQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIVLW 60
           MSSIPSHIA PSQ QQ P+  SSIPLSNPTK+NFPRSP S H NI SKFTANS+ PIV W
Sbjct: 1   MSSIPSHIASPSQLQQPPS--SSIPLSNPTKVNFPRSPKSPHCNIFSKFTANSVHPIVQW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHGYA 120
           TSS+ARYC NGQL EAAAEFTRMRLAGVEPNH+TFITLLSGCADFPSES FF S LHGYA
Sbjct: 61  TSSIARYCGNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSES-FFASSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
            KFGLDTGHVMVGTALIDMY+KC+QLGLA+KVFDYLGVKNSVSWNTML+G+ RNGEIELA
Sbjct: 121 CKFGLDTGHVMVGTALIDMYSKCSQLGLAKKVFDYLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           + LFDEMPTRDAISWTALINGL KHGYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVVADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALT GLWVNRFVMQQEFKDN+RISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTSGLWVNRFVMQQEFKDNVRISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVHRI 360
           VGFA NGFADESLEFF AMQKEGFKPDGVSYTGALTAC+HAGLVNKGLELFDNMK VH+I
Sbjct: 301 VGFAFNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420
           TP IEHYGCIVDLYGRAGRL+DA NVIEEMPMKPNEVVLGSLLAACRTHGDV LAERLMK
Sbjct: 361 TPGIEHYGCIVDLYGRAGRLEDASNVIEEMPMKPNEVVLGSLLAACRTHGDVRLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           H+FKLD  GDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKK G SSVEIDGKVHEFV
Sbjct: 421 HIFKLDSVGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKRGYSSVEIDGKVHEFV 480

Query: 481 SGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKDH 526
           +GDKYHADAD+IYSML+LLFHELK+CGYVPDTD ILNTK+S+KDH
Sbjct: 481 AGDKYHADADNIYSMLDLLFHELKVCGYVPDTDIILNTKDSNKDH 522

[Close]

BLAST of HG10021708 vs. NCBI nr
Match: XP_022967078.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucurbita maxima])

HSP 1 Score: 907.9 bits (2345), Expect = 4.0e-260
Identity = 442/527 (83.87%), Postives = 476/527 (90.32%), Query Frame = 0


Query: 1   MSSIPSHIAIPSQH--QQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIV 60
           MSS+PSH  IP Q   QQ  NPPS IP SNP+ L+FPR+PNSS          N I PIV
Sbjct: 1   MSSVPSHTGIPFQFQLQQYSNPPSPIPHSNPSNLSFPRTPNSS----------NPIKPIV 60

Query: 61  LWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHG 120
           LWTSS+ARYCRN QL+EAAAEFTRMRLAGVEPNH+TFITLLSGCADFPS SL FG+ LHG
Sbjct: 61  LWTSSIARYCRNAQLAEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHG 120

Query: 121 YARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIE 180
           Y RK GLDTGHVMVGTALI MYAKCAQLGLAR VFDYL +KNSV+WNTMLDGY RNGEIE
Sbjct: 121 YVRKLGLDTGHVMVGTALIAMYAKCAQLGLARNVFDYLAMKNSVTWNTMLDGYMRNGEIE 180

Query: 181 LALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACA 240
           LA++LFDEMPTRDAISWTALING  K GYSEQALECFH+MQCSGIEPDYVSIIAVLAACA
Sbjct: 181 LAIELFDEMPTRDAISWTALINGFLKQGYSEQALECFHEMQCSGIEPDYVSIIAVLAACA 240

Query: 241 DLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNS 300
           DLGAL+ GLWVNRF+MQQEFKDNIRISNSLIDMYSRCGCIEFARQVF+KM K TLVSWNS
Sbjct: 241 DLGALSFGLWVNRFLMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFDKMSKHTLVSWNS 300

Query: 301 IIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVH 360
           +IVGFA+NGFADESLEFFDAMQKEGF  DGVSYTGALTAC+HAGLVNKGLELFDNMK VH
Sbjct: 301 MIVGFAINGFADESLEFFDAMQKEGFMADGVSYTGALTACSHAGLVNKGLELFDNMKRVH 360

Query: 361 RITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERL 420
           RITPRIEHYGCIVDLY RAGRLD+ALNVIE MPMKPNEVVLGSLLAACRTHGDVSLAERL
Sbjct: 361 RITPRIEHYGCIVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERL 420

Query: 421 MKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHE 480
           +K+LF+LDPGGDS+YVLLSNIYAA+G+WEGANKVRRTMKARGVQKKPG SS+EIDGKVHE
Sbjct: 421 IKYLFELDPGGDSSYVLLSNIYAAVGRWEGANKVRRTMKARGVQKKPGFSSIEIDGKVHE 480

Query: 481 FVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKDH 526
           FV+GDKYH DAD+IYSMLE+LFHELKI GYVP+T T +N  ESSK++
Sbjct: 481 FVAGDKYHVDADNIYSMLEVLFHELKIYGYVPETATFMNGNESSKEY 517

[Close]

BLAST of HG10021708 vs. ExPASy Swiss-Prot
Match: Q9MA50 (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PDE247 PE=2 SV=1)

HSP 1 Score: 595.1 bits (1533), Expect = 7.6e-169
Identity = 284/477 (59.54%), Postives = 364/477 (76.31%), Query Frame = 0


Query: 41  SHRNISS----KFTANSIDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFI 100
           +H+N ++    +   ++ +  V WTS +    RNG+L+EAA EF+ M LAGVEPNH+TFI
Sbjct: 16  THKNHANPKIQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFI 75

Query: 101 TLLSGCADFPSESLFFGSLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYL 160
            LLSGC DF S S   G LLHGYA K GLD  HVMVGTA+I MY+K  +   AR VFDY+
Sbjct: 76  ALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYM 135

Query: 161 GVKNSVSWNTMLDGYTRNGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFH 220
             KNSV+WNTM+DGY R+G+++ A  +FD+MP RD ISWTA+ING  K GY E+AL  F 
Sbjct: 136 EDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFR 195

Query: 221 QMQCSGIEPDYVSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCG 280
           +MQ SG++PDYV+IIA L AC +LGAL+ GLWV+R+V+ Q+FK+N+R+SNSLID+Y RCG
Sbjct: 196 EMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCG 255

Query: 281 CIEFARQVFEKMPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALT 340
           C+EFARQVF  M KRT+VSWNS+IVGFA NG A ESL +F  MQ++GFKPD V++TGALT
Sbjct: 256 CVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALT 315

Query: 341 ACTHAGLVNKGLELFDNMKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNE 400
           AC+H GLV +GL  F  MK  +RI+PRIEHYGC+VDLY RAGRL+DAL +++ MPMKPNE
Sbjct: 316 ACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNE 375

Query: 401 VVLGSLLAACRTHG-DVSLAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRT 460
           VV+GSLLAAC  HG ++ LAERLMKHL  L+    SNYV+LSN+YAA GKWEGA+K+RR 
Sbjct: 376 VVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRK 435

Query: 461 MKARGVQKKPGCSSVEIDGKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDT 513
           MK  G++K+PG SS+EID  +H F++GD  H +   I  +LEL+  +L++ G V +T
Sbjct: 436 MKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVET 492

[Close]

BLAST of HG10021708 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 5.9e-105
Identity = 181/475 (38.11%), Postives = 294/475 (61.89%), Query Frame = 0


Query: 43  RNISSKFTANSIDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGC 102
           + +  ++ A+++D   L  +  + Y R G   EA   F  M  +GV P+ ++ ++ +S C
Sbjct: 291 KRLFDEYGASNLD---LCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 350

Query: 103 ADFPSESLFFGSLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSV 162
           +     ++ +G   HGY  + G ++    +  ALIDMY KC +   A ++FD +  K  V
Sbjct: 351 SQL--RNILWGKSCHGYVLRNGFESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVV 410

Query: 163 SWNTMLDGYTRNGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQC-S 222
           +WN+++ GY  NGE++ A + F+ MP ++ +SW  +I+GL +    E+A+E F  MQ   
Sbjct: 411 TWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQE 470

Query: 223 GIEPDYVSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFA 282
           G+  D V+++++ +AC  LGAL L  W+  ++ +   + ++R+  +L+DM+SRCG  E A
Sbjct: 471 GVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESA 530

Query: 283 RQVFEKMPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHA 342
             +F  +  R + +W + I   A+ G A+ ++E FD M ++G KPDGV++ GALTAC+H 
Sbjct: 531 MSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHG 590

Query: 343 GLVNKGLELFDNMKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGS 402
           GLV +G E+F +M  +H ++P   HYGC+VDL GRAG L++A+ +IE+MPM+PN+V+  S
Sbjct: 591 GLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNS 650

Query: 403 LLAACRTHGDVSLAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGV 462
           LLAACR  G+V +A    + +  L P    +YVLLSN+YA+ G+W    KVR +MK +G+
Sbjct: 651 LLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 710

Query: 463 QKKPGCSSVEIDGKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTIL 517
           +K PG SS++I GK HEF SGD+ H +  +I +ML+ +       G+VPD   +L
Sbjct: 711 RKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVL 759

[Close]

BLAST of HG10021708 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.1e-103
Identity = 185/474 (39.03%), Postives = 292/474 (61.60%), Query Frame = 0


Query: 53  SIDP-IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLF 112
           +IDP + L+T+++     NG   +A   + ++  + + PN  TF +LL  C      S  
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC------STK 149

Query: 113 FGSLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGY 172
            G L+H +  KFGL      V T L+D+YAK   +  A+KVFD +  ++ VS   M+  Y
Sbjct: 150 SGKLIHTHVLKFGLGI-DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 209

Query: 173 TRNGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSG-IEPDYVSI 232
            + G +E A  LFD M  RD +SW  +I+G  +HG+   AL  F ++   G  +PD +++
Sbjct: 210 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 269

Query: 233 IAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPK 292
           +A L+AC+ +GAL  G W++ FV     + N+++   LIDMYS+CG +E A  VF   P+
Sbjct: 270 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 329

Query: 293 RTLVSWNSIIVGFAVNGFADESLEFFDAMQK-EGFKPDGVSYTGALTACTHAGLVNKGLE 352
           + +V+WN++I G+A++G++ ++L  F+ MQ   G +P  +++ G L AC HAGLVN+G+ 
Sbjct: 330 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 389

Query: 353 LFDNMKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTH 412
           +F++M   + I P+IEHYGC+V L GRAG+L  A   I+ M M  + V+  S+L +C+ H
Sbjct: 390 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 449

Query: 413 GDVSLAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSS 472
           GD  L + + ++L  L+      YVLLSNIYA++G +EG  KVR  MK +G+ K+PG S+
Sbjct: 450 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 509

Query: 473 VEIDGKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSK 524
           +EI+ KVHEF +GD+ H+ +  IY+ML  +   +K  GYVP+T+T+L   E ++
Sbjct: 510 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETE 556

[Close]

BLAST of HG10021708 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.9e-103
Identity = 175/476 (36.76%), Postives = 296/476 (62.18%), Query Frame = 0


Query: 49  FTANSIDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSE 108
           FT      +V W S +  + + G   +A   F +M    V+ +HVT + +LS CA     
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI--R 248

Query: 109 SLFFGSLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTML 168
           +L FG  +  Y  +  ++  ++ +  A++DMY KC  +  A+++FD +  K++V+W TML
Sbjct: 249 NLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML 308

Query: 169 DGYTRNGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQC-SGIEPDY 228
           DGY  + + E A ++ + MP +D ++W ALI+   ++G   +AL  FH++Q    ++ + 
Sbjct: 309 DGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQ 368

Query: 229 VSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEK 288
           +++++ L+ACA +GAL LG W++ ++ +   + N  ++++LI MYS+CG +E +R+VF  
Sbjct: 369 ITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 428

Query: 289 MPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKG 348
           + KR +  W+++I G A++G  +E+++ F  MQ+   KP+GV++T    AC+H GLV++ 
Sbjct: 429 VEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEA 488

Query: 349 LELFDNMKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACR 408
             LF  M+S + I P  +HY CIVD+ GR+G L+ A+  IE MP+ P+  V G+LL AC+
Sbjct: 489 ESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACK 548

Query: 409 THGDVSLAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGC 468
            H +++LAE     L +L+P  D  +VLLSNIYA +GKWE  +++R+ M+  G++K+PGC
Sbjct: 549 IHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGC 608

Query: 469 SSVEIDGKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSK 524
           SS+EIDG +HEF+SGD  H  ++ +Y  L  +  +LK  GY P+   +L   E  +
Sbjct: 609 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEE 661

[Close]

BLAST of HG10021708 vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 6.8e-101
Identity = 176/463 (38.01%), Postives = 286/463 (61.77%), Query Frame = 0


Query: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGC---ADFPSESLFFG 116
           +V W + + RYCR G + EA   F  M+ + V P+ +    ++S C    +       + 
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYE 236

Query: 117 SLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTR 176
            L+    R   +DT H++  TAL+ MYA    + +AR+ F  + V+N      M+ GY++
Sbjct: 237 FLIENDVR---MDT-HLL--TALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 296

Query: 177 NGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAV 236
            G ++ A  +FD+   +D + WT +I+   +  Y ++AL  F +M CSGI+PD VS+ +V
Sbjct: 297 CGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSV 356

Query: 237 LAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTL 296
           ++ACA+LG L    WV+  +     +  + I+N+LI+MY++CG ++  R VFEKMP+R +
Sbjct: 357 ISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV 416

Query: 297 VSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDN 356
           VSW+S+I   +++G A ++L  F  M++E  +P+ V++ G L  C+H+GLV +G ++F +
Sbjct: 417 VSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFAS 476

Query: 357 MKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVS 416
           M   + ITP++EHYGC+VDL+GRA  L +AL VIE MP+  N V+ GSL++ACR HG++ 
Sbjct: 477 MTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELE 536

Query: 417 LAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEID 476
           L +   K + +L+P  D   VL+SNIYA   +WE    +RR M+ + V K+ G S ++ +
Sbjct: 537 LGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQN 596

Query: 477 GKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTIL 517
           GK HEF+ GDK H  ++ IY+ L+ +  +LK+ GYVPD  ++L
Sbjct: 597 GKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVL 633

[Close]

BLAST of HG10021708 vs. ExPASy TrEMBL
Match: A0A6J1CN07 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012760 PE=4 SV=1)

HSP 1 Score: 956.8 bits (2472), Expect = 3.7e-275
Identity = 466/525 (88.76%), Postives = 492/525 (93.71%), Query Frame = 0


Query: 1   MSSIPSHIAIPSQHQQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIVLW 60
           MSSIP++ A   Q QQ PNP +SIPL NP  +NFPRS NSS+R+ISSK T NSIDPIVLW
Sbjct: 1   MSSIPANTAAAVQLQQYPNPATSIPLPNPETINFPRSENSSNRHISSKSTGNSIDPIVLW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHGYA 120
           TSS+ARYCRNGQL+EAAAEFT MRLAGVEPNHVT ITLLSGCADFPSESL+FGS LHGYA
Sbjct: 61  TSSIARYCRNGQLAEAAAEFTSMRLAGVEPNHVTLITLLSGCADFPSESLYFGSSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
           RK GLDT HVMVGT+++DMYAKCAQLGLAR+VFDYL +KNSVSWNTMLDGYTRNGEIELA
Sbjct: 121 RKLGLDTAHVMVGTSIVDMYAKCAQLGLARRVFDYLRMKNSVSWNTMLDGYTRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           +DLFDEMPTRDAISWTALINGL K GYSEQALECFHQMQCSGI+PDYVSIIAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGYSEQALECFHQMQCSGIKPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           G LTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCI FARQVFE+M KRTLVSWNSII
Sbjct: 241 GTLTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIGFARQVFERMSKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVHRI 360
           VG+A NGFADESLEFFDAMQKEGFKPD VSYTGALTAC+HAGLVNKGLELFDNMK VHRI
Sbjct: 301 VGYAANGFADESLEFFDAMQKEGFKPDAVSYTGALTACSHAGLVNKGLELFDNMKRVHRI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420
            PRIEHYGCIVDLYGRAGRL+DAL+VIE+MPMKPNEVVLGSLLAACRTHGDVSLAERLMK
Sbjct: 361 IPRIEHYGCIVDLYGRAGRLEDALDVIEKMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           HL KLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPG SSVEIDGKVHEFV
Sbjct: 421 HLSKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480

Query: 481 SGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKDH 526
           +GDKYHADADSIYSML+LL HELKICG VP+T+T LNTKESSKDH
Sbjct: 481 AGDKYHADADSIYSMLQLLVHELKICGSVPETETFLNTKESSKDH 525

[Close]

BLAST of HG10021708 vs. ExPASy TrEMBL
Match: A0A0A0LYD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169950 PE=4 SV=1)

HSP 1 Score: 950.3 bits (2455), Expect = 3.4e-273
Identity = 466/524 (88.93%), Postives = 489/524 (93.32%), Query Frame = 0


Query: 1   MSSIPSHIAIPSQHQQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIVLW 60
           MSSIPSH A PSQ Q  P  PSSIPLSNPTKLNFPRSPNS HRNISSKF  NS+DPIVLW
Sbjct: 1   MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHGYA 120
           TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNH+TFITLLS CADFPSES FF S LHGYA
Sbjct: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
            K+GLDTGHVMVGTALIDMY+KCAQLG ARKVF  LGVKNSVSWNTML+G+ RNGEIELA
Sbjct: 121 CKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           + LFDEMPTRDAISWTALINGL KHGYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALTLGLWV+RFVM QEFKDNI+ISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVHRI 360
           VGFAVNGFADESLEFF AMQKEGFKPDGVSYTGALTAC+HAGLVNKGLELFDNMKSVH+I
Sbjct: 301 VGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420
           TPRIEHYGCIVDLYGRAGRL+DALN+IEEMPMKPNEVVLGSLLAACRTHGDV+LAERLMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           HLFKLDP GD+ YVLLSNIYAAIGKW+GAN VRRTMKARGVQKKPG SSVEIDGKVHEFV
Sbjct: 421 HLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFV 480

Query: 481 SGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKD 525
           +GD YHADAD+IYSML+LL HELK+CGYVP +DTILNTKES+KD
Sbjct: 481 AGDNYHADADNIYSMLDLLCHELKVCGYVPGSDTILNTKESNKD 524

[Close]

BLAST of HG10021708 vs. ExPASy TrEMBL
Match: A0A5A7UJB6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G002000 PE=4 SV=1)

HSP 1 Score: 943.0 bits (2436), Expect = 5.5e-271
Identity = 465/525 (88.57%), Postives = 488/525 (92.95%), Query Frame = 0


Query: 1   MSSIPSHIAIPSQHQQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIVLW 60
           MSSIPSHIA PSQ QQ P+  SSIPLSNPTK+NFPRSP S H NI SKFTANS+ PIV W
Sbjct: 1   MSSIPSHIASPSQLQQPPS--SSIPLSNPTKVNFPRSPKSPHCNIFSKFTANSVHPIVQW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHGYA 120
           TSS+ARYC NGQL EAAAEFTRMRLAGVEPNH+TFITLLSGCADFPSES FF S LHGYA
Sbjct: 61  TSSIARYCGNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSES-FFASSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
            KFGLDTGHVMVGTALIDMY+KC+QLGLA+KVFDYLGVKNSVSWNTML+G+ RNGEIELA
Sbjct: 121 CKFGLDTGHVMVGTALIDMYSKCSQLGLAKKVFDYLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           + LFDEMPTRDAISWTALINGL KHGYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVVADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALT GLWVNRFVMQQEFKDN+RISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTSGLWVNRFVMQQEFKDNVRISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVHRI 360
           VGFA NGFADESLEFF AMQKEGFKPDGVSYTGALTAC+HAGLVNKGLELFDNMK VH+I
Sbjct: 301 VGFAFNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420
           TP IEHYGCIVDLYGRAGRL+DA NVIEEMPMKPNEVVLGSLLAACRTHGDV LAERLMK
Sbjct: 361 TPGIEHYGCIVDLYGRAGRLEDASNVIEEMPMKPNEVVLGSLLAACRTHGDVRLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           H+FKLD  GDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKK G SSVEIDGKVHEFV
Sbjct: 421 HIFKLDSVGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKRGYSSVEIDGKVHEFV 480

Query: 481 SGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKDH 526
           +GDKYHADAD+IYSML+LLFHELK+CGYVPDTD ILNTK+S+KDH
Sbjct: 481 AGDKYHADADNIYSMLDLLFHELKVCGYVPDTDIILNTKDSNKDH 522

[Close]

BLAST of HG10021708 vs. ExPASy TrEMBL
Match: A0A1S3C956 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498199 PE=4 SV=1)

HSP 1 Score: 943.0 bits (2436), Expect = 5.5e-271
Identity = 465/525 (88.57%), Postives = 488/525 (92.95%), Query Frame = 0


Query: 1   MSSIPSHIAIPSQHQQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIVLW 60
           MSSIPSHIA PSQ QQ P+  SSIPLSNPTK+NFPRSP S H NI SKFTANS+ PIV W
Sbjct: 1   MSSIPSHIASPSQLQQPPS--SSIPLSNPTKVNFPRSPKSPHCNIFSKFTANSVHPIVQW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHGYA 120
           TSS+ARYC NGQL EAAAEFTRMRLAGVEPNH+TFITLLSGCADFPSES FF S LHGYA
Sbjct: 61  TSSIARYCGNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSES-FFASSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
            KFGLDTGHVMVGTALIDMY+KC+QLGLA+KVFDYLGVKNSVSWNTML+G+ RNGEIELA
Sbjct: 121 CKFGLDTGHVMVGTALIDMYSKCSQLGLAKKVFDYLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           + LFDEMPTRDAISWTALINGL KHGYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVVADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALT GLWVNRFVMQQEFKDN+RISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTSGLWVNRFVMQQEFKDNVRISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVHRI 360
           VGFA NGFADESLEFF AMQKEGFKPDGVSYTGALTAC+HAGLVNKGLELFDNMK VH+I
Sbjct: 301 VGFAFNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420
           TP IEHYGCIVDLYGRAGRL+DA NVIEEMPMKPNEVVLGSLLAACRTHGDV LAERLMK
Sbjct: 361 TPGIEHYGCIVDLYGRAGRLEDASNVIEEMPMKPNEVVLGSLLAACRTHGDVRLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           H+FKLD  GDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKK G SSVEIDGKVHEFV
Sbjct: 421 HIFKLDSVGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKRGYSSVEIDGKVHEFV 480

Query: 481 SGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKDH 526
           +GDKYHADAD+IYSML+LLFHELK+CGYVPDTD ILNTK+S+KDH
Sbjct: 481 AGDKYHADADNIYSMLDLLFHELKVCGYVPDTDIILNTKDSNKDH 522

[Close]

BLAST of HG10021708 vs. ExPASy TrEMBL
Match: A0A6J1HU31 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466586 PE=4 SV=1)

HSP 1 Score: 907.9 bits (2345), Expect = 2.0e-260
Identity = 442/527 (83.87%), Postives = 476/527 (90.32%), Query Frame = 0


Query: 1   MSSIPSHIAIPSQH--QQCPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFTANSIDPIV 60
           MSS+PSH  IP Q   QQ  NPPS IP SNP+ L+FPR+PNSS          N I PIV
Sbjct: 1   MSSVPSHTGIPFQFQLQQYSNPPSPIPHSNPSNLSFPRTPNSS----------NPIKPIV 60

Query: 61  LWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSLLHG 120
           LWTSS+ARYCRN QL+EAAAEFTRMRLAGVEPNH+TFITLLSGCADFPS SL FG+ LHG
Sbjct: 61  LWTSSIARYCRNAQLAEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHG 120

Query: 121 YARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIE 180
           Y RK GLDTGHVMVGTALI MYAKCAQLGLAR VFDYL +KNSV+WNTMLDGY RNGEIE
Sbjct: 121 YVRKLGLDTGHVMVGTALIAMYAKCAQLGLARNVFDYLAMKNSVTWNTMLDGYMRNGEIE 180

Query: 181 LALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACA 240
           LA++LFDEMPTRDAISWTALING  K GYSEQALECFH+MQCSGIEPDYVSIIAVLAACA
Sbjct: 181 LAIELFDEMPTRDAISWTALINGFLKQGYSEQALECFHEMQCSGIEPDYVSIIAVLAACA 240

Query: 241 DLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNS 300
           DLGAL+ GLWVNRF+MQQEFKDNIRISNSLIDMYSRCGCIEFARQVF+KM K TLVSWNS
Sbjct: 241 DLGALSFGLWVNRFLMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFDKMSKHTLVSWNS 300

Query: 301 IIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKGLELFDNMKSVH 360
           +IVGFA+NGFADESLEFFDAMQKEGF  DGVSYTGALTAC+HAGLVNKGLELFDNMK VH
Sbjct: 301 MIVGFAINGFADESLEFFDAMQKEGFMADGVSYTGALTACSHAGLVNKGLELFDNMKRVH 360

Query: 361 RITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSLAERL 420
           RITPRIEHYGCIVDLY RAGRLD+ALNVIE MPMKPNEVVLGSLLAACRTHGDVSLAERL
Sbjct: 361 RITPRIEHYGCIVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERL 420

Query: 421 MKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHE 480
           +K+LF+LDPGGDS+YVLLSNIYAA+G+WEGANKVRRTMKARGVQKKPG SS+EIDGKVHE
Sbjct: 421 IKYLFELDPGGDSSYVLLSNIYAAVGRWEGANKVRRTMKARGVQKKPGFSSIEIDGKVHE 480

Query: 481 FVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSKDH 526
           FV+GDKYH DAD+IYSMLE+LFHELKI GYVP+T T +N  ESSK++
Sbjct: 481 FVAGDKYHVDADNIYSMLEVLFHELKIYGYVPETATFMNGNESSKEY 517

[Close]

BLAST of HG10021708 vs. TAIR 10
Match: AT1G05750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 595.1 bits (1533), Expect = 5.4e-170
Identity = 284/477 (59.54%), Postives = 364/477 (76.31%), Query Frame = 0


Query: 41  SHRNISS----KFTANSIDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFI 100
           +H+N ++    +   ++ +  V WTS +    RNG+L+EAA EF+ M LAGVEPNH+TFI
Sbjct: 16  THKNHANPKIQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFI 75

Query: 101 TLLSGCADFPSESLFFGSLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYL 160
            LLSGC DF S S   G LLHGYA K GLD  HVMVGTA+I MY+K  +   AR VFDY+
Sbjct: 76  ALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYM 135

Query: 161 GVKNSVSWNTMLDGYTRNGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFH 220
             KNSV+WNTM+DGY R+G+++ A  +FD+MP RD ISWTA+ING  K GY E+AL  F 
Sbjct: 136 EDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFR 195

Query: 221 QMQCSGIEPDYVSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCG 280
           +MQ SG++PDYV+IIA L AC +LGAL+ GLWV+R+V+ Q+FK+N+R+SNSLID+Y RCG
Sbjct: 196 EMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCG 255

Query: 281 CIEFARQVFEKMPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALT 340
           C+EFARQVF  M KRT+VSWNS+IVGFA NG A ESL +F  MQ++GFKPD V++TGALT
Sbjct: 256 CVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALT 315

Query: 341 ACTHAGLVNKGLELFDNMKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNE 400
           AC+H GLV +GL  F  MK  +RI+PRIEHYGC+VDLY RAGRL+DAL +++ MPMKPNE
Sbjct: 316 ACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNE 375

Query: 401 VVLGSLLAACRTHG-DVSLAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRT 460
           VV+GSLLAAC  HG ++ LAERLMKHL  L+    SNYV+LSN+YAA GKWEGA+K+RR 
Sbjct: 376 VVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRK 435

Query: 461 MKARGVQKKPGCSSVEIDGKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDT 513
           MK  G++K+PG SS+EID  +H F++GD  H +   I  +LEL+  +L++ G V +T
Sbjct: 436 MKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVET 492

[Close]

BLAST of HG10021708 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 382.9 bits (982), Expect = 4.2e-106
Identity = 181/475 (38.11%), Postives = 294/475 (61.89%), Query Frame = 0


Query: 43  RNISSKFTANSIDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGC 102
           + +  ++ A+++D   L  +  + Y R G   EA   F  M  +GV P+ ++ ++ +S C
Sbjct: 291 KRLFDEYGASNLD---LCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 350

Query: 103 ADFPSESLFFGSLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSV 162
           +     ++ +G   HGY  + G ++    +  ALIDMY KC +   A ++FD +  K  V
Sbjct: 351 SQL--RNILWGKSCHGYVLRNGFESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVV 410

Query: 163 SWNTMLDGYTRNGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQC-S 222
           +WN+++ GY  NGE++ A + F+ MP ++ +SW  +I+GL +    E+A+E F  MQ   
Sbjct: 411 TWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQE 470

Query: 223 GIEPDYVSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFA 282
           G+  D V+++++ +AC  LGAL L  W+  ++ +   + ++R+  +L+DM+SRCG  E A
Sbjct: 471 GVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESA 530

Query: 283 RQVFEKMPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHA 342
             +F  +  R + +W + I   A+ G A+ ++E FD M ++G KPDGV++ GALTAC+H 
Sbjct: 531 MSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHG 590

Query: 343 GLVNKGLELFDNMKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGS 402
           GLV +G E+F +M  +H ++P   HYGC+VDL GRAG L++A+ +IE+MPM+PN+V+  S
Sbjct: 591 GLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNS 650

Query: 403 LLAACRTHGDVSLAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGV 462
           LLAACR  G+V +A    + +  L P    +YVLLSN+YA+ G+W    KVR +MK +G+
Sbjct: 651 LLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 710

Query: 463 QKKPGCSSVEIDGKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTIL 517
           +K PG SS++I GK HEF SGD+ H +  +I +ML+ +       G+VPD   +L
Sbjct: 711 RKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVL 759

[Close]

BLAST of HG10021708 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 382.9 bits (982), Expect = 4.2e-106
Identity = 181/475 (38.11%), Postives = 294/475 (61.89%), Query Frame = 0


Query: 43  RNISSKFTANSIDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGC 102
           + +  ++ A+++D   L  +  + Y R G   EA   F  M  +GV P+ ++ ++ +S C
Sbjct: 291 KRLFDEYGASNLD---LCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 350

Query: 103 ADFPSESLFFGSLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSV 162
           +     ++ +G   HGY  + G ++    +  ALIDMY KC +   A ++FD +  K  V
Sbjct: 351 SQL--RNILWGKSCHGYVLRNGFESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVV 410

Query: 163 SWNTMLDGYTRNGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQC-S 222
           +WN+++ GY  NGE++ A + F+ MP ++ +SW  +I+GL +    E+A+E F  MQ   
Sbjct: 411 TWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQE 470

Query: 223 GIEPDYVSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFA 282
           G+  D V+++++ +AC  LGAL L  W+  ++ +   + ++R+  +L+DM+SRCG  E A
Sbjct: 471 GVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESA 530

Query: 283 RQVFEKMPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHA 342
             +F  +  R + +W + I   A+ G A+ ++E FD M ++G KPDGV++ GALTAC+H 
Sbjct: 531 MSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHG 590

Query: 343 GLVNKGLELFDNMKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGS 402
           GLV +G E+F +M  +H ++P   HYGC+VDL GRAG L++A+ +IE+MPM+PN+V+  S
Sbjct: 591 GLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNS 650

Query: 403 LLAACRTHGDVSLAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGV 462
           LLAACR  G+V +A    + +  L P    +YVLLSN+YA+ G+W    KVR +MK +G+
Sbjct: 651 LLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 710

Query: 463 QKKPGCSSVEIDGKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTIL 517
           +K PG SS++I GK HEF SGD+ H +  +I +ML+ +       G+VPD   +L
Sbjct: 711 RKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVL 759

[Close]

BLAST of HG10021708 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 378.6 bits (971), Expect = 7.9e-105
Identity = 185/474 (39.03%), Postives = 292/474 (61.60%), Query Frame = 0


Query: 53  SIDP-IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLF 112
           +IDP + L+T+++     NG   +A   + ++  + + PN  TF +LL  C      S  
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC------STK 149

Query: 113 FGSLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGY 172
            G L+H +  KFGL      V T L+D+YAK   +  A+KVFD +  ++ VS   M+  Y
Sbjct: 150 SGKLIHTHVLKFGLGI-DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 209

Query: 173 TRNGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQCSG-IEPDYVSI 232
            + G +E A  LFD M  RD +SW  +I+G  +HG+   AL  F ++   G  +PD +++
Sbjct: 210 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 269

Query: 233 IAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPK 292
           +A L+AC+ +GAL  G W++ FV     + N+++   LIDMYS+CG +E A  VF   P+
Sbjct: 270 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 329

Query: 293 RTLVSWNSIIVGFAVNGFADESLEFFDAMQK-EGFKPDGVSYTGALTACTHAGLVNKGLE 352
           + +V+WN++I G+A++G++ ++L  F+ MQ   G +P  +++ G L AC HAGLVN+G+ 
Sbjct: 330 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 389

Query: 353 LFDNMKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACRTH 412
           +F++M   + I P+IEHYGC+V L GRAG+L  A   I+ M M  + V+  S+L +C+ H
Sbjct: 390 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 449

Query: 413 GDVSLAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSS 472
           GD  L + + ++L  L+      YVLLSNIYA++G +EG  KVR  MK +G+ K+PG S+
Sbjct: 450 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 509

Query: 473 VEIDGKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSK 524
           +EI+ KVHEF +GD+ H+ +  IY+ML  +   +K  GYVP+T+T+L   E ++
Sbjct: 510 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETE 556

[Close]

BLAST of HG10021708 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 377.9 bits (969), Expect = 1.4e-104
Identity = 175/476 (36.76%), Postives = 296/476 (62.18%), Query Frame = 0


Query: 49  FTANSIDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSE 108
           FT      +V W S +  + + G   +A   F +M    V+ +HVT + +LS CA     
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI--R 248

Query: 109 SLFFGSLLHGYARKFGLDTGHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTML 168
           +L FG  +  Y  +  ++  ++ +  A++DMY KC  +  A+++FD +  K++V+W TML
Sbjct: 249 NLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML 308

Query: 169 DGYTRNGEIELALDLFDEMPTRDAISWTALINGLFKHGYSEQALECFHQMQC-SGIEPDY 228
           DGY  + + E A ++ + MP +D ++W ALI+   ++G   +AL  FH++Q    ++ + 
Sbjct: 309 DGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQ 368

Query: 229 VSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEK 288
           +++++ L+ACA +GAL LG W++ ++ +   + N  ++++LI MYS+CG +E +R+VF  
Sbjct: 369 ITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 428

Query: 289 MPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACTHAGLVNKG 348
           + KR +  W+++I G A++G  +E+++ F  MQ+   KP+GV++T    AC+H GLV++ 
Sbjct: 429 VEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEA 488

Query: 349 LELFDNMKSVHRITPRIEHYGCIVDLYGRAGRLDDALNVIEEMPMKPNEVVLGSLLAACR 408
             LF  M+S + I P  +HY CIVD+ GR+G L+ A+  IE MP+ P+  V G+LL AC+
Sbjct: 489 ESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACK 548

Query: 409 THGDVSLAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGC 468
            H +++LAE     L +L+P  D  +VLLSNIYA +GKWE  +++R+ M+  G++K+PGC
Sbjct: 549 IHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGC 608

Query: 469 SSVEIDGKVHEFVSGDKYHADADSIYSMLELLFHELKICGYVPDTDTILNTKESSK 524
           SS+EIDG +HEF+SGD  H  ++ +Y  L  +  +LK  GY P+   +L   E  +
Sbjct: 609 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEE 661

The following BLAST results are available for this feature:

BLAST of HG10021708 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877228.1	7.1e-289	92.95	pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Benincasa ...	[more]
XP_022142716.1	7.6e-275	88.76	pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Momordica ...	[more]
XP_004139593.1	7.1e-273	88.93	pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucumis sa...	[more]
XP_008458940.1	1.1e-270	88.57	PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic ...	[more]
XP_022967078.1	4.0e-260	83.87	pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucurbita ...	[more]

BLAST of HG10021708 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MA50	7.6e-169	59.54	Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidop...	[more]
Q9LUJ2	5.9e-105	38.11	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX...	[more]
Q9SZT8	1.1e-103	39.03	Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t...	[more]
O82380	1.9e-103	36.76	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
O23337	6.8e-101	38.01	Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX...	[more]

BLAST of HG10021708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN07	3.7e-275	88.76	pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Momordic...	[more]
A0A0A0LYD6	3.4e-273	88.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169950 PE=4 SV=1	[more]
A0A5A7UJB6	5.5e-271	88.57	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C956	5.5e-271	88.57	pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucumis ...	[more]
A0A6J1HU31	2.0e-260	83.87	pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucurbit...	[more]

BLAST of HG10021708 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05750.1	5.4e-170	59.54	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G22690.1	4.2e-106	38.11	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012...	[more]
AT3G22690.2	4.2e-106	38.11	INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro...	[more]
AT4G37380.1	7.9e-105	39.03	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G29760.1	1.4e-104	36.76	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 244..355 e-value: 3.6E-25 score: 91.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 48..109 e-value: 1.2E-8 score: 36.5 coord: 119..243 e-value: 1.4E-30 score: 108.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 356..425 e-value: 2.0E-7 score: 32.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 57..103 e-value: 2.6E-8 score: 33.9 coord: 191..238 e-value: 5.2E-10 score: 39.4 coord: 293..338 e-value: 3.5E-7 score: 30.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 294..327 e-value: 3.0E-6 score: 25.1 coord: 193..226 e-value: 2.4E-9 score: 34.8 coord: 162..190 e-value: 2.8E-8 score: 31.4 coord: 266..291 e-value: 0.0012 score: 16.9 coord: 367..390 e-value: 8.2E-4 score: 17.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 366..391 e-value: 0.0016 score: 18.5 coord: 266..291 e-value: 1.1E-4 score: 22.2 coord: 162..189 e-value: 9.3E-9 score: 35.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 56..90 score: 9.667924
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 191..225 score: 12.145178
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 292..326 score: 11.597113
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 160..190 score: 11.355965
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 261..291 score: 8.911594
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR47926:SF65	BNAANNG25350D PROTEIN	coord: 41..512
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 41..512

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021708.1	HG10021708.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding