Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGTCGTCTCTAAGGCTTCTTTCATGGCTCTTGTAGCCATCTTGTTCGCCGTCTTCTCTATTGCCGTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCTGCTACCTCTGTTGTACCGTCGTTGAGTGTCGCTTGCGTTGGTGCTTTCGTCGCTCTCCTCTTTGGATCTGCACTCAAAGCTTGA
mRNA sequence
ATGGCCGCCGTCGTCTCTAAGGCTTCTTTCATGGCTCTTGTAGCCATCTTGTTCGCCGTCTTCTCTATTGCCGTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCTGCTACCTCTGTTGTACCGTCGTTGAGTGTCGCTTGCGTTGGTGCTTTCGTCGCTCTCCTCTTTGGATCTGCACTCAAAGCTTGA
Coding sequence (CDS)
ATGGCCGCCGTCGTCTCTAAGGCTTCTTTCATGGCTCTTGTAGCCATCTTGTTCGCCGTCTTCTCTATTGCCGTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCTGCTACCTCTGTTGTACCGTCGTTGAGTGTCGCTTGCGTTGGTGCTTTCGTCGCTCTCCTCTTTGGATCTGCACTCAAAGCTTGA
Protein sequence
MAAVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGSALKA
Homology
BLAST of HG10014237 vs. NCBI nr
Match:
KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0
Query: 3 AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
A VSK SFMALVA+LF V S+AVAQSAESPAPAPASPATSVVPSLSVACVGAFVAL+FGS
Sbjct: 25 AAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFGS 84
Query: 63 ALKA 67
ALKA
Sbjct: 85 ALKA 88
BLAST of HG10014237 vs. NCBI nr
Match:
KAG6591454.1 (hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0
Query: 3 AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
A VSK SFMALVA+LF V S+AVAQSAESPAPAPASPATSVVPSLSVACVGAFVAL+FGS
Sbjct: 29 AAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFGS 88
Query: 63 ALKA 67
ALKA
Sbjct: 89 ALKA 92
BLAST of HG10014237 vs. NCBI nr
Match:
KGN55315.1 (hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sativus] >BAA11428.1 CRG16 [Cucumis sativus])
HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 0
Query: 3 AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
A VSK SFMALVA+LFAV S+AVAQSAESPAP PASPA SVVPSLS ACVGAF+ALLFGS
Sbjct: 2 AAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFGS 61
Query: 63 ALKA 67
ALKA
Sbjct: 62 ALKA 65
BLAST of HG10014237 vs. NCBI nr
Match:
KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 60.5 bits (145), Expect = 6.5e-06
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0
Query: 3 AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
A VS+AS +AL+AI+FAV S+A + E+PAP+PASPATS+ PS ACV AFVAL FGS
Sbjct: 69 AGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGS 128
Query: 63 ALK 66
L+
Sbjct: 129 TLR 128
BLAST of HG10014237 vs. NCBI nr
Match:
KGN62403.1 (hypothetical protein Csa_018595 [Cucumis sativus])
HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 0
Query: 3 AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
A +SK S +AL+A++FA+ S+A + E+PAP+PASPATS+ PS AC+ AF+AL FGS
Sbjct: 68 AALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFGS 127
Query: 63 ALK 66
L+
Sbjct: 128 TLR 127
BLAST of HG10014237 vs. ExPASy TrEMBL
Match:
Q96504 (CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1)
HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 0
Query: 3 AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
A VSK SFMALVA+LFAV S+AVAQSAESPAP PASPA SVVPSLS ACVGAF+ALLFGS
Sbjct: 2 AAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFGS 61
Query: 63 ALKA 67
ALKA
Sbjct: 62 ALKA 65
BLAST of HG10014237 vs. ExPASy TrEMBL
Match:
A0A0A0LKU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 5.9e-05
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 0
Query: 3 AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
A +SK S +AL+A++FA+ S+A + E+PAP+PASPATS+ PS AC+ AF+AL FGS
Sbjct: 68 AALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFGS 127
Query: 63 ALK 66
L+
Sbjct: 128 TLR 127
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7024335.1 | 1.8e-16 | 89.06 | hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6591454.1 | 1.8e-16 | 89.06 | hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN55315.1 | 2.6e-15 | 85.94 | hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sat... | [more] |
| KAG6598305.1 | 6.5e-06 | 61.90 | hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN62403.1 | 1.2e-04 | 53.97 | hypothetical protein Csa_018595 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Q96504 | 1.3e-15 | 85.94 | CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1 | [more] |
| A0A0A0LKU1 | 5.9e-05 | 53.97 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
