Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCTCCAACTAAAGCTTCTGCACTTCAGACTTTCGAAAAGTATATTGCATCCCCTGTTTTACCGGCGACAAAGAAAAAACACTCATATCTACTAAAACCTTTTCCAAGACATTTTGTAAGGAAGATGACCTCCTTCATTAATTCTTGGTCTGCACTCACGAATCCTGATTTGCTGGAAGATTGTTGCGTTCGAGCCCAATTGCCGGAAGCTTCCTCCAAACGGCCTGTTAAATCTACTCAACAGTTTCATCAGTCGGTCTTTAAAATTCCAAGGTTCAATGTGCAATTTGTTAGAGGTGTTCCATGTGACAATTCAAATTCTCCCCTCTCTAGACAGCATGGCTTCGATTGCGAATCAATAGTGAGCATTAGTAGTGAAGACATTGATTGCTATGAGACAGAGGTAGATAAGGAAGAAGCAGAATTTGTGGACAACTTTGGCAAAGAATGCGATTTATTTCAGGAAGAAATCAACGCAGGAATTGGTAAAGATGGAACTAAAGAAGTACACCTCAATGAGGATGTAATTGAAGATGTTGCAGCACTTTTCCAAAATTCGGCCAAGAAAAGCTCAAATCAAAAGACTTGCTCTCTGCAATTTCAACTATCTCCTTCCCAAATCTCTTCTAAATTTTCCTCCTTGATTGAAGATTGTGGTTTGATTTTTGAGTAAGTTTTTTTTATTGTCATAAGGCTTCCCGTAAGTTGGTTGGTGCTCTCCTCCTCTCGTGATTGTCCATTGTTTTGGCTGGAGTTGTAAGGTTGTATCAGGATTTTGGCTGGCTCAGTCCTTGGAGAGGTCCTTATGTCAGCAGCTTATATGTCATTCTAATTAGGGGATCAGCTTCAAGCATCTTACGCTCTCAAAGTTCTTTGTCATTCAAGCTTCAAACCTCATTCTAATTGGGTGTTTTGTATCTTATTTTAGCTTCTTATGCCTCTTATGATTAGTGTCTTATATTGTTCTGCAATCTACCCATTGTACTTTTTTTCTGTATTTGCTTATTTGTACTAAGAGCTTTTGGCTCATTTCATTATATCAACAAAATAGTATTGTTTTCGTTTAAAAAAAAAAACCTTTGTAACTACCAAAAATTTTTGCTTGTTTATTGTCTTCACAACACATAATGGCCTTGTTGGGTTGGAAGGGAGCCAAGGAGCAATATGCAGAAACATCAACTTTGAGGGCTCTAATGATTTTGTACCGCTCATCATGGAAGTTCTTCCGTCTAATCACAATAATGTTGCTGGTAGAGAAAGGAACCAAGGCAGTTGTGGGCTCTGCGATTGTTTGGCTCTCATTGATGTTGGGTGGTTGATCAATTAA
mRNA sequence
ATGAAATCTCCAACTAAAGCTTCTGCACTTCAGACTTTCGAAAAGTATATTGCATCCCCTGTTTTACCGGCGACAAAGAAAAAACACTCATATCTACTAAAACCTTTTCCAAGACATTTTGTAAGGAAGATGACCTCCTTCATTAATTCTTGGTCTGCACTCACGAATCCTGATTTGCTGGAAGATTGTTGCGTTCGAGCCCAATTGCCGGAAGCTTCCTCCAAACGGCCTGTTAAATCTACTCAACAGTTTCATCAGTCGGTCTTTAAAATTCCAAGGTTCAATGTGCAATTTGTTAGAGGTGTTCCATGTGACAATTCAAATTCTCCCCTCTCTAGACAGCATGGCTTCGATTGCGAATCAATAGTGAGCATTAGTAGTGAAGACATTGATTGCTATGAGACAGAGGTAGATAAGGAAGAAGCAGAATTTGTGGACAACTTTGGCAAAGAATGCGATTTATTTCAGGAAGAAATCAACGCAGGAATTGGGAGCCAAGGAGCAATATGCAGAAACATCAACTTTGAGGGCTCTAATGATTTTGTACCGCTCATCATGGAAGTTCTTCCGTCTAATCACAATAATGTTGCTGGTAGAGAAAGGAACCAAGGCAGTTGTGGGCTCTGCGATTGTTTGGCTCTCATTGATGTTGGGTGGTTGATCAATTAA
Coding sequence (CDS)
ATGAAATCTCCAACTAAAGCTTCTGCACTTCAGACTTTCGAAAAGTATATTGCATCCCCTGTTTTACCGGCGACAAAGAAAAAACACTCATATCTACTAAAACCTTTTCCAAGACATTTTGTAAGGAAGATGACCTCCTTCATTAATTCTTGGTCTGCACTCACGAATCCTGATTTGCTGGAAGATTGTTGCGTTCGAGCCCAATTGCCGGAAGCTTCCTCCAAACGGCCTGTTAAATCTACTCAACAGTTTCATCAGTCGGTCTTTAAAATTCCAAGGTTCAATGTGCAATTTGTTAGAGGTGTTCCATGTGACAATTCAAATTCTCCCCTCTCTAGACAGCATGGCTTCGATTGCGAATCAATAGTGAGCATTAGTAGTGAAGACATTGATTGCTATGAGACAGAGGTAGATAAGGAAGAAGCAGAATTTGTGGACAACTTTGGCAAAGAATGCGATTTATTTCAGGAAGAAATCAACGCAGGAATTGGGAGCCAAGGAGCAATATGCAGAAACATCAACTTTGAGGGCTCTAATGATTTTGTACCGCTCATCATGGAAGTTCTTCCGTCTAATCACAATAATGTTGCTGGTAGAGAAAGGAACCAAGGCAGTTGTGGGCTCTGCGATTGTTTGGCTCTCATTGATGTTGGGTGGTTGATCAATTAA
Protein sequence
MKSPTKASALQTFEKYIASPVLPATKKKHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEASSKRPVKSTQQFHQSVFKIPRFNVQFVRGVPCDNSNSPLSRQHGFDCESIVSISSEDIDCYETEVDKEEAEFVDNFGKECDLFQEEINAGIGSQGAICRNINFEGSNDFVPLIMEVLPSNHNNVAGRERNQGSCGLCDCLALIDVGWLIN
Homology
BLAST of HG10019480 vs. NCBI nr
Match:
XP_038887514.1 (RNA-binding protein 39-like isoform X1 [Benincasa hispida])
HSP 1 Score: 77.0 bits (188), Expect = 2.2e-10
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0
Query: 27 KKHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEASSKRPVK 80
KKHS LLKPFP HF+RK TSF NSW+ L N DLLE+CCV+ Q+P+ R V+
Sbjct: 294 KKHSRLLKPFPEHFIRKKTSFFNSWTTLANSDLLEECCVKVQIPDFFPNRYVE 346
BLAST of HG10019480 vs. NCBI nr
Match:
KAA0057401.1 (hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK30100.1 hypothetical protein E5676_scaffold216G00800 [Cucumis melo var. makuwa])
HSP 1 Score: 73.6 bits (179), Expect = 2.5e-09
Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 0
Query: 14 EKYIASPVLPATKKKHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEAS 73
+K + S +P K++ L KPF + F RK TSF NSW+ +TNPDLLE+ CV+ Q+P
Sbjct: 176 DKKLKSSKVP---KRNYPLFKPFRKQFSRKRTSFNNSWTKITNPDLLEEGCVKLQVPGIV 235
Query: 74 SKRPV---KSTQQFHQSVFKIPRFNVQFVRG--VPCDNSNSPLSRQHGFDCESIVSISSE 133
+ V S + S +V VRG +P D+ ES+VS+SSE
Sbjct: 236 QNKSVISSSSLNHINHSSGSSQAHHVSLVRGTRIPLDSEE-----------ESVVSVSSE 295
Query: 134 DIDCYETEVDKEEAEFVDNFGKECD-LFQEE 159
D++ E + K EF ++ K LFQ E
Sbjct: 296 DLERDEDDEIKTSEEFHEDMNKALGLLFQPE 312
BLAST of HG10019480 vs. NCBI nr
Match:
XP_038876689.1 (uncharacterized protein LOC120069082 isoform X1 [Benincasa hispida] >XP_038876690.1 uncharacterized protein LOC120069082 isoform X1 [Benincasa hispida])
HSP 1 Score: 70.9 bits (172), Expect = 1.6e-08
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 0
Query: 28 KHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEASSKR-------PVKS 87
+ S+LLKPFP++F R+ +S + +WS L N +LLEDCC R Q+P ++R P +
Sbjct: 172 RSSHLLKPFPKYFERRKSSIVKTWSLLANSNLLEDCCARVQIPIDKAERSVIPPNFPSST 231
Query: 88 TQQFHQSVFKIPRFNVQFVRGVPCDNSNSPLSRQHGFDCESIVSISSEDID 132
T Q +++ + +V+G P S Q +D SI S+SSED+D
Sbjct: 232 TPQLGKNL----DLSFIYVQGSPISVFGSKKLPQE-YDEASIASVSSEDLD 277
BLAST of HG10019480 vs. NCBI nr
Match:
KAA0062445.1 (putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 63.2 bits (152), Expect = 3.4e-06
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0
Query: 42 RKMTSFINSWSALTNPDLLEDCCVRAQLP----EASSKRPVKSTQQFHQSVFKIPRFNVQ 101
+K TSF NSW+ TNPDLLE CCV+ Q+P +S+ P + H FN
Sbjct: 100 KKRTSFNNSWTKFTNPDLLEACCVKIQVPGLNQNSSASLPFLNKPCSHSGCNSQESFNPS 159
Query: 102 FVRGVPCDNSNSPLSRQHGFDCESIVSISSEDID 132
V+G+ C + F+ ES+ S+SSE+++
Sbjct: 160 SVQGLHCTFQTTSHKGSKDFNEESLASLSSEELE 193
BLAST of HG10019480 vs. NCBI nr
Match:
TYK27438.1 (putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 62.4 bits (150), Expect = 5.7e-06
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 0
Query: 43 KMTSFINSWSALTNPDLLEDCCVRAQLP----EASSKRPVKSTQQFHQSVFKIPRFNVQF 102
K TSF NSW+ TNPDLLE CCV+ Q+P +S+ P + H FN
Sbjct: 126 KRTSFNNSWTKFTNPDLLEACCVKIQVPGLNQNSSASLPFLNKPCSHSGCNSQESFNPSS 185
Query: 103 VRGVPCDNSNSPLSRQHGFDCESIVSISSEDID 132
V+G+ C + F+ ES+ S+SSE+++
Sbjct: 186 VQGLHCTFQTTSHKGSKDFNEESLASLSSEELE 218
BLAST of HG10019480 vs. ExPASy TrEMBL
Match:
A0A5A7UV76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00800 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 0
Query: 14 EKYIASPVLPATKKKHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEAS 73
+K + S +P K++ L KPF + F RK TSF NSW+ +TNPDLLE+ CV+ Q+P
Sbjct: 176 DKKLKSSKVP---KRNYPLFKPFRKQFSRKRTSFNNSWTKITNPDLLEEGCVKLQVPGIV 235
Query: 74 SKRPV---KSTQQFHQSVFKIPRFNVQFVRG--VPCDNSNSPLSRQHGFDCESIVSISSE 133
+ V S + S +V VRG +P D+ ES+VS+SSE
Sbjct: 236 QNKSVISSSSLNHINHSSGSSQAHHVSLVRGTRIPLDSEE-----------ESVVSVSSE 295
Query: 134 DIDCYETEVDKEEAEFVDNFGKECD-LFQEE 159
D++ E + K EF ++ K LFQ E
Sbjct: 296 DLERDEDDEIKTSEEFHEDMNKALGLLFQPE 312
BLAST of HG10019480 vs. ExPASy TrEMBL
Match:
A0A5A7V992 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00230 PE=4 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0
Query: 42 RKMTSFINSWSALTNPDLLEDCCVRAQLP----EASSKRPVKSTQQFHQSVFKIPRFNVQ 101
+K TSF NSW+ TNPDLLE CCV+ Q+P +S+ P + H FN
Sbjct: 100 KKRTSFNNSWTKFTNPDLLEACCVKIQVPGLNQNSSASLPFLNKPCSHSGCNSQESFNPS 159
Query: 102 FVRGVPCDNSNSPLSRQHGFDCESIVSISSEDID 132
V+G+ C + F+ ES+ S+SSE+++
Sbjct: 160 SVQGLHCTFQTTSHKGSKDFNEESLASLSSEELE 193
BLAST of HG10019480 vs. ExPASy TrEMBL
Match:
A0A5D3DVC2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001350 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 0
Query: 43 KMTSFINSWSALTNPDLLEDCCVRAQLP----EASSKRPVKSTQQFHQSVFKIPRFNVQF 102
K TSF NSW+ TNPDLLE CCV+ Q+P +S+ P + H FN
Sbjct: 126 KRTSFNNSWTKFTNPDLLEACCVKIQVPGLNQNSSASLPFLNKPCSHSGCNSQESFNPSS 185
Query: 103 VRGVPCDNSNSPLSRQHGFDCESIVSISSEDID 132
V+G+ C + F+ ES+ S+SSE+++
Sbjct: 186 VQGLHCTFQTTSHKGSKDFNEESLASLSSEELE 218
BLAST of HG10019480 vs. ExPASy TrEMBL
Match:
A0A0A0KHK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408260 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 6.8e-05
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query: 27 KKHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEASSKR 77
++ S L K F +HF RK TSF NSW+ +TNPD+LE CV+ Q+P R
Sbjct: 127 QRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNR 176
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038887514.1 | 2.2e-10 | 62.26 | RNA-binding protein 39-like isoform X1 [Benincasa hispida] | [more] |
| KAA0057401.1 | 2.5e-09 | 35.76 | hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK301... | [more] |
| XP_038876689.1 | 1.6e-08 | 36.94 | uncharacterized protein LOC120069082 isoform X1 [Benincasa hispida] >XP_03887669... | [more] |
| KAA0062445.1 | 3.4e-06 | 36.17 | putative mitochondrial protein [Cucumis melo var. makuwa] | [more] |
| TYK27438.1 | 5.7e-06 | 36.56 | putative mitochondrial protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UV76 | 1.2e-09 | 35.76 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7V992 | 1.6e-06 | 36.17 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
| A0A5D3DVC2 | 2.8e-06 | 36.56 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A0A0KHK4 | 6.8e-05 | 50.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408260 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
