HG10019330 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019330
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Calvin cycle protein CP12-2
Location	Chr04: 20473660 .. 20473842 (-)
RNA-Seq Expression	HG10019330
Synteny	HG10019330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGGAGGCTTGTGCAGGGGACCCGGTTGAGCGGCGAGTGCGCTGCAGCGGGGGACGAAGTTGAGGAATTGAGCGCAGCGGCGAGCCATGCTCGTGACAAGAAGAAGGAGTCAGACCCATTGGAGAACTATTGCAAGGACAACCCAGAGACTGAGGAATGTCGCACCTATGACAATTGA

mRNA sequence

ATGCAGAGGAGGCTTGTGCAGGGGACCCGGTTGAGCGGCGAGTGCGCTGCAGCGGGGGACGAAGTTGAGGAATTGAGCGCAGCGGCGAGCCATGCTCGTGACAAGAAGAAGGAGTCAGACCCATTGGAGAACTATTGCAAGGACAACCCAGAGACTGAGGAATGTCGCACCTATGACAATTGA

Coding sequence (CDS)

ATGCAGAGGAGGCTTGTGCAGGGGACCCGGTTGAGCGGCGAGTGCGCTGCAGCGGGGGACGAAGTTGAGGAATTGAGCGCAGCGGCGAGCCATGCTCGTGACAAGAAGAAGGAGTCAGACCCATTGGAGAACTATTGCAAGGACAACCCAGAGACTGAGGAATGTCGCACCTATGACAATTGA

Protein sequence

MQRRLVQGTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN

Homology

[Close]

BLAST of HG10019330 vs. NCBI nr
Match: XP_022155326.1 (calvin cycle protein CP12-2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 3.3e-17
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 61
           G  +SGECAAA DEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN
Sbjct: 76  GDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 128

[Close]

BLAST of HG10019330 vs. NCBI nr
Match: XP_038903303.1 (calvin cycle protein CP12-1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 7.4e-17
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 61
           G  +SGECAAA DEVEELSAAASHARD+KKESDPLENYCKDNPETEECRTYDN
Sbjct: 98  GDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPETEECRTYDN 150

[Close]

BLAST of HG10019330 vs. NCBI nr
Match: XP_008454293.1 (PREDICTED: calvin cycle protein CP12-2, chloroplastic [Cucumis melo] >KAA0044414.1 calvin cycle protein CP12-2 [Cucumis melo var. makuwa] >TYK29541.1 calvin cycle protein CP12-2 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 7.4e-17
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 61
           G  +SGECAAA DEVEELSAAASHARD+KKESDPLENYCKDNPETEECRTYDN
Sbjct: 76  GDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPETEECRTYDN 128

[Close]

BLAST of HG10019330 vs. NCBI nr
Match: XP_022934393.1 (calvin cycle protein CP12-2, chloroplastic-like [Cucurbita moschata] >XP_022984077.1 calvin cycle protein CP12-2, chloroplastic-like [Cucurbita maxima] >KAG6581299.1 Calvin cycle protein CP12-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018019.1 Calvin cycle protein CP12-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 61
           G  +SGECAAA DEVEELSAAASHARDKKKESDPLE YCKDNPETEECRTYDN
Sbjct: 76  GDPVSGECAAAWDEVEELSAAASHARDKKKESDPLETYCKDNPETEECRTYDN 128

[Close]

BLAST of HG10019330 vs. NCBI nr
Match: XP_004152225.1 (calvin cycle protein CP12-2, chloroplastic [Cucumis sativus] >KGN52853.1 hypothetical protein Csa_014965 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 61
           G  +SGECAAA DEVEELSAAASHARD+KKESDPLE+YCKDNPETEECRTYDN
Sbjct: 76  GDPVSGECAAAWDEVEELSAAASHARDRKKESDPLESYCKDNPETEECRTYDN 128

[Close]

BLAST of HG10019330 vs. ExPASy Swiss-Prot
Match: Q9LZP9 (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-2 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.8e-16
Identity = 45/55 (81.82%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKE--SDPLENYCKDNPETEECRTYDN 61
           G  +SGEC AA DEVEELSAAASHARDKKK   SDPLE YCKDNPET ECRTYDN
Sbjct: 77  GDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNECRTYDN 131

[Close]

BLAST of HG10019330 vs. ExPASy Swiss-Prot
Match: O22914 (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-15
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 11  LSGECAAAGDEVEELSAAASHARDKKKE--SDPLENYCKDNPETEECRTYDN 61
           +SGEC AA DEVEELSAAASHARDKKK   SDPLE YC DNPET+ECRTYDN
Sbjct: 73  VSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCNDNPETDECRTYDN 124

[Close]

BLAST of HG10019330 vs. ExPASy Swiss-Prot
Match: A6Q0K5 (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CP12 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-06
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 12  SGECAAAGDEVEELSAAASHARDKKKE----SDPLENYCKDNPETEECRTYDN 61
           S +CA A D VEELSAA SH +D  K     +DPLE +CKD P+ +ECR Y++
Sbjct: 55  SADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107

[Close]

BLAST of HG10019330 vs. ExPASy Swiss-Prot
Match: Q9C9K2 (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-3 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.7e-06
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 7   QGTRLSGECAAAGDEVEELSAAASHARDKKK--ESDPLENYCKDNPETEECRTYDN 61
           +   +S EC  A DEVEE+S A +  R K K    DPLE++C++NPET+ECR Y++
Sbjct: 79  EAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFCQENPETDECRIYED 134

[Close]

BLAST of HG10019330 vs. ExPASy TrEMBL
Match: A0A6J1DRE1 (calvin cycle protein CP12-2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111022459 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 61
           G  +SGECAAA DEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN
Sbjct: 76  GDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 128

[Close]

BLAST of HG10019330 vs. ExPASy TrEMBL
Match: A0A5D3E1R4 (Calvin cycle protein CP12-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001450 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.6e-17
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 61
           G  +SGECAAA DEVEELSAAASHARD+KKESDPLENYCKDNPETEECRTYDN
Sbjct: 76  GDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPETEECRTYDN 128

[Close]

BLAST of HG10019330 vs. ExPASy TrEMBL
Match: A0A1S3BZH5 (calvin cycle protein CP12-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494733 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.6e-17
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 61
           G  +SGECAAA DEVEELSAAASHARD+KKESDPLENYCKDNPETEECRTYDN
Sbjct: 76  GDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPETEECRTYDN 128

[Close]

BLAST of HG10019330 vs. ExPASy TrEMBL
Match: A0A6J1J155 (calvin cycle protein CP12-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482497 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.0e-17
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 61
           G  +SGECAAA DEVEELSAAASHARDKKKESDPLE YCKDNPETEECRTYDN
Sbjct: 76  GDPVSGECAAAWDEVEELSAAASHARDKKKESDPLETYCKDNPETEECRTYDN 128

[Close]

BLAST of HG10019330 vs. ExPASy TrEMBL
Match: A0A6J1F7J3 (calvin cycle protein CP12-2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441581 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.0e-17
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN 61
           G  +SGECAAA DEVEELSAAASHARDKKKESDPLE YCKDNPETEECRTYDN
Sbjct: 76  GDPVSGECAAAWDEVEELSAAASHARDKKKESDPLETYCKDNPETEECRTYDN 128

[Close]

BLAST of HG10019330 vs. TAIR 10
Match: AT3G62410.1 (CP12 domain-containing protein 2 )

HSP 1 Score: 84.7 bits (208), Expect = 2.7e-17
Identity = 45/55 (81.82%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 8   GTRLSGECAAAGDEVEELSAAASHARDKKKE--SDPLENYCKDNPETEECRTYDN 61
           G  +SGEC AA DEVEELSAAASHARDKKK   SDPLE YCKDNPET ECRTYDN
Sbjct: 77  GDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNECRTYDN 131

[Close]

BLAST of HG10019330 vs. TAIR 10
Match: AT2G47400.1 (CP12 domain-containing protein 1 )

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-16
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 11  LSGECAAAGDEVEELSAAASHARDKKKE--SDPLENYCKDNPETEECRTYDN 61
           +SGEC AA DEVEELSAAASHARDKKK   SDPLE YC DNPET+ECRTYDN
Sbjct: 73  VSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCNDNPETDECRTYDN 124

[Close]

BLAST of HG10019330 vs. TAIR 10
Match: AT1G76560.1 (CP12 domain-containing protein 3 )

HSP 1 Score: 51.2 bits (121), Expect = 3.3e-07
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 7   QGTRLSGECAAAGDEVEELSAAASHARDKKK--ESDPLENYCKDNPETEECRTYDN 61
           +   +S EC  A DEVEE+S A +  R K K    DPLE++C++NPET+ECR Y++
Sbjct: 79  EAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFCQENPETDECRIYED 134

The following BLAST results are available for this feature:

BLAST of HG10019330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155326.1	3.3e-17	92.45	calvin cycle protein CP12-2, chloroplastic-like [Momordica charantia]	[more]
XP_038903303.1	7.4e-17	90.57	calvin cycle protein CP12-1, chloroplastic-like [Benincasa hispida]	[more]
XP_008454293.1	7.4e-17	90.57	PREDICTED: calvin cycle protein CP12-2, chloroplastic [Cucumis melo] >KAA0044414...	[more]
XP_022934393.1	1.6e-16	90.57	calvin cycle protein CP12-2, chloroplastic-like [Cucurbita moschata] >XP_0229840...	[more]
XP_004152225.1	2.8e-16	88.68	calvin cycle protein CP12-2, chloroplastic [Cucumis sativus] >KGN52853.1 hypothe...	[more]

BLAST of HG10019330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZP9	3.8e-16	81.82	Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
O22914	1.9e-15	82.69	Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
A6Q0K5	1.6e-06	52.83	Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN...	[more]
Q9C9K2	4.7e-06	48.21	Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]

BLAST of HG10019330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRE1	1.6e-17	92.45	calvin cycle protein CP12-2, chloroplastic-like OS=Momordica charantia OX=3673 G...	[more]
A0A5D3E1R4	3.6e-17	90.57	Calvin cycle protein CP12-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BZH5	3.6e-17	90.57	calvin cycle protein CP12-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034947...	[more]
A0A6J1J155	8.0e-17	90.57	calvin cycle protein CP12-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F7J3	8.0e-17	90.57	calvin cycle protein CP12-2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of HG10019330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62410.1	2.7e-17	81.82	CP12 domain-containing protein 2	[more]
AT2G47400.1	1.3e-16	82.69	CP12 domain-containing protein 1	[more]
AT1G76560.1	3.3e-07	48.21	CP12 domain-containing protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003823	Domain of unknown function CP12	SMART	SM01093	CP12_2	coord: 4..60 e-value: 2.5E-15 score: 66.9
IPR003823	Domain of unknown function CP12	PFAM	PF02672	CP12	coord: 11..59 e-value: 1.4E-22 score: 80.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..60
None	No IPR available	PANTHER	PTHR33921:SF20	OS01G0303000 PROTEIN	coord: 9..60
IPR039314	Calvin cycle protein CP12-like	PANTHER	PTHR33921	CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC	coord: 9..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019330.1	HG10019330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080153	negative regulation of reductive pentose-phosphate cycle
cellular_component	GO:0009507	chloroplast