HG10011956 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011956
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Spindle pole body-associated protein
Location	Chr01: 15757876 .. 15758379 (+)
RNA-Seq Expression	HG10011956
Synteny	HG10011956

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTGTTTCTCTATTACTTCCAACTTCTCTACGATGCTACCATTTTCCTTCTTCAACACGAACCCTTCTTTCTAATTTCGCTGCTTCCTCACAACTCCTTTCCTTTGCTCACAAATCCACCAAATTCCGCACCAAAACTGTGGTTTTTGGGAACCAATCAGGCAACGAAAATGATTCTCAGTTTCTAGATGAAAATGGGGTCGTCGATGATATGGATGGATATTTGAATTACCATTCTTTCGAATATGACTCCGTCTGGGATACAAAGCCTTCTTGGTTAGCTTTCCATTTTGGGGCTTTCTTCTTCCACCATTTTTACTCTCGCTTTCTTATCTTATTTTTCAGCAACTATGTAAATGAGGTTTTTAGAAAAAACCCCAATATTGGGATTTTGGAATTAGTGCTAACAAATCAAGGAATCGTGAATTTCTATCATGGGTTCTTCATATATTTGGTTGGTAATGGTTATACAGAGAGAATTCTGTTTTCTCCAATGTAA

mRNA sequence

ATGGGAGCTGTTTCTCTATTACTTCCAACTTCTCTACGATGCTACCATTTTCCTTCTTCAACACGAACCCTTCTTTCTAATTTCGCTGCTTCCTCACAACTCCTTTCCTTTGCTCACAAATCCACCAAATTCCGCACCAAAACTGTGGTTTTTGGGAACCAATCAGGCAACGAAAATGATTCTCAGTTTCTAGATGAAAATGGGGTCGTCGATGATATGGATGGATATTTGAATTACCATTCTTTCGAATATGACTCCGTCTGGGATACAAAGCCTTCTTGGTTAGCTTTCCATTTTGGGGCTTTCTTCTTCCACCATTTTTACTCTCGCTTTCTTATCTTATTTTTCAGCAACTATGTAAATGAGGTTTTTAGAAAAAACCCCAATATTGGGATTTTGGAATTAGTGCTAACAAATCAAGGAATCGTGAATTTCTATCATGGGTTCTTCATATATTTGGTTGGTAATGGTTATACAGAGAGAATTCTGTTTTCTCCAATGTAA

Coding sequence (CDS)

ATGGGAGCTGTTTCTCTATTACTTCCAACTTCTCTACGATGCTACCATTTTCCTTCTTCAACACGAACCCTTCTTTCTAATTTCGCTGCTTCCTCACAACTCCTTTCCTTTGCTCACAAATCCACCAAATTCCGCACCAAAACTGTGGTTTTTGGGAACCAATCAGGCAACGAAAATGATTCTCAGTTTCTAGATGAAAATGGGGTCGTCGATGATATGGATGGATATTTGAATTACCATTCTTTCGAATATGACTCCGTCTGGGATACAAAGCCTTCTTGGTTAGCTTTCCATTTTGGGGCTTTCTTCTTCCACCATTTTTACTCTCGCTTTCTTATCTTATTTTTCAGCAACTATGTAAATGAGGTTTTTAGAAAAAACCCCAATATTGGGATTTTGGAATTAGTGCTAACAAATCAAGGAATCGTGAATTTCTATCATGGGTTCTTCATATATTTGGTTGGTAATGGTTATACAGAGAGAATTCTGTTTTCTCCAATGTAA

Protein sequence

MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWLAFHFGAFFFHHFYSRFLILFFSNYVNEVFRKNPNIGILELVLTNQGIVNFYHGFFIYLVGNGYTERILFSPM

Homology

[Close]

BLAST of HG10011956 vs. NCBI nr
Match: XP_038887717.1 (uncharacterized protein LOC120077773 [Benincasa hispida])

HSP 1 Score: 161.8 bits (408), Expect = 5.2e-36
Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 2  GAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDS 61
          GA+SL LPTSLR +H PSST+TLLSNF ASSQLLSF   STKFRTKTVVF NQSG ENDS
Sbjct: 3  GAISLFLPTSLRSFHCPSSTQTLLSNFPASSQLLSFTPNSTKFRTKTVVFRNQSGKENDS 62

Query: 62 QFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 95
          QFLDENGVV+DMDGYLNYHSFEYDSVWDTKPSW
Sbjct: 63 QFLDENGVVNDMDGYLNYHSFEYDSVWDTKPSW 95

[Close]

BLAST of HG10011956 vs. NCBI nr
Match: XP_008449434.1 (PREDICTED: uncharacterized protein LOC103491324 isoform X1 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 6.8e-36
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 60
          MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +ND
Sbjct: 1  MGALSLLLATSLPSYHFPSSTQTLLSNFAASSQLLSFTPKCTKFRTKTLVFGKQSRIDND 60

Query: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 95
          SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
Sbjct: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 94

[Close]

BLAST of HG10011956 vs. NCBI nr
Match: KAA0057316.1 (uncharacterized protein E6C27_scaffold280G001610 [Cucumis melo var. makuwa] >TYK13419.1 uncharacterized protein E5676_scaffold496G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 6.8e-36
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 60
          MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +ND
Sbjct: 1  MGALSLLLATSLPSYHFPSSTQTLLSNFAASSQLLSFTPKCTKFRTKTLVFGKQSRIDND 60

Query: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 95
          SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
Sbjct: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 94

[Close]

BLAST of HG10011956 vs. NCBI nr
Match: XP_016900713.1 (PREDICTED: uncharacterized protein LOC103491324 isoform X2 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 6.8e-36
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 60
          MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +ND
Sbjct: 1  MGALSLLLATSLPSYHFPSSTQTLLSNFAASSQLLSFTPKCTKFRTKTLVFGKQSRIDND 60

Query: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 95
          SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
Sbjct: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 94

[Close]

BLAST of HG10011956 vs. NCBI nr
Match: XP_004140096.1 (uncharacterized protein LOC101202761 [Cucumis sativus] >KGN47908.1 hypothetical protein Csa_002752 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.7e-34
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 60
          MGAVS  L +SLR Y FPSST+TLLSNFAASSQLLSF    TKFR+KT+VFG QSGN+ND
Sbjct: 1  MGAVSPFLASSLRPYRFPSSTQTLLSNFAASSQLLSFTPNCTKFRSKTLVFGKQSGNDND 60

Query: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 95
          SQFLDENGVV+DMDGYLNYHSFEYDSVWDTKP+W
Sbjct: 61 SQFLDENGVVNDMDGYLNYHSFEYDSVWDTKPAW 94

[Close]

BLAST of HG10011956 vs. ExPASy TrEMBL
Match: A0A5D3CTE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00380 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 60
          MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +ND
Sbjct: 1  MGALSLLLATSLPSYHFPSSTQTLLSNFAASSQLLSFTPKCTKFRTKTLVFGKQSRIDND 60

Query: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 95
          SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
Sbjct: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 94

[Close]

BLAST of HG10011956 vs. ExPASy TrEMBL
Match: A0A1S3BLE6 (uncharacterized protein LOC103491324 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491324 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 60
          MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +ND
Sbjct: 1  MGALSLLLATSLPSYHFPSSTQTLLSNFAASSQLLSFTPKCTKFRTKTLVFGKQSRIDND 60

Query: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 95
          SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
Sbjct: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 94

[Close]

BLAST of HG10011956 vs. ExPASy TrEMBL
Match: A0A1S4DXK9 (uncharacterized protein LOC103491324 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491324 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 60
          MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +ND
Sbjct: 1  MGALSLLLATSLPSYHFPSSTQTLLSNFAASSQLLSFTPKCTKFRTKTLVFGKQSRIDND 60

Query: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 95
          SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
Sbjct: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 94

[Close]

BLAST of HG10011956 vs. ExPASy TrEMBL
Match: A0A0A0KED9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410630 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.8e-34
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 60
          MGAVS  L +SLR Y FPSST+TLLSNFAASSQLLSF    TKFR+KT+VFG QSGN+ND
Sbjct: 1  MGAVSPFLASSLRPYRFPSSTQTLLSNFAASSQLLSFTPNCTKFRSKTLVFGKQSGNDND 60

Query: 61 SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 95
          SQFLDENGVV+DMDGYLNYHSFEYDSVWDTKP+W
Sbjct: 61 SQFLDENGVVNDMDGYLNYHSFEYDSVWDTKPAW 94

[Close]

BLAST of HG10011956 vs. ExPASy TrEMBL
Match: A0A6J1HWP2 (uncharacterized protein LOC111466970 OS=Cucurbita maxima OX=3661 GN=LOC111466970 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 60
           MG VSL L TSLR +HFP ST+TLLSNFAASSQ++SF  K T+FR K+VVFG QS NE++
Sbjct: 52  MGTVSLFLATSLRSHHFP-STQTLLSNFAASSQVVSFTPKCTRFRRKSVVFGKQSSNEDE 111

Query: 61  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 95
           SQFLDENG V+DMDGYLNYHSFEYDSVWDTKPSW
Sbjct: 112 SQFLDENGAVNDMDGYLNYHSFEYDSVWDTKPSW 144

[Close]

BLAST of HG10011956 vs. TAIR 10
Match: AT4G02725.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 17 FPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGY 76
          F   T  LLS  +  + L SF  K  +  TK   FG       DS+F+DE GVVDDM+G+
Sbjct: 14 FRPQTENLLSKLSFRTNLHSFNLKPIRISTKVRSFGGNRREPKDSRFVDEKGVVDDMEGF 73

Query: 77 LNYHSFEYDSVWDTKPSW 95
          L+  S EYDSVWDTKPSW
Sbjct: 74 LDNLSLEYDSVWDTKPSW 91

[Close]

BLAST of HG10011956 vs. TAIR 10
Match: AT4G02725.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 107 Blast hits to 107 proteins in 55 species: Archae - 0; Bacteria - 69; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 17 FPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGY 76
          F   T  LLS  +  + L SF  K  +  TK   FG       DS+F+DE GVVDDM+G+
Sbjct: 14 FRPQTENLLSKLSFRTNLHSFNLKPIRISTKVRSFGGNRREPKDSRFVDEKGVVDDMEGF 73

Query: 77 LNYHSFEYDSVWDTKPSW 95
          L+  S EYDSVWDTKPSW
Sbjct: 74 LDNLSLEYDSVWDTKPSW 91

The following BLAST results are available for this feature:

BLAST of HG10011956 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887717.1	5.2e-36	86.02	uncharacterized protein LOC120077773 [Benincasa hispida]	[more]
XP_008449434.1	6.8e-36	86.17	PREDICTED: uncharacterized protein LOC103491324 isoform X1 [Cucumis melo]	[more]
KAA0057316.1	6.8e-36	86.17	uncharacterized protein E6C27_scaffold280G001610 [Cucumis melo var. makuwa] >TYK...	[more]
XP_016900713.1	6.8e-36	86.17	PREDICTED: uncharacterized protein LOC103491324 isoform X2 [Cucumis melo]	[more]
XP_004140096.1	3.7e-34	81.91	uncharacterized protein LOC101202761 [Cucumis sativus] >KGN47908.1 hypothetical ...	[more]

BLAST of HG10011956 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10011956 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTE0	3.3e-36	86.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BLE6	3.3e-36	86.17	uncharacterized protein LOC103491324 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DXK9	3.3e-36	86.17	uncharacterized protein LOC103491324 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KED9	1.8e-34	81.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410630 PE=4 SV=1	[more]
A0A6J1HWP2	1.1e-31	77.66	uncharacterized protein LOC111466970 OS=Cucurbita maxima OX=3661 GN=LOC111466970...	[more]

BLAST of HG10011956 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02725.1	1.3e-13	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02725.2	1.3e-13	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36046	PROTEIN, PUTATIVE-RELATED	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011956.1	HG10011956.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane