HG10020464 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020464
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-H2 finger protein ATL74-like
Location	Chr04: 32055547 .. 32057229 (+)
RNA-Seq Expression	HG10020464
Synteny	HG10020464

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACAGAGGTGGTGCAGGGGAATAGGACGGGTAATTCGTCTTATGTGGGGGAGATGAATTTCGATGCGCACATGGTGGTAATAATGGCGGCCTTATTATGTGCACTCATTGGAGCCCTTGGAGTGAACTCTATCGTACGCTGCGTTTTGCGGTGTGGGTATAGGTTTGGGAGGGAGAGGGCAGATCAGGAGGGCGCACCGGCACCGGGGCTTAAGAAGCGAGAACTCAGTCTGATTCCGATTGGGGTTTATGGAAGTGATGCAAATATTAAGAGCACAGATTGCGGAATTTGCCTTGCCCAGTTTGAAGAGGGCGACAAGCTTAGAATGTTGCCCATTTGCAACCATGGATTCCACCTCACATGCATTGATACCTGGCTCTTCTCTCACTCATCTTGTCCCAACTGCCGCCATTCCCTCAAACCCAAACAACCCGCCCCGCCGCCACCCCACGTCGTTCTGCTCATAGGGACTGCAAATTAGACAAATTATACTTTAATATATATATATATTAGTTTTTTTTTTTTTTTTTTGGGTAATGAGTCGCTTTGTACGAGGCTTTTTATGTTGTTGCAATTTTGTGTATACAACAAACGTTGGAAGGATTGTTTTTTCTTTTGATATGCATTATGCCGAGGATAATTAGGTTTACATACATCCTTCAAACAGCATCATACTTTTTAGTGATATATTTTTTTCCCTTCAAGCAAAAGGAAAATAAGATTTAGGTACACTGTATATGTTTTGCATCCACCAAATTATTCAATCACAATTTACCATAAGTATTGTTCAACTATGTGTCTATATCACAAAACAAGTGAGAGCAAAAAGATTGGCTCAACCAATTAAGCTATCACACTCGAGTTAAATTTCTTTTAGTTTTAGTACATTGGGAAGGGGCATTAAGATTGGGTTCAGCGGGCCGATCAGCCAAATGGGCCGATCATCCAAATGGGCCCATATTGAATGAGATTAGGACAGTATGATGCTTTCACTTGGTTTTCTCCAGTGGCAGTGGACGGTGGACAGTGTTGCGCTGCAAATTGCAATGGCGTTAGGTCATCGGCGGTCATTCAAAATAACTGTTCATGCAAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTCCCTTCCAGGAAATTTCAAGGCCTCCTAAAGCTTGATAAACTACTCATCGGAGTGGATTCCAAATCTGAATCTCGGATCCTCGTTCAACGCCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAGGCATTTGGGGCGTCGGGGATCTAAAATGCCCCAATACTCATACCTACTTGCTGAATCTGAAAATCAATCTTGGCATGTTGGCCGTCTGGTACGGAATCAATCGAGTTTGTGTTTCCATTCAATTTATAGTTTTGTTGATTGTTGACTGTTAATGTGTAGGAACTAAGGTTTGTGGCTGCTTTTGGTGTTGGATTGGCTTATCTTCTTGCACTCAACACACAGATTGGCCTTGGCAATGCCATCCATCCCACCTTCACTTCCTTTATTTGGGTTTGCTTGCTTTTATTTGTTTTATGGCTCCACAAATGTAAGTGCCTTTCGGCAATGCTATTGCTAATCGTTCTGCTTCCTCTCTTACTCTTACCATTCCATACATTTGTACATCTTTTACATTTACGCCACTTTTTATAA

mRNA sequence

ATGGAAACAGAGGTGGTGCAGGGGAATAGGACGGGTAATTCGTCTTATGTGGGGGAGATGAATTTCGATGCGCACATGGTGGTAATAATGGCGGCCTTATTATGTGCACTCATTGGAGCCCTTGGAGTGAACTCTATCTGGCAGTGGACGGTGGACAGTGTTGCGCTGCAAATTGCAATGGCGTTAGGTCATCGGCGGTCATTCAAAATAACTGTTCATGCAAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTCCCTTCCAGGAAATTTCAAGGCCTCCTAAAGCTTGATAAACTACTCATCGGAGTGGATTCCAAATCTGAATCTCGGATCCTCGTTCAACGCCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAGGCATTTGGGGCGTCGGGGATCTAAAATGCCCCAATACTCATACCTACTTGCTGAATCTGAAAATCAATCTTGGCATGTTGGCCGTCTGGAACTAAGGTTTGTGGCTGCTTTTGGTGTTGGATTGGCTTATCTTCTTGCACTCAACACACAGATTGGCCTTGGCAATGCCATCCATCCCACCTTCACTTCCTTTATTTGGGTTTGCTTGCTTTTATTTGTTTTATGGCTCCACAAATGTAAGTGCCTTTCGGCAATGCTATTGCTAATCGTTCTGCTTCCTCTCTTACTCTTACCATTCCATACATTTGTACATCTTTTACATTTACGCCACTTTTTATAA

Coding sequence (CDS)

ATGGAAACAGAGGTGGTGCAGGGGAATAGGACGGGTAATTCGTCTTATGTGGGGGAGATGAATTTCGATGCGCACATGGTGGTAATAATGGCGGCCTTATTATGTGCACTCATTGGAGCCCTTGGAGTGAACTCTATCTGGCAGTGGACGGTGGACAGTGTTGCGCTGCAAATTGCAATGGCGTTAGGTCATCGGCGGTCATTCAAAATAACTGTTCATGCAAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTCCCTTCCAGGAAATTTCAAGGCCTCCTAAAGCTTGATAAACTACTCATCGGAGTGGATTCCAAATCTGAATCTCGGATCCTCGTTCAACGCCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAGGCATTTGGGGCGTCGGGGATCTAAAATGCCCCAATACTCATACCTACTTGCTGAATCTGAAAATCAATCTTGGCATGTTGGCCGTCTGGAACTAAGGTTTGTGGCTGCTTTTGGTGTTGGATTGGCTTATCTTCTTGCACTCAACACACAGATTGGCCTTGGCAATGCCATCCATCCCACCTTCACTTCCTTTATTTGGGTTTGCTTGCTTTTATTTGTTTTATGGCTCCACAAATGTAAGTGCCTTTCGGCAATGCTATTGCTAATCGTTCTGCTTCCTCTCTTACTCTTACCATTCCATACATTTGTACATCTTTTACATTTACGCCACTTTTTATAA

Protein sequence

METEVVQGNRTGNSSYVGEMNFDAHMVVIMAALLCALIGALGVNSIWQWTVDSVALQIAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRLELRFVAAFGVGLAYLLALNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKCKCLSAMLLLIVLLPLLLLPFHTFVHLLHLRHFL

Homology

[Close]

BLAST of HG10020464 vs. NCBI nr
Match: XP_038906422.1 (uncharacterized protein LOC120092221 [Benincasa hispida])

HSP 1 Score: 253.1 bits (645), Expect = 2.5e-63
Identity = 152/201 (75.62%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 49  WTVDSVALQIAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVD 108
           W  D+    +AMALG RRSFKITVHAKICNLYIKLKATLK PS K Q LLKLDKLLIG D
Sbjct: 32  WVCDACGC-VAMALGFRRSFKITVHAKICNLYIKLKATLKPPSGKLQRLLKLDKLLIGAD 91

Query: 109 SKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRLELRFVA 168
           SKSES ILVQRRRTLKSRMLSFVK+HLG   SKMP      AESENQSW VGR+ELR VA
Sbjct: 92  SKSESWILVQRRRTLKSRMLSFVKKHLGCGRSKMPH-----AESENQSWDVGRMELRCVA 151

Query: 169 AFGVGLAYLLALNTQIGLGNAIHPTFTSFIWV--CLLLFVLWLHKCKCLS--AMLLLIVL 228
            FGVGL YLLALNT IGL NAIHP+F+S IWV  CLLLFVLWLHKCK L   A+L LI L
Sbjct: 152 FFGVGLGYLLALNTHIGLTNAIHPSFSSTIWVCLCLLLFVLWLHKCKYLYLWAILFLIAL 211

Query: 229 LPLLLLPFHTFVHLLHLRHFL 246
           LPL LL    FVHLLHLRHFL
Sbjct: 212 LPLFLLQLDKFVHLLHLRHFL 226

[Close]

BLAST of HG10020464 vs. NCBI nr
Match: KAE8650972.1 (hypothetical protein Csa_002588 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 5.4e-58
Identity = 140/189 (74.07%), Postives = 151/189 (79.89%), Query Frame = 0


Query: 58  IAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILV 117
           +AMA+GHRRSFKI+V AKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKS SRIL+
Sbjct: 1   MAMAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILL 60

Query: 118 QRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRLELRFVAAFGVGLAY- 177
           QRRRTLKSRMLSFVK+HLG R SK P      AES  +SWHVG LE R VAAFGVGL Y 
Sbjct: 61  QRRRTLKSRMLSFVKKHLGHRRSKFPH-----AESRYRSWHVGLLERRCVAAFGVGLGYV 120

Query: 178 LLALNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKCKCLSAMLLLIVLLPLLLLPFHTFV 237
           ++AL TQI L NAI P+F+S IWV L +FVLWL KCK L AMLLLI L PLLL    TFV
Sbjct: 121 VVALKTQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFV 180

Query: 238 HLLHLRHFL 246
           HLLHLR FL
Sbjct: 181 HLLHLRQFL 184

[Close]

BLAST of HG10020464 vs. NCBI nr
Match: XP_008442323.1 (PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 3.3e-55
Identity = 130/185 (70.27%), Postives = 145/185 (78.38%), Query Frame = 0


Query: 60  MALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQR 119
           MA+GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKSESR+LVQR
Sbjct: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60

Query: 120 RRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRLELRFVAAFGVGLAYLLA 179
           RRTLKSRMLSFVK+HLGR  SK+P      +ES+ QSWHVG          GVG  YL+A
Sbjct: 61  RRTLKSRMLSFVKKHLGRCRSKIPH-----SESKYQSWHVGH-------QIGVGFGYLVA 120

Query: 180 LNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKCKCLSAMLLLIVLLPLLLLPFHTFVHLL 239
           L TQIGL NA+  +F+S IWV L +FV+WL KCK L A+LLL+ L PLLL    TFVHLL
Sbjct: 121 LKTQIGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLL 173

Query: 240 HLRHF 245
           HLRHF
Sbjct: 181 HLRHF 173

[Close]

BLAST of HG10020464 vs. NCBI nr
Match: KAA0044224.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-39
Identity = 99/141 (70.21%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 51  VDSVALQ-IAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDS 110
           +DS A+  +AMA+GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDS
Sbjct: 160 IDSRAVSCVAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDS 219

Query: 111 KSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRLELRFVAA 170
           KSESR+LVQRRRTLKSRMLSFVK+HLGR  SK+P      +ES+ Q WHVG         
Sbjct: 220 KSESRVLVQRRRTLKSRMLSFVKKHLGRCRSKIPH-----SESKYQYWHVGH-------Q 279

Query: 171 FGVGLAYLLALNTQIGLGNAI 191
            GVG  YL+AL TQIGL NA+
Sbjct: 280 IGVGFGYLVALKTQIGLANAV 288

[Close]

BLAST of HG10020464 vs. NCBI nr
Match: KAA0044224.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-05
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 7  QGNRTGN-SSYVGEMNFDAHMVVIMAALLCALIGALGVNSI 47
          QGNRT N S+YVGE+NFD HM + +AALLC LIGA+GVNSI
Sbjct: 13 QGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSI 53

HSP 2 Score: 169.9 bits (429), Expect = 2.8e-38
Identity = 110/196 (56.12%), Postives = 135/196 (68.88%), Query Frame = 0


Query: 60  MALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQR 119
           MALGHRRS+KITVHAK+ +LYIK KAT+K PS KF+ LL LDKLL+G+DSKSESRILVQ+
Sbjct: 1   MALGHRRSWKITVHAKVNDLYIKFKATVKRPSGKFRSLLNLDKLLVGLDSKSESRILVQQ 60

Query: 120 RRTLKSRMLSFVKRHLGRR------GSKMPQYSYLLAESENQSWHVGRLELRFVAAFGVG 179
            RTLKSR++SFVK+H  RR      G KMP   YL+ E+E QSW +GR E    A FGVG
Sbjct: 61  HRTLKSRIISFVKKHFRRRRSKTGVGFKMPD-PYLVDETEYQSWRLGRAESSCAAVFGVG 120

Query: 180 LAYLLALNTQIGLGNAIH-----PTFTSFIWVCLLLFVLWLHKCKCLSAMLLLIVLLPLL 239
           L YLLA   + G   A+      P+ +SF+ VC++LFVL  HK K L AML+ +  L LL
Sbjct: 121 LGYLLA---EFGASAAVKRVGIIPSLSSFLLVCVVLFVLLFHKSKFLWAMLMAV--LSLL 180

Query: 240 LLPFHTFVHLLHLRHF 245
           LL    F+ L+ L  F
Sbjct: 181 LLEIDRFLELIDLEQF 190

[Close]

BLAST of HG10020464 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.5e-05
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 8  GNRT----GNSSYVGEMNFDAHMVVIMAALLCALIGALGVNSI 47
          GN T    G   Y  +MNFDA+MV+I+AALLCALI ALG+NSI
Sbjct: 12 GNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSI 54

[Close]

BLAST of HG10020464 vs. ExPASy TrEMBL
Match: A0A1S3B4Y8 (uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 130/185 (70.27%), Postives = 145/185 (78.38%), Query Frame = 0


Query: 60  MALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQR 119
           MA+GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKSESR+LVQR
Sbjct: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60

Query: 120 RRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRLELRFVAAFGVGLAYLLA 179
           RRTLKSRMLSFVK+HLGR  SK+P      +ES+ QSWHVG          GVG  YL+A
Sbjct: 61  RRTLKSRMLSFVKKHLGRCRSKIPH-----SESKYQSWHVGH-------QIGVGFGYLVA 120

Query: 180 LNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKCKCLSAMLLLIVLLPLLLLPFHTFVHLL 239
           L TQIGL NA+  +F+S IWV L +FV+WL KCK L A+LLL+ L PLLL    TFVHLL
Sbjct: 121 LKTQIGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLL 173

Query: 240 HLRHF 245
           HLRHF
Sbjct: 181 HLRHF 173

[Close]

BLAST of HG10020464 vs. ExPASy TrEMBL
Match: A0A0A0LCL9 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 9.7e-45
Identity = 108/144 (75.00%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 60  MALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQR 119
           MA+GHRRSFKI+V AKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKS SRIL+QR
Sbjct: 1   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 60

Query: 120 RRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRLELRFVAAFGVGLAY-LL 179
           RRTLKSRMLSFVK+HLG R SK P      AES  +SWHVG LE R VAAFGVGL Y ++
Sbjct: 61  RRTLKSRMLSFVKKHLGHRRSKFPH-----AESRYRSWHVGLLERRCVAAFGVGLGYVVV 120

Query: 180 ALNTQIGLGNAIHPTFTSFIWVCL 203
           AL TQI L NAI P+F+S IWV L
Sbjct: 121 ALKTQIELANAIGPSFSSIIWVYL 139

[Close]

BLAST of HG10020464 vs. ExPASy TrEMBL
Match: A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 5.5e-40
Identity = 99/141 (70.21%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 51  VDSVALQ-IAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDS 110
           +DS A+  +AMA+GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDS
Sbjct: 160 IDSRAVSCVAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDS 219

Query: 111 KSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRLELRFVAA 170
           KSESR+LVQRRRTLKSRMLSFVK+HLGR  SK+P      +ES+ Q WHVG         
Sbjct: 220 KSESRVLVQRRRTLKSRMLSFVKKHLGRCRSKIPH-----SESKYQYWHVGH-------Q 279

Query: 171 FGVGLAYLLALNTQIGLGNAI 191
            GVG  YL+AL TQIGL NA+
Sbjct: 280 IGVGFGYLVALKTQIGLANAV 288

[Close]

BLAST of HG10020464 vs. ExPASy TrEMBL
Match: A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.9e-06
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 7  QGNRTGN-SSYVGEMNFDAHMVVIMAALLCALIGALGVNSI 47
          QGNRT N S+YVGE+NFD HM + +AALLC LIGA+GVNSI
Sbjct: 13 QGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSI 53

HSP 2 Score: 168.3 bits (425), Expect = 4.0e-38
Identity = 94/129 (72.87%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 63  GHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRT 122
           GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKSESR+LVQRRRT
Sbjct: 7   GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 66

Query: 123 LKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRLELRFVAAFGVGLAYLLALNT 182
           LKSRMLSFVK+HLGR  SK+P      +ES+ QSWHVG          GVG  YL+AL T
Sbjct: 67  LKSRMLSFVKKHLGRCRSKIPH-----SESKYQSWHVGH-------QIGVGFGYLVALKT 123

Query: 183 QIGLGNAIH 192
           QIGL NA +
Sbjct: 127 QIGLANACY 123

[Close]

BLAST of HG10020464 vs. ExPASy TrEMBL
Match: A0A6J1I6E6 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-08
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  METEVVQGNRTGNSS-YVGEMNFDAHMVVIMAALLCALIGALGVNSI 47
          + TE VQGN T NSS YVGEMN DAHMVVI+AALL ALIGALGVN++
Sbjct: 10 LATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNAL 56

[Close]

BLAST of HG10020464 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-06
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 8  GNRT----GNSSYVGEMNFDAHMVVIMAALLCALIGALGVNSI 47
          GN T    G   Y  +MNFDA+MV+I+AALLCALI ALG+NSI
Sbjct: 12 GNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSI 54

[Close]

BLAST of HG10020464 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.7e-04
Identity = 19/33 (57.58%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 14 SSYVGEMNFDAHMVVIMAALLCALIGALGVNSI 47
          S YVG+ NFDA++V++++ LLCAL+ +LG+NSI
Sbjct: 44 SPYVGDNNFDANVVMVLSVLLCALVCSLGLNSI 76

[Close]

BLAST of HG10020464 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 4.8e-04
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 8  GNRTGNSSYVGEMNFDAHMVVIMAALLCALIGALGVNSI 47
          G+   N+  +  M  D HMV+I+AALLCALI ALG+NS+
Sbjct: 25 GDSVSNNKNIASM--DTHMVIILAALLCALICALGINSV 61

The following BLAST results are available for this feature:

BLAST of HG10020464 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906422.1	2.5e-63	75.62	uncharacterized protein LOC120092221 [Benincasa hispida]	[more]
KAE8650972.1	5.4e-58	74.07	hypothetical protein Csa_002588 [Cucumis sativus]	[more]
XP_008442323.1	3.3e-55	70.27	PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo]	[more]
KAA0044224.1	1.1e-39	70.21	RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa]	[more]
KAA0044224.1	1.8e-05	73.17	RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa]	[more]

BLAST of HG10020464 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	2.5e-05	62.79	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]

BLAST of HG10020464 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4Y8	1.6e-55	70.27	uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=...	[more]
A0A0A0LCL9	9.7e-45	75.00	50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1	[more]
A0A5A7TM08	5.5e-40	70.21	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TM08	8.9e-06	73.17	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1I6E6	7.3e-08	76.60	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE...	[more]

BLAST of HG10020464 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	1.8e-06	62.79	RING/U-box superfamily protein	[more]
AT1G49230.1	1.7e-04	57.58	RING/U-box superfamily protein	[more]
AT5G05280.1	4.8e-04	53.85	RING/U-box superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020464.1	HG10020464.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome