HG10011705 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011705
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Reverse transcriptase domain, reverse transcriptase zinc-binding domain protein
Location	Chr01: 9634245 .. 9634730 (-)
RNA-Seq Expression	HG10011705
Synteny	HG10011705

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCACAATCTGAATCAAAGAGGATGGGTCAAGGAGAAGTTCGGGACGAAACCAGAGTGGATCTGCGGCAAAGCGGTTCCCTTCATACAGCTCGAATCATTCTCAGATGCCCCGAGAGGCATCCTTTCCTTGTTTGTTGGGTTGGTTCACGCGCGCGCAAACGAGCACCGGCCGCAACAGCAGGGAACTATGACCAATAGAGTCAGACACTTAGCTACATCCGCACGCAAAAGGAATGTGGTTCTGGTTGAGGCTTTCTTTCCTTTATTAGTAAAGGGGGCGCGGGACGTTCGCGGAGTCCGTGCCTTACGTACCACCACGGGACTGGTCGTTCTTGGGCGGATCCCGCTCCTAAACATAAGGGATAGGGGGAAGGTGGCCGGGCCTATCATATCAAAAGGGTTGTCGAAAGAGAACCGTACCGCTTGTGCGTTCTCTCTCTTGCCTGTGTGTACGTACTTTAAGCAGCCTTTCCGTAGATAA

mRNA sequence

ATGCCCCACAATCTGAATCAAAGAGGATGGGTCAAGGAGAAGTTCGGGACGAAACCAGAGTGGATCTGCGGCAAAGCGGTTCCCTTCATACAGCTCGAATCATTCTCAGATGCCCCGAGAGGCATCCTTTCCTTGTTTGTTGGGTTGGTTCACGCGCGCGCAAACGAGCACCGGCCGCAACAGCAGGGAACTATGACCAATAGAGTCAGACACTTAGCTACATCCGCACGCAAAAGGAATGTGGTTCTGGTTGAGGCTTTCTTTCCTTTATTAGTAAAGGGGGCGCGGGACGTTCGCGGAGTCCGTGCCTTACGTACCACCACGGGACTGGTCGTTCTTGGGCGGATCCCGCTCCTAAACATAAGGGATAGGGGGAAGGTGGCCGGGCCTATCATATCAAAAGGGTTGTCGAAAGAGAACCGTACCGCTTGTGCGTTCTCTCTCTTGCCTGTGTGTACGTACTTTAAGCAGCCTTTCCGTAGATAA

Coding sequence (CDS)

ATGCCCCACAATCTGAATCAAAGAGGATGGGTCAAGGAGAAGTTCGGGACGAAACCAGAGTGGATCTGCGGCAAAGCGGTTCCCTTCATACAGCTCGAATCATTCTCAGATGCCCCGAGAGGCATCCTTTCCTTGTTTGTTGGGTTGGTTCACGCGCGCGCAAACGAGCACCGGCCGCAACAGCAGGGAACTATGACCAATAGAGTCAGACACTTAGCTACATCCGCACGCAAAAGGAATGTGGTTCTGGTTGAGGCTTTCTTTCCTTTATTAGTAAAGGGGGCGCGGGACGTTCGCGGAGTCCGTGCCTTACGTACCACCACGGGACTGGTCGTTCTTGGGCGGATCCCGCTCCTAAACATAAGGGATAGGGGGAAGGTGGCCGGGCCTATCATATCAAAAGGGTTGTCGAAAGAGAACCGTACCGCTTGTGCGTTCTCTCTCTTGCCTGTGTGTACGTACTTTAAGCAGCCTTTCCGTAGATAA

Protein sequence

MPHNLNQRGWVKEKFGTKPEWICGKAVPFIQLESFSDAPRGILSLFVGLVHARANEHRPQQQGTMTNRVRHLATSARKRNVVLVEAFFPLLVKGARDVRGVRALRTTTGLVVLGRIPLLNIRDRGKVAGPIISKGLSKENRTACAFSLLPVCTYFKQPFRR

Homology

[Close]

BLAST of HG10011705 vs. NCBI nr
Match: RDY14270.1 (hypothetical protein CR513_00684, partial [Mucuna pruriens])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-25
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 65  MTNRVRHLATSARKRNVVLVEAFFPLL---VKGARDVRGVRALRTTTGLVVLGRIPLLNI 124
           MTNRVRHLATSARKRNVVLVEAFFPLL   VKGARDVRGVRA RTTTGLVVLGRIPLLNI
Sbjct: 1   MTNRVRHLATSARKRNVVLVEAFFPLLVKVVKGARDVRGVRAFRTTTGLVVLGRIPLLNI 60

Query: 125 RDRGKVAGPIISK 135
           RDRGKVAGPIISK
Sbjct: 61  RDRGKVAGPIISK 73

[Close]

BLAST of HG10011705 vs. NCBI nr
Match: GEZ75583.1 (reverse transcriptase domain, reverse transcriptase zinc-binding domain protein [Tanacetum cinerariifolium])

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-25
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 37  DAPRGILSLFVGLVHARANEHRPQQQGTMTNRVRHLATSARKRNVVLVEAFFPLLVKGAR 96
           +APRGILSLFVGLVHARANEHRPQQQ TMTNRVRHLATSARKRNVVL EAFF LLVKGAR
Sbjct: 236 NAPRGILSLFVGLVHARANEHRPQQQETMTNRVRHLATSARKRNVVLFEAFFSLLVKGAR 295

Query: 97  DVRGVRALRTT 108
           DVRGVRA  TT
Sbjct: 296 DVRGVRASCTT 306

[Close]

BLAST of HG10011705 vs. NCBI nr
Match: AGC78907.1 (hypothetical protein [Vicia faba] >AGC78936.1 hypothetical protein [Vicia faba] >AGC79021.1 hypothetical protein [Vicia faba])

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-22
Identity = 64/86 (74.42%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 65  MTNRVRHLATSARKRNVVLVEAFFPLLVKGARDVRGVRALRTTTGLVVLGRIPLLNIRDR 124
           MTNRVRHLA SARKRNVVLVEA FPLLV GARDVRGVRA RTTTGLVVLGRIPLLNIRDR
Sbjct: 1   MTNRVRHLAKSARKRNVVLVEALFPLLVLGARDVRGVRAFRTTTGLVVLGRIPLLNIRDR 60

Query: 125 GKVAGPIISKGLSKENRTACAFSLLP 151
           G   G    KG  K  R   +F + P
Sbjct: 61  G---GLSYQKGCKKRTRLPISFDVPP 83

[Close]

BLAST of HG10011705 vs. NCBI nr
Match: GEW90610.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Tanacetum cinerariifolium])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 51/59 (86.44%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 49  LVHARANEHRPQQQGTMTNRVRHLATSARKRNVVLVEAFFPLLVKGARDVRGVRALRTT 108
           L+H RANEHR QQQ TMTNRVRHLATSARKRNVVLVEAFF LLVKGA DVR VRA RTT
Sbjct: 59  LIHVRANEHRLQQQETMTNRVRHLATSARKRNVVLVEAFFSLLVKGAMDVRRVRASRTT 117

[Close]

BLAST of HG10011705 vs. NCBI nr
Match: PNX71049.1 (hypothetical protein L195_g058006 [Trifolium pratense])

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-13
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 40 RGILSLFVGLVHARANEHRPQQQGTMTNRVRHLATSARKRNVVLVEAFFPLLV 93
          RGILSLFVGL   RANEH PQQQGTMTNRVRHLA SARKRNVVLVEAF PLLV
Sbjct: 36 RGILSLFVGL---RANEHWPQQQGTMTNRVRHLAKSARKRNVVLVEAFLPLLV 85

[Close]

BLAST of HG10011705 vs. ExPASy TrEMBL
Match: A0A371IGX6 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00684 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 6.6e-26
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 65  MTNRVRHLATSARKRNVVLVEAFFPLL---VKGARDVRGVRALRTTTGLVVLGRIPLLNI 124
           MTNRVRHLATSARKRNVVLVEAFFPLL   VKGARDVRGVRA RTTTGLVVLGRIPLLNI
Sbjct: 1   MTNRVRHLATSARKRNVVLVEAFFPLLVKVVKGARDVRGVRAFRTTTGLVVLGRIPLLNI 60

Query: 125 RDRGKVAGPIISK 135
           RDRGKVAGPIISK
Sbjct: 61  RDRGKVAGPIISK 73

[Close]

BLAST of HG10011705 vs. ExPASy TrEMBL
Match: A0A699ITA5 (Reverse transcriptase domain, reverse transcriptase zinc-binding domain protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_547556 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-25
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 37  DAPRGILSLFVGLVHARANEHRPQQQGTMTNRVRHLATSARKRNVVLVEAFFPLLVKGAR 96
           +APRGILSLFVGLVHARANEHRPQQQ TMTNRVRHLATSARKRNVVL EAFF LLVKGAR
Sbjct: 236 NAPRGILSLFVGLVHARANEHRPQQQETMTNRVRHLATSARKRNVVLFEAFFSLLVKGAR 295

Query: 97  DVRGVRALRTT 108
           DVRGVRA  TT
Sbjct: 296 DVRGVRASCTT 306

[Close]

BLAST of HG10011705 vs. ExPASy TrEMBL
Match: R4IUB3 (Uncharacterized protein OS=Vicia faba OX=3906 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.6e-22
Identity = 64/86 (74.42%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 65  MTNRVRHLATSARKRNVVLVEAFFPLLVKGARDVRGVRALRTTTGLVVLGRIPLLNIRDR 124
           MTNRVRHLA SARKRNVVLVEA FPLLV GARDVRGVRA RTTTGLVVLGRIPLLNIRDR
Sbjct: 1   MTNRVRHLAKSARKRNVVLVEALFPLLVLGARDVRGVRAFRTTTGLVVLGRIPLLNIRDR 60

Query: 125 GKVAGPIISKGLSKENRTACAFSLLP 151
           G   G    KG  K  R   +F + P
Sbjct: 61  G---GLSYQKGCKKRTRLPISFDVPP 83

[Close]

BLAST of HG10011705 vs. ExPASy TrEMBL
Match: A0A2K3KXP4 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g058006 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 40 RGILSLFVGLVHARANEHRPQQQGTMTNRVRHLATSARKRNVVLVEAFFPLLV 93
          RGILSLFVGL   RANEH PQQQGTMTNRVRHLA SARKRNVVLVEAF PLLV
Sbjct: 36 RGILSLFVGL---RANEHWPQQQGTMTNRVRHLAKSARKRNVVLVEAFLPLLV 85

[Close]

BLAST of HG10011705 vs. ExPASy TrEMBL
Match: A0A6J5W1P4 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS4766 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.6e-11
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 65  MTNRVRHLATSARKRNVVLVEAFFPLLVKGARDVRGVRALRTTTGLV 112
           MTNR+RHLATSA KRNVVLVEAFFPLLVKGA DVRGV A RTTT LV
Sbjct: 1   MTNRIRHLATSACKRNVVLVEAFFPLLVKGAHDVRGVCAFRTTTRLV 47

The following BLAST results are available for this feature:

BLAST of HG10011705 vs. NCBI nr


Match Name	E-value	Identity	Description
RDY14270.1	1.4e-25	94.52	hypothetical protein CR513_00684, partial [Mucuna pruriens]	[more]
GEZ75583.1	5.2e-25	91.55	reverse transcriptase domain, reverse transcriptase zinc-binding domain protein ...	[more]
AGC78907.1	5.4e-22	74.42	hypothetical protein [Vicia faba] >AGC78936.1 hypothetical protein [Vicia faba] ...	[more]
GEW90610.1	1.5e-16	86.44	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Tanacetum cinerariifolium...	[more]
PNX71049.1	2.7e-13	88.68	hypothetical protein L195_g058006 [Trifolium pratense]	[more]

BLAST of HG10011705 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10011705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371IGX6	6.6e-26	94.52	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00684 P...	[more]
A0A699ITA5	2.5e-25	91.55	Reverse transcriptase domain, reverse transcriptase zinc-binding domain protein ...	[more]
R4IUB3	2.6e-22	74.42	Uncharacterized protein OS=Vicia faba OX=3906 PE=4 SV=1	[more]
A0A2K3KXP4	1.3e-13	88.68	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g058006 PE=4 SV=1	[more]
A0A6J5W1P4	4.6e-11	87.23	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS4766 PE=4...	[more]

BLAST of HG10011705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011705.1	HG10011705.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity