HG10014237 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014237
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCRG16
LocationChr02: 8803670 .. 8803870 (+)
RNA-Seq ExpressionHG10014237
SyntenyHG10014237
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGTCGTCTCTAAGGCTTCTTTCATGGCTCTTGTAGCCATCTTGTTCGCCGTCTTCTCTATTGCCGTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCTGCTACCTCTGTTGTACCGTCGTTGAGTGTCGCTTGCGTTGGTGCTTTCGTCGCTCTCCTCTTTGGATCTGCACTCAAAGCTTGA

mRNA sequence

ATGGCCGCCGTCGTCTCTAAGGCTTCTTTCATGGCTCTTGTAGCCATCTTGTTCGCCGTCTTCTCTATTGCCGTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCTGCTACCTCTGTTGTACCGTCGTTGAGTGTCGCTTGCGTTGGTGCTTTCGTCGCTCTCCTCTTTGGATCTGCACTCAAAGCTTGA

Coding sequence (CDS)

ATGGCCGCCGTCGTCTCTAAGGCTTCTTTCATGGCTCTTGTAGCCATCTTGTTCGCCGTCTTCTCTATTGCCGTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCTGCTACCTCTGTTGTACCGTCGTTGAGTGTCGCTTGCGTTGGTGCTTTCGTCGCTCTCCTCTTTGGATCTGCACTCAAAGCTTGA

Protein sequence

MAAVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGSALKA
Homology
[Close]
BLAST of HG10014237 vs. NCBI nr
Match: KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 3  AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
          A VSK SFMALVA+LF V S+AVAQSAESPAPAPASPATSVVPSLSVACVGAFVAL+FGS
Sbjct: 25 AAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFGS 84

Query: 63 ALKA 67
          ALKA
Sbjct: 85 ALKA 88

[Close]
BLAST of HG10014237 vs. NCBI nr
Match: KAG6591454.1 (hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 3  AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
          A VSK SFMALVA+LF V S+AVAQSAESPAPAPASPATSVVPSLSVACVGAFVAL+FGS
Sbjct: 29 AAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFGS 88

Query: 63 ALKA 67
          ALKA
Sbjct: 89 ALKA 92

[Close]
BLAST of HG10014237 vs. NCBI nr
Match: KGN55315.1 (hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sativus] >BAA11428.1 CRG16 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 3  AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
          A VSK SFMALVA+LFAV S+AVAQSAESPAP PASPA SVVPSLS ACVGAF+ALLFGS
Sbjct: 2  AAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFGS 61

Query: 63 ALKA 67
          ALKA
Sbjct: 62 ALKA 65

[Close]
BLAST of HG10014237 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 6.5e-06
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 3   AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
           A VS+AS +AL+AI+FAV S+A   + E+PAP+PASPATS+ PS   ACV AFVAL FGS
Sbjct: 69  AGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGS 128

Query: 63  ALK 66
            L+
Sbjct: 129 TLR 128

[Close]
BLAST of HG10014237 vs. NCBI nr
Match: KGN62403.1 (hypothetical protein Csa_018595 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 3   AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
           A +SK S +AL+A++FA+ S+A   + E+PAP+PASPATS+ PS   AC+ AF+AL FGS
Sbjct: 68  AALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFGS 127

Query: 63  ALK 66
            L+
Sbjct: 128 TLR 127

[Close]
BLAST of HG10014237 vs. ExPASy TrEMBL
Match: Q96504 (CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 3  AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
          A VSK SFMALVA+LFAV S+AVAQSAESPAP PASPA SVVPSLS ACVGAF+ALLFGS
Sbjct: 2  AAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFGS 61

Query: 63 ALKA 67
          ALKA
Sbjct: 62 ALKA 65

[Close]
BLAST of HG10014237 vs. ExPASy TrEMBL
Match: A0A0A0LKU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-05
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 3   AVVSKASFMALVAILFAVFSIAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALLFGS 62
           A +SK S +AL+A++FA+ S+A   + E+PAP+PASPATS+ PS   AC+ AF+AL FGS
Sbjct: 68  AALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFGS 127

Query: 63  ALK 66
            L+
Sbjct: 128 TLR 127

The following BLAST results are available for this feature:
BLAST of HG10014237 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024335.11.8e-1689.06hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591454.11.8e-1689.06hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN55315.12.6e-1585.94hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sat... [more]
KAG6598305.16.5e-0661.90hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62403.11.2e-0453.97hypothetical protein Csa_018595 [Cucumis sativus][more]
BLAST of HG10014237 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10014237 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Q965041.3e-1585.94CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1[more]
A0A0A0LKU15.9e-0553.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1[more]
BLAST of HG10014237 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014237.1HG10014237.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane