HG10017752 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017752
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Membrane-associated 30 kDa protein
Location	Chr03: 21100975 .. 21101205 (+)
RNA-Seq Expression	HG10017752
Synteny	HG10017752

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTCAAAAGATTAGTACCCTTTTGATCGTTTGTGTTGTATTTAGTATTGTCTTGAGTCATATAAATGTAGCTGATGCAGCACAGGTGCTCCTAAAGACTTCACGTGATCATGGTGTTGATTATGTTGATCCATATTCGATAGTTCATCACAAACCAGAGGAAACTGTCTCATGTTGTCTTGGAAAGTCTGGACCGAGTCCTCGTGGACCAGGTCACCAACACTAA

mRNA sequence

ATGAAGTTTCAAAAGATTAGTACCCTTTTGATCGTTTGTGTTGTATTTAGTATTGTCTTGAGTCATATAAATGTAGCTGATGCAGCACAGGTGCTCCTAAAGACTTCACGTGATCATGGTGTTGATTATGTTGATCCATATTCGATAGTTCATCACAAACCAGAGGAAACTGTCTCATGTTGTCTTGGAAAGTCTGGACCGAGTCCTCGTGGACCAGGTCACCAACACTAA

Coding sequence (CDS)

ATGAAGTTTCAAAAGATTAGTACCCTTTTGATCGTTTGTGTTGTATTTAGTATTGTCTTGAGTCATATAAATGTAGCTGATGCAGCACAGGTGCTCCTAAAGACTTCACGTGATCATGGTGTTGATTATGTTGATCCATATTCGATAGTTCATCACAAACCAGAGGAAACTGTCTCATGTTGTCTTGGAAAGTCTGGACCGAGTCCTCGTGGACCAGGTCACCAACACTAA

Protein sequence

MKFQKISTLLIVCVVFSIVLSHINVADAAQVLLKTSRDHGVDYVDPYSIVHHKPEETVSCCLGKSGPSPRGPGHQH

Homology

[Close]

BLAST of HG10017752 vs. NCBI nr
Match: KAG7018440.1 (hypothetical protein SDJN02_20308, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLLKTSRDHGVDYVDPYSIVHHKPEETVSC 60
          MKFQKI +  IVCVVF I+LS I+  DAA+VL +TS +HGVDY+DPYSIV+ K +ETVSC
Sbjct: 11 MKFQKIRSFFIVCVVFGIILSQISTIDAARVLSETS-NHGVDYIDPYSIVYQKAKETVSC 70

Query: 61 CLGK--SGPSPRGPGH 75
           LGK  SGPSP GPGH
Sbjct: 71 WLGKLSSGPSPSGPGH 85

[Close]

BLAST of HG10017752 vs. NCBI nr
Match: KGN53025.1 (hypothetical protein Csa_015299 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-17
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLL----KTSRDHGVDY-VDPYSIVHHKPE 60
          MKFQKI+TLLIVCV+  +VLS INVADAA++LL    +   DHGVDY +DPYSIV+ K +
Sbjct: 2  MKFQKITTLLIVCVLVGVVLSQINVADAARILLSETPRDDHDHGVDYHIDPYSIVYQKAK 61

Query: 61 ETVSCCLGK--SGPSPRGPGH 75
          E++SC LGK  SGPSP GPGH
Sbjct: 62 ESISCWLGKLSSGPSPSGPGH 82

[Close]

BLAST of HG10017752 vs. NCBI nr
Match: KAA0043548.1 (hypothetical protein E6C27_scaffold335G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLLKTSR-DHGVDYVDPYSIVHHKPEETVS 60
          MKFQKI+ LLI+CVVF IV SHI   DAA++L +T R DH VD +D YSI HHK +++V 
Sbjct: 1  MKFQKIAALLIICVVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CCLG--KSGPSPRGPGH 75
          C L   +SGPSP+GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of HG10017752 vs. NCBI nr
Match: TYK02483.1 (hypothetical protein E5676_scaffold784G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.0e-14
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLLKTSR-DHGVDYVDPYSIVHHKPEETVS 60
          MKFQKI+ LLI+C+VF IV SHI   DAA++L +T R DH VD +D YSI HHK +++V 
Sbjct: 1  MKFQKIAALLIICLVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CCLG--KSGPSPRGPGH 75
          C L   +SGPSP+GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of HG10017752 vs. NCBI nr
Match: KAA0043550.1 (hypothetical protein E6C27_scaffold335G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 7.4e-14
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINV--ADAAQVLLKTSR-DHGVDYVDPYSIVHHKPEET 60
          MKFQKI+ LLIVCVVF IV SHI++   DAA++L +T R DH VD VDPYSI HHK +++
Sbjct: 1  MKFQKIAALLIVCVVFGIVFSHIDIGTVDAARMLFETLRDDHDVDCVDPYSIDHHKAKDS 60

Query: 61 VSCCLGK--SGPSPRGPGH 75
          V C L    SGPS +GPGH
Sbjct: 61 VKCWLENLGSGPSLKGPGH 79

[Close]

BLAST of HG10017752 vs. ExPASy TrEMBL
Match: A0A0A0KTV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011720 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLL----KTSRDHGVDY-VDPYSIVHHKPE 60
          MKFQKI+TLLIVCV+  +VLS INVADAA++LL    +   DHGVDY +DPYSIV+ K +
Sbjct: 2  MKFQKITTLLIVCVLVGVVLSQINVADAARILLSETPRDDHDHGVDYHIDPYSIVYQKAK 61

Query: 61 ETVSCCLGK--SGPSPRGPGH 75
          E++SC LGK  SGPSP GPGH
Sbjct: 62 ESISCWLGKLSSGPSPSGPGH 82

[Close]

BLAST of HG10017752 vs. ExPASy TrEMBL
Match: A0A5A7TL44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00460 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLLKTSR-DHGVDYVDPYSIVHHKPEETVS 60
          MKFQKI+ LLI+CVVF IV SHI   DAA++L +T R DH VD +D YSI HHK +++V 
Sbjct: 1  MKFQKIAALLIICVVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CCLG--KSGPSPRGPGH 75
          C L   +SGPSP+GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of HG10017752 vs. ExPASy TrEMBL
Match: A0A5D3BS33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00050 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.5e-15
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLLKTSR-DHGVDYVDPYSIVHHKPEETVS 60
          MKFQKI+ LLI+C+VF IV SHI   DAA++L +T R DH VD +D YSI HHK +++V 
Sbjct: 1  MKFQKIAALLIICLVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CCLG--KSGPSPRGPGH 75
          C L   +SGPSP+GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of HG10017752 vs. ExPASy TrEMBL
Match: A0A5A7TJV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00490 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.6e-14
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINV--ADAAQVLLKTSR-DHGVDYVDPYSIVHHKPEET 60
          MKFQKI+ LLIVCVVF IV SHI++   DAA++L +T R DH VD VDPYSI HHK +++
Sbjct: 1  MKFQKIAALLIVCVVFGIVFSHIDIGTVDAARMLFETLRDDHDVDCVDPYSIDHHKAKDS 60

Query: 61 VSCCLGK--SGPSPRGPGH 75
          V C L    SGPS +GPGH
Sbjct: 61 VKCWLENLGSGPSLKGPGH 79

[Close]

BLAST of HG10017752 vs. ExPASy TrEMBL
Match: A0A0A0L125 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G165860 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.8e-06
Identity = 43/82 (52.44%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLLKTSRD-----HGV-DYVDPYSIVHHKP 60
          MKFQ ISTLLIVCVVF IV SH  V DA +VLL +        HG     DPY+    K 
Sbjct: 1  MKFQNISTLLIVCVVFGIVFSHTGVVDATRVLLGSGPSPGGPGHGTKPPADPYTF---KA 60

Query: 61 EETVSCCLGK--SGPSPRGPGH 75
          +E V   L    SGPSP GPGH
Sbjct: 61 KERVKPWLENLGSGPSPGGPGH 79

The following BLAST results are available for this feature:

BLAST of HG10017752 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018440.1	1.9e-17	68.42	hypothetical protein SDJN02_20308, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN53025.1	2.5e-17	65.43	hypothetical protein Csa_015299 [Cucumis sativus]	[more]
KAA0043548.1	8.8e-15	61.04	hypothetical protein E6C27_scaffold335G00460 [Cucumis melo var. makuwa]	[more]
TYK02483.1	2.0e-14	59.74	hypothetical protein E5676_scaffold784G00050 [Cucumis melo var. makuwa]	[more]
KAA0043550.1	7.4e-14	62.03	hypothetical protein E6C27_scaffold335G00490 [Cucumis melo var. makuwa]	[more]

BLAST of HG10017752 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTV4	1.2e-17	65.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011720 PE=4 SV=1	[more]
A0A5A7TL44	4.2e-15	61.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BS33	9.5e-15	59.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJV8	3.6e-14	62.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0L125	2.8e-06	52.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G165860 PE=4 SV=1	[more]

BLAST of HG10017752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040273	PAMP-induced secreted peptide 1	PANTHER	PTHR37245	PAMP-INDUCED SECRETED PEPTIDE 1	coord: 1..74
None	No IPR available	PANTHER	PTHR37245:SF4	PAMP-INDUCED SECRETED PEPTIDE 1	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017752.1	HG10017752.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response