Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGACCCGGAATTTTCCTCTGTTTTTTGGCTTTGATCATAACCAGTAGCTTTGCTCTGCAGCAGCCCAACGCCGGCGGCGGCACGAAAACTATTACCGGACGAGGCGGCGGTGGCGGTGGCGGAGGTGGATCGAGTAGTGGTCCGGGTACGGGCTCTGGTGAAGGGCATGGGTCGGGAAGAGGTGGTGGGTCGGGTCGATAG mRNA sequence
ATGGCTCGACCCGGAATTTTCCTCTGTTTTTTGGCTTTGATCATAACCAGTAGCTTTGCTCTGCAGCAGCCCAACGCCGGCGGCGGCACGAAAACTATTACCGGACGAGGCGGCGGTGGCGGTGGCGGAGGTGGATCGAGTAGTGGTCCGGGTACGGGCTCTGGTGAAGGGCATGGGTCGGGAAGAGGTGGTGGGTCGGGTCGATAG Coding sequence (CDS)
ATGGCTCGACCCGGAATTTTCCTCTGTTTTTTGGCTTTGATCATAACCAGTAGCTTTGCTCTGCAGCAGCCCAACGCCGGCGGCGGCACGAAAACTATTACCGGACGAGGCGGCGGTGGCGGTGGCGGAGGTGGATCGAGTAGTGGTCCGGGTACGGGCTCTGGTGAAGGGCATGGGTCGGGAAGAGGTGGTGGGTCGGGTCGATAG Protein sequence
MARPGIFLCFLALIITSSFALQQPNAGGGTKTITGRGGGGGGGGGSSSGPGTGSGEGHGSGRGGGSGR
Homology
BLAST of HG10012877 vs. NCBI nr
Match:
KAG6582444.1 (hypothetical protein SDJN03_22446, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 70.9 bits (172), Expect = 4.9e-09
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 0
Query: 1 MARPGIFLCFLALIITSSFALQQPN--AGGGTKTIT--------GRGGGGGGGGGSSSGP 60 MARPG+FLCFL LI++SSFA QQPN AGG +TI G GGGGGGGGGSSSGP Sbjct: 1 MARPGVFLCFLVLIVSSSFAQQQPNADAGGCMETINRRGGGGGGGGGGGGGGGGGSSSGP 60 Query: 61 GTGSGEGHGSGRGGG 66 GTGSG G GSGRGGG Sbjct: 61 GTGSGSGSGSGRGGG 75
BLAST of HG10012877 vs. NCBI nr
Match:
KGN56771.1 (hypothetical protein Csa_010322 [Cucumis sativus])
HSP 1 Score: 67.8 bits (164), Expect = 4.2e-08
Identity = 58/74 (78.38%), Postives = 58/74 (78.38%), Query Frame = 0
Query: 1 MARPGIFLCFLALIITSSFALQQP-NAG-GGTKTIT---GRGGGGGGGGGSSSGPGTGSG 60 MARPGIFLC LALII SSFA QQP N G G TKTIT G GGGGGGGGGSSSGP TGSG Sbjct: 1 MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60 Query: 61 EGHGSGR-GGGSGR 69 G GSG GGGSGR Sbjct: 61 SGSGSGSGGGGSGR 74
BLAST of HG10012877 vs. ExPASy TrEMBL
Match:
A0A0A0L9I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133220 PE=4 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 2.0e-08
Identity = 58/74 (78.38%), Postives = 58/74 (78.38%), Query Frame = 0
Query: 1 MARPGIFLCFLALIITSSFALQQP-NAG-GGTKTIT---GRGGGGGGGGGSSSGPGTGSG 60 MARPGIFLC LALII SSFA QQP N G G TKTIT G GGGGGGGGGSSSGP TGSG Sbjct: 1 MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60 Query: 61 EGHGSGR-GGGSGR 69 G GSG GGGSGR Sbjct: 61 SGSGSGSGGGGSGR 74
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAG6582444.1 4.9e-09 70.67 hypothetical protein SDJN03_22446, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN56771.1 4.2e-08 78.38 hypothetical protein Csa_010322 [Cucumis sativus] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0L9I6 2.0e-08 78.38 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133220 PE=4 SV=1 [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
A T G G C T C G A C C C G G A A T T T T C C T C T G T T T T T T G G C T T T G A T C A T A A C C A G T A G C T T T G C T C T G C A G C A G C C C A A C G C C G G C G G C G G C A C G A A A A C T A T T A C C G G A C G A G G C G G C G G T G G C G G T G G C G G A G G T G G A T C G A G T A G T G G T C C G G G T A C G G G C T C T G G T G A A G G G C A T G G G T C G G G A A G A G G T G G T G G G T C G G G T C G A T A G 20 40 60 80 100 120 140 160 180 200 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 23..68
Relationships
The following mRNA feature(s) are a part of this gene: