HG10021682 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021682
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Sodium/hydrogen exchanger
Location	Chr05: 13868094 .. 13868342 (-)
RNA-Seq Expression	HG10021682
Synteny	HG10021682

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTAAAGAGTTTCATGAGAGGTGACATCTAATATCCTTCTTTCATATTCAGACTTTTTCTGTTTGTTGAATCATCATTAAAATGTCTCTTTTTTTCCACAGTACTGCGTCGTTTACAGCTTTGAATAGGAACTACCTGACCCCATTCTTTAAGAGTCGCAGTGGTGATGATGAGGGAAATGACAATAGTAAGAATGACTTAAACTCAGTTCATGGTTTGAACAGTTTGATAGTTTGTGTATAG

mRNA sequence

ATGAAGCTTAAAGAGTTTCATGAGAGTACTGCGTCGTTTACAGCTTTGAATAGGAACTACCTGACCCCATTCTTTAAGAGTCGCAGTGGTGATGATGAGGGAAATGACAATAGTAAGAATGACTTAAACTCAGTTCATGGTTTGAACAGTTTGATAGTTTGTGTATAG

Coding sequence (CDS)

ATGAAGCTTAAAGAGTTTCATGAGAGTACTGCGTCGTTTACAGCTTTGAATAGGAACTACCTGACCCCATTCTTTAAGAGTCGCAGTGGTGATGATGAGGGAAATGACAATAGTAAGAATGACTTAAACTCAGTTCATGGTTTGAACAGTTTGATAGTTTGTGTATAG

Protein sequence

MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDNSKNDLNSVHGLNSLIVCV

Homology

[Close]

BLAST of HG10021682 vs. NCBI nr
Match: TYK15496.1 (sodium/hydrogen exchanger 6-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDNSKNDLNSVHGLNS 51
           MKLKEFHESTASFTALNRNYLTPFFKSRSGDDE +DNSKNDLNSVHG NS
Sbjct: 448 MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFNS 497

[Close]

BLAST of HG10021682 vs. NCBI nr
Match: KAA0042377.1 (sodium/hydrogen exchanger 6-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDNSKNDLNSVHGLNS 51
           MKLKEFHESTASFTALNRNYLTPFFKSRSGDDE +DNSKNDLNSVHG NS
Sbjct: 474 MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFNS 523

[Close]

BLAST of HG10021682 vs. NCBI nr
Match: XP_011654824.1 (sodium/hydrogen exchanger 6 [Cucumis sativus] >KAE8652835.1 hypothetical protein Csa_022720 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDNS 39
           MKLKEFHESTASFTALNRNYLTPFFKSRSGDDE +DNS
Sbjct: 537 MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNS 574

[Close]

BLAST of HG10021682 vs. NCBI nr
Match: XP_008464323.1 (PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDNS 39
           MKLKEFHESTASFTALNRNYLTPFFKSRSGDDE +DNS
Sbjct: 299 MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNS 336

[Close]

BLAST of HG10021682 vs. NCBI nr
Match: XP_022973131.1 (sodium/hydrogen exchanger 6-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDN 38
           MKL+EFHESTASFTALNRNYLTPFFKSRSGDDE NDN
Sbjct: 483 MKLREFHESTASFTALNRNYLTPFFKSRSGDDEENDN 519

[Close]

BLAST of HG10021682 vs. ExPASy Swiss-Prot
Match: Q8S396 (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana OX=3702 GN=NHX5 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 5.1e-07
Identity = 23/35 (65.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGN 36
           MKLKEFH++T SFTAL++N+LTPFF + SGD +G+
Sbjct: 485 MKLKEFHKTTTSFTALDKNFLTPFFTTNSGDGDGD 519

[Close]

BLAST of HG10021682 vs. ExPASy Swiss-Prot
Match: Q8RWU6 (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana OX=3702 GN=NHX6 PE=1 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 8.6e-07
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 2   KLKEFHESTASFTALNRNYLTPFFKSRSG--DDEGN 36
           KL+EFH+S ASFT L+RNYLTPFF S +G  DDEGN
Sbjct: 479 KLREFHKSAASFTELDRNYLTPFFTSNNGDYDDEGN 514

[Close]

BLAST of HG10021682 vs. ExPASy TrEMBL
Match: A0A0A0LW39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G177740 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-18
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDNSKNDLNSVHGLNSLIVCV 56
           MKLKEFHESTASFTALNRNYLTPFFKSRSGDDE +DNSKNDLNSVHG  S I+CV
Sbjct: 66  MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFISSILCV 120

[Close]

BLAST of HG10021682 vs. ExPASy TrEMBL
Match: A0A5D3CYK0 (Sodium/hydrogen exchanger 6-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00830 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-17
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDNSKNDLNSVHGLNS 51
           MKLKEFHESTASFTALNRNYLTPFFKSRSGDDE +DNSKNDLNSVHG NS
Sbjct: 448 MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFNS 497

[Close]

BLAST of HG10021682 vs. ExPASy TrEMBL
Match: A0A5A7TKZ1 (Sodium/hydrogen exchanger OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold795G00940 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-17
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDNSKNDLNSVHGLNS 51
           MKLKEFHESTASFTALNRNYLTPFFKSRSGDDE +DNSKNDLNSVHG NS
Sbjct: 474 MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFNS 523

[Close]

BLAST of HG10021682 vs. ExPASy TrEMBL
Match: A0A1S3CL73 (sodium/hydrogen exchanger 6-like OS=Cucumis melo OX=3656 GN=LOC103502237 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDNS 39
           MKLKEFHESTASFTALNRNYLTPFFKSRSGDDE +DNS
Sbjct: 299 MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNS 336

[Close]

BLAST of HG10021682 vs. ExPASy TrEMBL
Match: A0A6J1IAK5 (Sodium/hydrogen exchanger OS=Cucurbita maxima OX=3661 GN=LOC111471648 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGNDN 38
           MKL+EFHESTASFTALNRNYLTPFFKSRSGDDE NDN
Sbjct: 483 MKLREFHESTASFTALNRNYLTPFFKSRSGDDEENDN 519

[Close]

BLAST of HG10021682 vs. TAIR 10
Match: AT1G54370.1 (sodium hydrogen exchanger 5 )

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-08
Identity = 23/35 (65.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MKLKEFHESTASFTALNRNYLTPFFKSRSGDDEGN 36
           MKLKEFH++T SFTAL++N+LTPFF + SGD +G+
Sbjct: 485 MKLKEFHKTTTSFTALDKNFLTPFFTTNSGDGDGD 519

[Close]

BLAST of HG10021682 vs. TAIR 10
Match: AT1G79610.1 (Na+/H+ antiporter 6 )

HSP 1 Score: 53.5 bits (127), Expect = 6.1e-08
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 2   KLKEFHESTASFTALNRNYLTPFFKSRSG--DDEGN 36
           KL+EFH+S ASFT L+RNYLTPFF S +G  DDEGN
Sbjct: 479 KLREFHKSAASFTELDRNYLTPFFTSNNGDYDDEGN 514

The following BLAST results are available for this feature:

BLAST of HG10021682 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15496.1	5.2e-17	94.00	sodium/hydrogen exchanger 6-like isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0042377.1	5.2e-17	94.00	sodium/hydrogen exchanger 6-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_011654824.1	2.1e-10	94.74	sodium/hydrogen exchanger 6 [Cucumis sativus] >KAE8652835.1 hypothetical protein...	[more]
XP_008464323.1	2.1e-10	94.74	PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis melo]	[more]
XP_022973131.1	3.6e-10	94.59	sodium/hydrogen exchanger 6-like isoform X2 [Cucurbita maxima]	[more]

BLAST of HG10021682 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S396	5.1e-07	65.71	Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana OX=3702 GN=NHX5 PE=2 SV=2	[more]
Q8RWU6	8.6e-07	72.22	Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana OX=3702 GN=NHX6 PE=1 SV=3	[more]

BLAST of HG10021682 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW39	3.0e-18	89.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G177740 PE=4 SV=1	[more]
A0A5D3CYK0	2.5e-17	94.00	Sodium/hydrogen exchanger 6-like isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7TKZ1	2.5e-17	94.00	Sodium/hydrogen exchanger OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3CL73	1.0e-10	94.74	sodium/hydrogen exchanger 6-like OS=Cucumis melo OX=3656 GN=LOC103502237 PE=3 SV...	[more]
A0A6J1IAK5	1.7e-10	94.59	Sodium/hydrogen exchanger OS=Cucurbita maxima OX=3661 GN=LOC111471648 PE=3 SV=1	[more]

BLAST of HG10021682 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54370.1	3.6e-08	65.71	sodium hydrogen exchanger 5	[more]
AT1G79610.1	6.1e-08	72.22	Na+/H+ antiporter 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021682.1	HG10021682.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0006885	regulation of pH
biological_process	GO:0035725	sodium ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015385	sodium:proton antiporter activity