HG10019115 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019115
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L23
Location	Chr04: 17036290 .. 17036811 (-)
RNA-Seq Expression	HG10019115
Synteny	HG10019115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCAGATTACAAGAAGGCCTATGTTACTCTCAGGAATTCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAAAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTAGAATCCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGGCGGCGCTGAAACTGTTGAACCATCGACAAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

mRNA sequence

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCAGATTACAAGAAGGCCTATGTTACTCTCAGGAATTCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAAAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTAGAATCCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGGCGGCGCTGAAACTGTTGAACCATCGACAAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

Coding sequence (CDS)

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCAGATTACAAGAAGGCCTATGTTACTCTCAGGAATTCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAAAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTAGAATCCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGGCGGCGCTGAAACTGTTGAACCATCGACAAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

Protein sequence

MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR

Homology

[Close]

BLAST of HG10019115 vs. NCBI nr
Match: XP_022985025.1 (uncharacterized protein LOC111483116 [Cucurbita maxima])

HSP 1 Score: 325.1 bits (832), Expect = 3.7e-85
Identity = 166/173 (95.95%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPV  K YKGF+DR RRRTG AETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of HG10019115 vs. NCBI nr
Match: XP_023531609.1 (uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 hypothetical protein SDJN03_05887, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031291.1 rplW, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 166/173 (95.95%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKE V  KTYKGFADRGRRR GGAE VEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of HG10019115 vs. NCBI nr
Match: XP_023552749.1 (uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo] >XP_023552752.1 uncharacterized protein LOC111810293 [Cucurbita pepo subsp. pepo] >XP_023553074.1 uncharacterized protein LOC111810580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 163/173 (94.22%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSK SIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIV 120

Query: 121 EEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPVE K+YKGFA+RGRR+TG AET+EPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVEFKSYKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 173

[Close]

BLAST of HG10019115 vs. NCBI nr
Match: XP_038905477.1 (uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905478.1 uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905479.1 uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905480.1 uncharacterized protein LOC120091488 [Benincasa hispida])

HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 166/173 (95.95%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEEDK+NMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKKNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPV  KTYKGFADRGRR  GGAETVE STKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRLIGGAETVELSTKFPWSSMRSGR 173

[Close]

BLAST of HG10019115 vs. NCBI nr
Match: XP_004137193.1 (uncharacterized protein LOC101221365 [Cucumis sativus] >KGN53646.1 hypothetical protein Csa_014646 [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 5.3e-84
Identity = 165/174 (94.83%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRN LSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVESKTYKGFADRGRRRT-GGAETVEPSTKFPWSSMRSGR 174
           EEGEAK+HWLHEKEPV  KTYKGFADRGRRR+ GGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of HG10019115 vs. ExPASy Swiss-Prot
Match: Q605B4 (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=rplW PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.5e-07
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

Query: 90 NSLSI 95
              I
Sbjct: 88 PGFDI 92

[Close]

BLAST of HG10019115 vs. ExPASy Swiss-Prot
Match: Q0I161 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.1e-07
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNSLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]

BLAST of HG10019115 vs. ExPASy Swiss-Prot
Match: P55839 (50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans OX=714 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRN 90
          I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+ 
Sbjct: 29 IVFKVALDANKVEITNAVEQLFEVKVDSVRTVVVKGKTKRRGAKIGRRSDWKKAYVTLQE 88

Query: 91 SLSI 95
            S+
Sbjct: 89 GQSL 92

[Close]

BLAST of HG10019115 vs. ExPASy Swiss-Prot
Match: Q0ABH3 (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 89
          E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL 
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTLE 87

Query: 90 NSLSI 95
              I
Sbjct: 88 EGNEI 92

[Close]

BLAST of HG10019115 vs. ExPASy Swiss-Prot
Match: A0KF23 (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of HG10019115 vs. ExPASy TrEMBL
Match: A0A6J1JA70 (uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.8e-85
Identity = 166/173 (95.95%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPV  K YKGF+DR RRRTG AETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of HG10019115 vs. ExPASy TrEMBL
Match: A0A0A0L0J2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.6e-84
Identity = 165/174 (94.83%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRN LSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVESKTYKGFADRGRRRT-GGAETVEPSTKFPWSSMRSGR 174
           EEGEAK+HWLHEKEPV  KTYKGFADRGRRR+ GGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of HG10019115 vs. ExPASy TrEMBL
Match: A0A6J1EUM4 (uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC111436066 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.4e-84
Identity = 163/173 (94.22%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPV  K YKGF++R RRRTG AETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of HG10019115 vs. ExPASy TrEMBL
Match: A0A6J1FSK6 (uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC111448049 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.7e-84
Identity = 165/173 (95.38%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKE V  KTYKGFADRGRRR GGAE VEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of HG10019115 vs. ExPASy TrEMBL
Match: A0A5D3CZJ7 (Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00540 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 165/174 (94.83%), Postives = 168/174 (96.55%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 76  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 135

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRN LSIS D+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 136 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 195

Query: 121 EEGEAKRHWLHEKEPVESKTYKGFADRGRRRT-GGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPV  KTYKGFADRGRRR  GGAETVEPSTKFPWSSMRSGR
Sbjct: 196 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 249

[Close]

BLAST of HG10019115 vs. TAIR 10
Match: AT4G39880.1 (Ribosomal protein L23/L15e family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 115/175 (65.71%), Postives = 130/175 (74.29%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAK DYKKAYVTLR+ LSIS D++P++ IEED+++  K S S + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKRHWLHEKEPVESKTY-KGFADRGRRR----TGGAETVEPSTKFPWSSMR 171
           EE + K HWL  KE  E   Y KG   RG  R    T G      + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

The following BLAST results are available for this feature:

BLAST of HG10019115 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985025.1	3.7e-85	95.95	uncharacterized protein LOC111483116 [Cucurbita maxima]	[more]
XP_023531609.1	1.1e-84	95.95	uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 ...	[more]
XP_023552749.1	1.4e-84	94.22	uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo] >XP_023552752....	[more]
XP_038905477.1	3.1e-84	95.95	uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905478.1 unchara...	[more]
XP_004137193.1	5.3e-84	94.83	uncharacterized protein LOC101221365 [Cucumis sativus] >KGN53646.1 hypothetical ...	[more]

BLAST of HG10019115 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q605B4	5.5e-07	40.00	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
Q0I161	7.1e-07	42.47	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW...	[more]
P55839	1.6e-06	42.19	50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans OX=714 GN=rpl...	[more]
Q0ABH3	1.6e-06	43.08	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]
A0KF23	2.1e-06	45.76	50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC...	[more]

BLAST of HG10019115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JA70	1.8e-85	95.95	uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116...	[more]
A0A0A0L0J2	2.6e-84	94.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1	[more]
A0A6J1EUM4	4.4e-84	94.22	uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC1114360...	[more]
A0A6J1FSK6	5.7e-84	95.38	uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC1114480...	[more]
A0A5D3CZJ7	1.3e-83	94.83	Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of HG10019115 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39880.1	1.2e-52	65.71	Ribosomal protein L23/L15e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..141 e-value: 9.9E-24 score: 86.2
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 29..91 e-value: 9.9E-16 score: 57.9
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 5..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..173
None	No IPR available	PANTHER	PTHR12059:SF7	BNAC07G51330D PROTEIN	coord: 5..172
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 26..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019115.1	HG10019115.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:1903857	negative regulation of cytokinin dehydrogenase activity
biological_process	GO:1903070	negative regulation of ER-associated ubiquitin-dependent protein catabolic process
biological_process	GO:0010584	pollen exine formation
biological_process	GO:1902183	regulation of shoot apical meristem development
biological_process	GO:0015789	UDP-N-acetylgalactosamine transmembrane transport
biological_process	GO:1990569	UDP-N-acetylglucosamine transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005463	UDP-N-acetylgalactosamine transmembrane transporter activity