HG10010979 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010979
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProlamin_like domain-containing protein
LocationChr01: 1146955 .. 1147338 (-)
RNA-Seq ExpressionHG10010979
SyntenyHG10010979
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAATCGGTTCAATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGATTCAATCGGCTTTCGCTGTTAGAAAGATTCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCGGCTTGTTGGGACGCGATAAAGGCGGTGGAAGGATGCGAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGCTGTCGAGTGATATTACATGGATTGCCGGAGAAATGCACCGCCGTGGTTTTTTCGTCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAATTGA

mRNA sequence

ATGTCGAAATCGGTTCAATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGATTCAATCGGCTTTCGCTGTTAGAAAGATTCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCGGCTTGTTGGGACGCGATAAAGGCGGTGGAAGGATGCGAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGCTGTCGAGTGATATTACATGGATTGCCGGAGAAATGCACCGCCGTGGTTTTTTCGTCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAATTGA

Coding sequence (CDS)

ATGTCGAAATCGGTTCAATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGATTCAATCGGCTTTCGCTGTTAGAAAGATTCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCGGCTTGTTGGGACGCGATAAAGGCGGTGGAAGGATGCGAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGCTGTCGAGTGATATTACATGGATTGCCGGAGAAATGCACCGCCGTGGTTTTTTCGTCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAATTGA

Protein sequence

MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDMAMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLETEDKVEEN
Homology
BLAST of HG10010979 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 5.2e-52
Identity = 107/128 (83.59%), Postives = 116/128 (90.62%), Query Frame = 0

Query: 1   MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
           MSKS +FFGFFLCALAISSS QSAFAVRKI EA+YSAD     CWDAI AVEGC+++ID 
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLET 120
           AMKSNEIEVSYDCC+VILHG+PEKC AVVFSSGGEFSPE+SGAVNEYCDGMGITPPVLET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KVEEN 128
           ED KV+EN
Sbjct: 121 EDTKVDEN 123

BLAST of HG10010979 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197.6 bits (501), Expect = 6.5e-47
Identity = 102/124 (82.26%), Postives = 109/124 (87.90%), Query Frame = 0

Query: 1   MSKSVQFFGFFLCALAISSSIQ--SAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEI 60
           M KSV+F GF L ALAISSSIQ  SAFA+R IPEA+ SADWSAA CWDAI AVEGC+DEI
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DMAMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVL 120
           DMAMKSNEIEVS DCCR ILHGLP+KC A VFSSGGEFS EISGAVNEYCDGMGITPPVL
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

Query: 121 ETED 123
           ET++
Sbjct: 121 ETDE 123

BLAST of HG10010979 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.2 bits (487), Expect = 2.7e-45
Identity = 96/118 (81.36%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
           MSKSV+FFGFFL AL ISS I SAFA+RK P+AI SADWS AAC DA+ AVEGC+ EIDM
Sbjct: 1   MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVL 119
           A+ SNEIEVSY+CCRVILHGLPEKC AVVFSSGGE S EISGAV EYCDGMGITPPVL
Sbjct: 61  AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

BLAST of HG10010979 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 5.0e-23
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 68  EVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLETED-KVEE 127
           +VSYDCC+VILHG+PEKC AVVFSSGGEFSP++SGAVNEYCDGMGITPPVLETED KVEE
Sbjct: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65

BLAST of HG10010979 vs. ExPASy TrEMBL
Match: A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.5e-52
Identity = 107/128 (83.59%), Postives = 116/128 (90.62%), Query Frame = 0

Query: 1   MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
           MSKS +FFGFFLCALAISSS QSAFAVRKI EA+YSAD     CWDAI AVEGC+++ID 
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLET 120
           AMKSNEIEVSYDCC+VILHG+PEKC AVVFSSGGEFSPE+SGAVNEYCDGMGITPPVLET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KVEEN 128
           ED KV+EN
Sbjct: 121 EDTKVDEN 123

BLAST of HG10010979 vs. ExPASy TrEMBL
Match: A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 8.0e-51
Identity = 104/128 (81.25%), Postives = 114/128 (89.06%), Query Frame = 0

Query: 1   MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
           MSKSV+FFGFFLC LA SSS  SAFAVRKI EA+YS+D     CWDAI AV+GC++EID 
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEIDT 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLET 120
           AMKSNEIEVSYDCC+VILHG+PEKC AVVFSSGGEFSP++SGAVNEYCDGMGITPPVLET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KVEEN 128
           ED KVEEN
Sbjct: 121 EDTKVEEN 123

BLAST of HG10010979 vs. ExPASy TrEMBL
Match: A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.2e-47
Identity = 102/124 (82.26%), Postives = 109/124 (87.90%), Query Frame = 0

Query: 1   MSKSVQFFGFFLCALAISSSIQ--SAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEI 60
           M KSV+F GF L ALAISSSIQ  SAFA+R IPEA+ SADWSAA CWDAI AVEGC+DEI
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DMAMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVL 120
           DMAMKSNEIEVS DCCR ILHGLP+KC A VFSSGGEFS EISGAVNEYCDGMGITPPVL
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

Query: 121 ETED 123
           ET++
Sbjct: 121 ETDE 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0038539.15.2e-5283.59hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136... [more]
XP_022931003.16.5e-4782.26uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet... [more]
KAG6571831.12.7e-4581.36hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652857.15.0e-2388.52hypothetical protein Csa_023774, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TB282.5e-5283.59Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A0A0LEG08.0e-5181.25Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040... [more]
A0A6J1EX443.2e-4782.26uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 44..109
e-value: 7.1E-9
score: 35.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010979.1HG10010979.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity