HG10013626 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013626
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S ribosomal protein L39
LocationChr02: 3147589 .. 3147807 (-)
RNA-Seq ExpressionHG10013626
SyntenyHG10013626
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCAGAATAGGCCAATCCCGCACTGGATCCGCCTGAGAACAGACAACACGATCAGGTATTAAGCCTACGCTATTTGAATCTACATATTTCCCTTTGAATATCTCTATCTCTCTCGGATCGATTTTGAATATTAGTTTCTGACGTTTTAATTTGGATCGTATTACAGATACAACGCAAAGCGCAGGCACTGGCGTCGTACCAAGCTAGGGTTTTGA

mRNA sequence

ATGAGGCAGAATAGGCCAATCCCGCACTGGATCCGCCTGAGAACAGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGTACCAAGCTAGGGTTTTGA

Coding sequence (CDS)

ATGAGGCAGAATAGGCCAATCCCGCACTGGATCCGCCTGAGAACAGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGTACCAAGCTAGGGTTTTGA

Protein sequence

MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Homology
[Close]
BLAST of HG10013626 vs. NCBI nr
Match: NP_180093.1 (Ribosomal protein L39 family protein [Arabidopsis thaliana] >AAD23670.1 60S ribosomal protein L39 [Arabidopsis thaliana] >AEC07671.1 Ribosomal protein L39 family protein [Arabidopsis thaliana])

HSP 1 Score: 79.3 bits (194), Expect = 7.1e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 10 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

[Close]
BLAST of HG10013626 vs. NCBI nr
Match: KAG6481052.1 (hypothetical protein ZIOFF_057644 [Zingiber officinale] >KAG6481057.1 hypothetical protein ZIOFF_057649 [Zingiber officinale])

HSP 1 Score: 79.3 bits (194), Expect = 7.1e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 37 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71

[Close]
BLAST of HG10013626 vs. NCBI nr
Match: CAF2068461.1 (unnamed protein product [Brassica napus] >CAG7898384.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 79.3 bits (194), Expect = 7.1e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 10 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

[Close]
BLAST of HG10013626 vs. NCBI nr
Match: KAA0064900.1 (hypothetical protein E6C27_scaffold82G002160 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 7.1e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 35

[Close]
BLAST of HG10013626 vs. NCBI nr
Match: XP_031480823.1 (60S ribosomal protein L39-like [Nymphaea colorata])

HSP 1 Score: 79.3 bits (194), Expect = 7.1e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 9.3e-15
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 7.9e-14
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 7.9e-14
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.9e-14
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.9e-14
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. ExPASy TrEMBL
Match: A0A6J1HZ80 (60S ribosomal protein L39 OS=Cucurbita maxima OX=3661 GN=LOC111467947 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. ExPASy TrEMBL
Match: A0A0D3BLW0 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106332948 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. ExPASy TrEMBL
Match: A0A397Y3W1 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_H01324 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. ExPASy TrEMBL
Match: A0A0A0LYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568530 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. ExPASy TrEMBL
Match: A0A1S3BCZ7 (60S ribosomal protein L39 OS=Cucumis melo OX=3656 GN=LOC103488337 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 10 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

[Close]
BLAST of HG10013626 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of HG10013626 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

The following BLAST results are available for this feature:
BLAST of HG10013626 vs. NCBI nr
Match NameE-valueIdentityDescription
NP_180093.17.1e-12100.00Ribosomal protein L39 family protein [Arabidopsis thaliana] >AAD23670.1 60S ribo... [more]
KAG6481052.17.1e-12100.00hypothetical protein ZIOFF_057644 [Zingiber officinale] >KAG6481057.1 hypothetic... [more]
CAF2068461.17.1e-12100.00unnamed protein product [Brassica napus] >CAG7898384.1 unnamed protein product [... [more]
KAA0064900.17.1e-12100.00hypothetical protein E6C27_scaffold82G002160 [Cucumis melo var. makuwa][more]
XP_031480823.17.1e-12100.0060S ribosomal protein L39-like [Nymphaea colorata][more]
BLAST of HG10013626 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P514249.3e-15100.0060S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2[more]
Q6KAJ87.9e-1494.2960S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P... [more]
P514267.9e-1494.2960S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P... [more]
Q5SMI47.9e-1494.2960S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P... [more]
P514257.9e-1494.2960S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1[more]
BLAST of HG10013626 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HZ803.5e-12100.0060S ribosomal protein L39 OS=Cucurbita maxima OX=3661 GN=LOC111467947 PE=3 SV=1[more]
A0A0D3BLW03.5e-12100.00Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10633294... [more]
A0A397Y3W13.5e-12100.00Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_H01324 PE=3 SV=1[more]
A0A0A0LYE13.5e-12100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568530 PE=3 SV=1[more]
A0A1S3BCZ73.5e-12100.0060S ribosomal protein L39 OS=Cucumis melo OX=3656 GN=LOC103488337 PE=3 SV=1[more]
BLAST of HG10013626 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G25210.16.6e-16100.00Ribosomal protein L39 family protein [more]
AT4G31985.16.6e-16100.00Ribosomal protein L39 family protein [more]
AT3G02190.12.1e-1494.29Ribosomal protein L39 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 1..35
e-value: 4.3E-19
score: 70.2
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 1..34
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 1..33
e-value: 9.5E-19
score: 66.8
NoneNo IPR availablePANTHERPTHR19970:SF31SUBFAMILY NOT NAMEDcoord: 1..35
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 1..35
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 14..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013626.1HG10013626.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome