HG10012413 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10012413
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 20923960 .. 20924354 (+)
RNA-Seq ExpressionHG10012413
SyntenyHG10012413
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACAACAGCTTTGGTTGCTTGGAAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAACGTTTCGGCAAGAGAACTCGCCGCTGGCACGGCTCGTAAGTCTTTCTCTTTCCATAATACCCTTCTGACACTGACAATATTGTTTTAAATTTACTGTAACCAAAGTATCAGCTAAAGCTTTTGAGTTGATTGGTGATTTAACTGTACGTTTTCAGAAACCCTTTTATACTTTTTGTTTTCGGGTTAATAGGTGAGTCGTTGTTGGTGACGGAGATGAATGGTGTGATGGGCAGAAGATTAATTGTTCGACAGTTGGATATCCCTAGGAGAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTCCTAA

mRNA sequence

ATGGCTTCAACAACAGCTTTGGTTGCTTGGAAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAACGTTTCGGCAAGAGAACTCGCCGCTGGCACGGCTCGTGAGTCGTTGTTGGTGACGGAGATGAATGGTGTGATGGGCAGAAGATTAATTGTTCGACAGTTGGATATCCCTAGGAGAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTCCTAA

Coding sequence (CDS)

ATGGCTTCAACAACAGCTTTGGTTGCTTGGAAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAACGTTTCGGCAAGAGAACTCGCCGCTGGCACGGCTCGTGAGTCGTTGTTGGTGACGGAGATGAATGGTGTGATGGGCAGAAGATTAATTGTTCGACAGTTGGATATCCCTAGGAGAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTCCTAA

Protein sequence

MASTTALVAWKKVIFFALLLLAFNVSARELAAGTARESLLVTEMNGVMGRRLIVRQLDIPRRGNYSPPPPRRHPPPYSS
Homology
BLAST of HG10012413 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 51/78 (65.38%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 1  MASTTALVAWKKVIFFALLLLAFNVSARELAAGTARESLLVTEM--NGVMGRRLIVRQLD 60
          MAS +A V WK+V+FFALLLLAFNVSAREL  GT   +  V EM     +GRRLI RQLD
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSAREL-VGTNIVARTVHEMTIETNVGRRLIARQLD 60

Query: 61 IPRRGNYSPPPPRRHPPP 77
              GNYSPPPPRR PPP
Sbjct: 61 TSWGGNYSPPPPRRRPPP 77

BLAST of HG10012413 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 5.5e-12
Identity = 51/78 (65.38%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 1  MASTTALVAWKKVIFFALLLLAFNVSARELAAGTARESLLVTEM--NGVMGRRLIVRQLD 60
          MAS +A V WK+V+FFALLLLAFNVSAREL  GT   +  V EM     +GRRLI RQLD
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSAREL-VGTNIVARTVHEMTIETNVGRRLIARQLD 60

Query: 61 IPRRGNYSPPPPRRHPPP 77
              GNYSPPPPRR PPP
Sbjct: 61 TSWGGNYSPPPPRRPPPP 77

BLAST of HG10012413 vs. NCBI nr
Match: KGN57260.1 (hypothetical protein Csa_011296 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 9.4e-12
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 3  STTALVAWKKV-IFFALLLLAFNVSARELAAGTARESLLVTEMNGVMGRRLIVRQLDIPR 62
          +T A VAWKKV IFF LLLLA+N+SAREL A T  E  L TEMN V+ RRL VRQLD   
Sbjct: 4  ATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLDTSW 63

Query: 63 RGNYSPPP 70
          RGNY PPP
Sbjct: 64 RGNYFPPP 71

BLAST of HG10012413 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-11
Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 1  MASTTALVAWKKVIFFALLLLAFNVSARELAAG-----TARESLLVTEMNGVM-GRRLIV 60
          MAS TALVAWKKV F   LL+A +VSARELA       TARE  + T  NGV+ G RLI 
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTARE--MATMPNGVIGGSRLIA 60

Query: 61 RQLDIPRRGNYSPPPPRRHPPP 77
          RQLD   RG+YSPPPPR  PPP
Sbjct: 61 RQLDTAWRGHYSPPPPRSPPPP 80

BLAST of HG10012413 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-11
Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 1  MASTTALVAWKKVIFFALLLLAFNVSARELAAG-----TARESLLVTEMNGV-MGRRLIV 60
          MAS TALVAWKKV F   LL+A +VSARELA       TARE  + T  NGV +G RLI 
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTARE--MATMPNGVIVGSRLIA 60

Query: 61 RQLDIPRRGNYSPPPPRRHPPP 77
          RQLD   RG+YSPPPPR  PPP
Sbjct: 61 RQLDTAWRGHYSPPPPRSPPPP 80

BLAST of HG10012413 vs. ExPASy TrEMBL
Match: A0A0A0L5K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.6e-12
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 3  STTALVAWKKV-IFFALLLLAFNVSARELAAGTARESLLVTEMNGVMGRRLIVRQLDIPR 62
          +T A VAWKKV IFF LLLLA+N+SAREL A T  E  L TEMN V+ RRL VRQLD   
Sbjct: 4  ATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLDTSW 63

Query: 63 RGNYSPPP 70
          RGNY PPP
Sbjct: 64 RGNYFPPP 71

BLAST of HG10012413 vs. ExPASy TrEMBL
Match: A0A0A0LB11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 13 VIFFALLLLAFNVSARELAAGTARESLLVTEMNGVMGRRLIVRQLDIPRRGNYSPPPPRR 72
          ++FF+LLLLAFN S   LA   ARE ++  E N  MGR+L  RQLD   +GNYSPPPP R
Sbjct: 7  LVFFSLLLLAFNFSTGVLAR-PARE-MVAVETNWEMGRKLTARQLDTSWKGNYSPPPPNR 66

Query: 73 HPPP 77
           PPP
Sbjct: 67 PPPP 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7030841.13.2e-1265.38hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6600178.15.5e-1265.38hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57260.19.4e-1267.65hypothetical protein Csa_011296 [Cucumis sativus][more]
KAG6576804.14.7e-1162.20hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014831.14.7e-1162.20hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5K74.6e-1267.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1[more]
A0A0A0LB112.9e-0657.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10012413.1HG10012413.1mRNA