Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACAACAGCTTTGGTTGCTTGGAAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAACGTTTCGGCAAGAGAACTCGCCGCTGGCACGGCTCGTAAGTCTTTCTCTTTCCATAATACCCTTCTGACACTGACAATATTGTTTTAAATTTACTGTAACCAAAGTATCAGCTAAAGCTTTTGAGTTGATTGGTGATTTAACTGTACGTTTTCAGAAACCCTTTTATACTTTTTGTTTTCGGGTTAATAGGTGAGTCGTTGTTGGTGACGGAGATGAATGGTGTGATGGGCAGAAGATTAATTGTTCGACAGTTGGATATCCCTAGGAGAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTCCTAA
mRNA sequence
ATGGCTTCAACAACAGCTTTGGTTGCTTGGAAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAACGTTTCGGCAAGAGAACTCGCCGCTGGCACGGCTCGTGAGTCGTTGTTGGTGACGGAGATGAATGGTGTGATGGGCAGAAGATTAATTGTTCGACAGTTGGATATCCCTAGGAGAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTCCTAA
Coding sequence (CDS)
ATGGCTTCAACAACAGCTTTGGTTGCTTGGAAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAACGTTTCGGCAAGAGAACTCGCCGCTGGCACGGCTCGTGAGTCGTTGTTGGTGACGGAGATGAATGGTGTGATGGGCAGAAGATTAATTGTTCGACAGTTGGATATCCCTAGGAGAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTCCTAA
Protein sequence
MASTTALVAWKKVIFFALLLLAFNVSARELAAGTARESLLVTEMNGVMGRRLIVRQLDIPRRGNYSPPPPRRHPPPYSS
Homology
BLAST of HG10012413 vs. NCBI nr
Match:
KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 51/78 (65.38%), Postives = 56/78 (71.79%), Query Frame = 0
Query: 1 MASTTALVAWKKVIFFALLLLAFNVSARELAAGTARESLLVTEM--NGVMGRRLIVRQLD 60
MAS +A V WK+V+FFALLLLAFNVSAREL GT + V EM +GRRLI RQLD
Sbjct: 1 MASPSAFVPWKEVVFFALLLLAFNVSAREL-VGTNIVARTVHEMTIETNVGRRLIARQLD 60
Query: 61 IPRRGNYSPPPPRRHPPP 77
GNYSPPPPRR PPP
Sbjct: 61 TSWGGNYSPPPPRRRPPP 77
BLAST of HG10012413 vs. NCBI nr
Match:
KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 80.9 bits (198), Expect = 5.5e-12
Identity = 51/78 (65.38%), Postives = 56/78 (71.79%), Query Frame = 0
Query: 1 MASTTALVAWKKVIFFALLLLAFNVSARELAAGTARESLLVTEM--NGVMGRRLIVRQLD 60
MAS +A V WK+V+FFALLLLAFNVSAREL GT + V EM +GRRLI RQLD
Sbjct: 1 MASPSAFVPWKEVVFFALLLLAFNVSAREL-VGTNIVARTVHEMTIETNVGRRLIARQLD 60
Query: 61 IPRRGNYSPPPPRRHPPP 77
GNYSPPPPRR PPP
Sbjct: 61 TSWGGNYSPPPPRRPPPP 77
BLAST of HG10012413 vs. NCBI nr
Match:
KGN57260.1 (hypothetical protein Csa_011296 [Cucumis sativus])
HSP 1 Score: 80.1 bits (196), Expect = 9.4e-12
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 0
Query: 3 STTALVAWKKV-IFFALLLLAFNVSARELAAGTARESLLVTEMNGVMGRRLIVRQLDIPR 62
+T A VAWKKV IFF LLLLA+N+SAREL A T E L TEMN V+ RRL VRQLD
Sbjct: 4 ATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLDTSW 63
Query: 63 RGNYSPPP 70
RGNY PPP
Sbjct: 64 RGNYFPPP 71
BLAST of HG10012413 vs. NCBI nr
Match:
KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 77.8 bits (190), Expect = 4.7e-11
Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0
Query: 1 MASTTALVAWKKVIFFALLLLAFNVSARELAAG-----TARESLLVTEMNGVM-GRRLIV 60
MAS TALVAWKKV F LL+A +VSARELA TARE + T NGV+ G RLI
Sbjct: 1 MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTARE--MATMPNGVIGGSRLIA 60
Query: 61 RQLDIPRRGNYSPPPPRRHPPP 77
RQLD RG+YSPPPPR PPP
Sbjct: 61 RQLDTAWRGHYSPPPPRSPPPP 80
BLAST of HG10012413 vs. NCBI nr
Match:
KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 77.8 bits (190), Expect = 4.7e-11
Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0
Query: 1 MASTTALVAWKKVIFFALLLLAFNVSARELAAG-----TARESLLVTEMNGV-MGRRLIV 60
MAS TALVAWKKV F LL+A +VSARELA TARE + T NGV +G RLI
Sbjct: 1 MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTARE--MATMPNGVIVGSRLIA 60
Query: 61 RQLDIPRRGNYSPPPPRRHPPP 77
RQLD RG+YSPPPPR PPP
Sbjct: 61 RQLDTAWRGHYSPPPPRSPPPP 80
BLAST of HG10012413 vs. ExPASy TrEMBL
Match:
A0A0A0L5K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 4.6e-12
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 0
Query: 3 STTALVAWKKV-IFFALLLLAFNVSARELAAGTARESLLVTEMNGVMGRRLIVRQLDIPR 62
+T A VAWKKV IFF LLLLA+N+SAREL A T E L TEMN V+ RRL VRQLD
Sbjct: 4 ATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLDTSW 63
Query: 63 RGNYSPPP 70
RGNY PPP
Sbjct: 64 RGNYFPPP 71
BLAST of HG10012413 vs. ExPASy TrEMBL
Match:
A0A0A0LB11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0
Query: 13 VIFFALLLLAFNVSARELAAGTARESLLVTEMNGVMGRRLIVRQLDIPRRGNYSPPPPRR 72
++FF+LLLLAFN S LA ARE ++ E N MGR+L RQLD +GNYSPPPP R
Sbjct: 7 LVFFSLLLLAFNFSTGVLAR-PARE-MVAVETNWEMGRKLTARQLDTSWKGNYSPPPPNR 66
Query: 73 HPPP 77
PPP
Sbjct: 67 PPPP 68
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7030841.1 | 3.2e-12 | 65.38 | hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
KAG6600178.1 | 5.5e-12 | 65.38 | hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN57260.1 | 9.4e-12 | 67.65 | hypothetical protein Csa_011296 [Cucumis sativus] | [more] |
KAG6576804.1 | 4.7e-11 | 62.20 | hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7014831.1 | 4.7e-11 | 62.20 | hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L5K7 | 4.6e-12 | 67.65 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1 | [more] |
A0A0A0LB11 | 2.9e-06 | 57.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |