HG10012877 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10012877
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 24916594 .. 24916800 (-)
RNA-Seq ExpressionHG10012877
SyntenyHG10012877
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGACCCGGAATTTTCCTCTGTTTTTTGGCTTTGATCATAACCAGTAGCTTTGCTCTGCAGCAGCCCAACGCCGGCGGCGGCACGAAAACTATTACCGGACGAGGCGGCGGTGGCGGTGGCGGAGGTGGATCGAGTAGTGGTCCGGGTACGGGCTCTGGTGAAGGGCATGGGTCGGGAAGAGGTGGTGGGTCGGGTCGATAG

mRNA sequence

ATGGCTCGACCCGGAATTTTCCTCTGTTTTTTGGCTTTGATCATAACCAGTAGCTTTGCTCTGCAGCAGCCCAACGCCGGCGGCGGCACGAAAACTATTACCGGACGAGGCGGCGGTGGCGGTGGCGGAGGTGGATCGAGTAGTGGTCCGGGTACGGGCTCTGGTGAAGGGCATGGGTCGGGAAGAGGTGGTGGGTCGGGTCGATAG

Coding sequence (CDS)

ATGGCTCGACCCGGAATTTTCCTCTGTTTTTTGGCTTTGATCATAACCAGTAGCTTTGCTCTGCAGCAGCCCAACGCCGGCGGCGGCACGAAAACTATTACCGGACGAGGCGGCGGTGGCGGTGGCGGAGGTGGATCGAGTAGTGGTCCGGGTACGGGCTCTGGTGAAGGGCATGGGTCGGGAAGAGGTGGTGGGTCGGGTCGATAG

Protein sequence

MARPGIFLCFLALIITSSFALQQPNAGGGTKTITGRGGGGGGGGGSSSGPGTGSGEGHGSGRGGGSGR
Homology
BLAST of HG10012877 vs. NCBI nr
Match: KAG6582444.1 (hypothetical protein SDJN03_22446, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-09
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 0

Query: 1  MARPGIFLCFLALIITSSFALQQPN--AGGGTKTIT--------GRGGGGGGGGGSSSGP 60
          MARPG+FLCFL LI++SSFA QQPN  AGG  +TI         G GGGGGGGGGSSSGP
Sbjct: 1  MARPGVFLCFLVLIVSSSFAQQQPNADAGGCMETINRRGGGGGGGGGGGGGGGGGSSSGP 60

Query: 61 GTGSGEGHGSGRGGG 66
          GTGSG G GSGRGGG
Sbjct: 61 GTGSGSGSGSGRGGG 75

BLAST of HG10012877 vs. NCBI nr
Match: KGN56771.1 (hypothetical protein Csa_010322 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-08
Identity = 58/74 (78.38%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 1  MARPGIFLCFLALIITSSFALQQP-NAG-GGTKTIT---GRGGGGGGGGGSSSGPGTGSG 60
          MARPGIFLC LALII SSFA QQP N G G TKTIT   G GGGGGGGGGSSSGP TGSG
Sbjct: 1  MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60

Query: 61 EGHGSGR-GGGSGR 69
           G GSG  GGGSGR
Sbjct: 61 SGSGSGSGGGGSGR 74

BLAST of HG10012877 vs. ExPASy TrEMBL
Match: A0A0A0L9I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133220 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-08
Identity = 58/74 (78.38%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 1  MARPGIFLCFLALIITSSFALQQP-NAG-GGTKTIT---GRGGGGGGGGGSSSGPGTGSG 60
          MARPGIFLC LALII SSFA QQP N G G TKTIT   G GGGGGGGGGSSSGP TGSG
Sbjct: 1  MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60

Query: 61 EGHGSGR-GGGSGR 69
           G GSG  GGGSGR
Sbjct: 61 SGSGSGSGGGGSGR 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6582444.14.9e-0970.67hypothetical protein SDJN03_22446, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN56771.14.2e-0878.38hypothetical protein Csa_010322 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L9I62.0e-0878.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133220 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10012877.1HG10012877.1mRNA