Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAATCGGTTCAATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGATTCAATCGGCTTTCGCTGTTAGAAAGATTCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCGGCTTGTTGGGACGCGATAAAGGCGGTGGAAGGATGCGAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGCTGTCGAGTGATATTACATGGATTGCCGGAGAAATGCACCGCCGTGGTTTTTTCGTCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAATTGA
mRNA sequence
ATGTCGAAATCGGTTCAATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGATTCAATCGGCTTTCGCTGTTAGAAAGATTCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCGGCTTGTTGGGACGCGATAAAGGCGGTGGAAGGATGCGAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGCTGTCGAGTGATATTACATGGATTGCCGGAGAAATGCACCGCCGTGGTTTTTTCGTCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAATTGA
Coding sequence (CDS)
ATGTCGAAATCGGTTCAATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGATTCAATCGGCTTTCGCTGTTAGAAAGATTCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCGGCTTGTTGGGACGCGATAAAGGCGGTGGAAGGATGCGAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGCTGTCGAGTGATATTACATGGATTGCCGGAGAAATGCACCGCCGTGGTTTTTTCGTCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAATTGA
Protein sequence
MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDMAMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLETEDKVEEN
Homology
BLAST of HG10010979 vs. NCBI nr
Match:
KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])
HSP 1 Score: 214.5 bits (545), Expect = 5.2e-52
Identity = 107/128 (83.59%), Postives = 116/128 (90.62%), Query Frame = 0
Query: 1 MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
MSKS +FFGFFLCALAISSS QSAFAVRKI EA+YSAD CWDAI AVEGC+++ID
Sbjct: 1 MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60
Query: 61 AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLET 120
AMKSNEIEVSYDCC+VILHG+PEKC AVVFSSGGEFSPE+SGAVNEYCDGMGITPPVLET
Sbjct: 61 AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120
Query: 121 ED-KVEEN 128
ED KV+EN
Sbjct: 121 EDTKVDEN 123
BLAST of HG10010979 vs. NCBI nr
Match:
XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 197.6 bits (501), Expect = 6.5e-47
Identity = 102/124 (82.26%), Postives = 109/124 (87.90%), Query Frame = 0
Query: 1 MSKSVQFFGFFLCALAISSSIQ--SAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEI 60
M KSV+F GF L ALAISSSIQ SAFA+R IPEA+ SADWSAA CWDAI AVEGC+DEI
Sbjct: 1 MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60
Query: 61 DMAMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVL 120
DMAMKSNEIEVS DCCR ILHGLP+KC A VFSSGGEFS EISGAVNEYCDGMGITPPVL
Sbjct: 61 DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120
Query: 121 ETED 123
ET++
Sbjct: 121 ETDE 123
BLAST of HG10010979 vs. NCBI nr
Match:
KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 192.2 bits (487), Expect = 2.7e-45
Identity = 96/118 (81.36%), Postives = 103/118 (87.29%), Query Frame = 0
Query: 1 MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
MSKSV+FFGFFL AL ISS I SAFA+RK P+AI SADWS AAC DA+ AVEGC+ EIDM
Sbjct: 1 MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60
Query: 61 AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVL 119
A+ SNEIEVSY+CCRVILHGLPEKC AVVFSSGGE S EISGAV EYCDGMGITPPVL
Sbjct: 61 AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118
BLAST of HG10010979 vs. NCBI nr
Match:
KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])
HSP 1 Score: 118.2 bits (295), Expect = 5.0e-23
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 0
Query: 68 EVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLETED-KVEE 127
+VSYDCC+VILHG+PEKC AVVFSSGGEFSP++SGAVNEYCDGMGITPPVLETED KVEE
Sbjct: 6 KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65
BLAST of HG10010979 vs. ExPASy TrEMBL
Match:
A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 2.5e-52
Identity = 107/128 (83.59%), Postives = 116/128 (90.62%), Query Frame = 0
Query: 1 MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
MSKS +FFGFFLCALAISSS QSAFAVRKI EA+YSAD CWDAI AVEGC+++ID
Sbjct: 1 MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60
Query: 61 AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLET 120
AMKSNEIEVSYDCC+VILHG+PEKC AVVFSSGGEFSPE+SGAVNEYCDGMGITPPVLET
Sbjct: 61 AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120
Query: 121 ED-KVEEN 128
ED KV+EN
Sbjct: 121 EDTKVDEN 123
BLAST of HG10010979 vs. ExPASy TrEMBL
Match:
A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)
HSP 1 Score: 209.5 bits (532), Expect = 8.0e-51
Identity = 104/128 (81.25%), Postives = 114/128 (89.06%), Query Frame = 0
Query: 1 MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
MSKSV+FFGFFLC LA SSS SAFAVRKI EA+YS+D CWDAI AV+GC++EID
Sbjct: 1 MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEIDT 60
Query: 61 AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLET 120
AMKSNEIEVSYDCC+VILHG+PEKC AVVFSSGGEFSP++SGAVNEYCDGMGITPPVLET
Sbjct: 61 AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLET 120
Query: 121 ED-KVEEN 128
ED KVEEN
Sbjct: 121 EDTKVEEN 123
BLAST of HG10010979 vs. ExPASy TrEMBL
Match:
A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)
HSP 1 Score: 197.6 bits (501), Expect = 3.2e-47
Identity = 102/124 (82.26%), Postives = 109/124 (87.90%), Query Frame = 0
Query: 1 MSKSVQFFGFFLCALAISSSIQ--SAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEI 60
M KSV+F GF L ALAISSSIQ SAFA+R IPEA+ SADWSAA CWDAI AVEGC+DEI
Sbjct: 1 MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60
Query: 61 DMAMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVL 120
DMAMKSNEIEVS DCCR ILHGLP+KC A VFSSGGEFS EISGAVNEYCDGMGITPPVL
Sbjct: 61 DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120
Query: 121 ETED 123
ET++
Sbjct: 121 ETDE 123
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0038539.1 | 5.2e-52 | 83.59 | hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136... | [more] |
XP_022931003.1 | 6.5e-47 | 82.26 | uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet... | [more] |
KAG6571831.1 | 2.7e-45 | 81.36 | hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAE8652857.1 | 5.0e-23 | 88.52 | hypothetical protein Csa_023774, partial [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TB28 | 2.5e-52 | 83.59 | Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A0A0LEG0 | 8.0e-51 | 81.25 | Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040... | [more] |
A0A6J1EX44 | 3.2e-47 | 82.26 | uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373... | [more] |
Match Name | E-value | Identity | Description | |