HG10010642 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010642
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	major pollen allergen Ole e 6-like
Location	Chr06: 24335106 .. 24336233 (+)
RNA-Seq Expression	HG10010642
Synteny	HG10010642

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGAAAATGATTGCAGTGGTTTTGATGTGCATTGTGGTGGTGGCTGCTTTGCAGTTTACCACTGCCAATGCTGAAGACATAGAGGCCAAATTTGATGCTAAATTCAAGTCTTGCTATGAAACTTGTGAGAAGGAATGTCTTGAAAGTGGCAATGGCCAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAGGAAGTTGCTGGTATTCTTTCTTTTCTCTTTAATTATCTCTCTTTTTTCCCTTCATTTTAATAACTATAAGTTTAAGTTTTTGAATCAATCGGATATGGTATCTGATATGAACCATTCAGTCATCAAATTGTTAATTAAATTTAGATGTAATTTTAGTATTTTTCTAATTTTTTCATTTTTATGAAAGTAGGAGTAATTTTGTCTTTTTACTATGATGTATTAGAGTTTTTATGGAGAGACTATTTAAGCCTTGCTATTAGGTTGTTTGGAGGTAAGTTTTACGATGAATCAAATTTGGCCTTTGTGCTTCTTTCTAGCCTAGAGAAGTAACATTCAAGTGAGATTGATTTGTGCTTCTTTCTAGCCTAGAGAAGTAACATTCAAGTGAGATTGATCATCTTATCTTGTGGAGTGTTCGAATCTTCAGTTAAGAATTTTTTCATTGTCTCAAGATATTTGATCTTAAGGCAATCCGTGTCTATCTCAATCCTTAAGGTTGAGATCGAGTTGATTTGGAGGTTTTAGTGATTGAAAATTAGGGGTTCTCAAAACAAAAGAGTTTCTAATTTCAATTAGCTAGAGTTTTCATATCAGTATCACAGACTCTCTAATATCATTTTCCTCTCCAATTAATATTGATTTTTAGATTTTGGGTTAATCGTCAGTTATTTAACATGCATGGTATCAAAGTATGAGATCCTGTGTTCAGTGTTATTTCTTCTGATTTCCACTTGTGGGGTCTTTTTTACAAATTTTTCAAATCCAGAAATGAGAGGAAGTGTGTTAAAATGTTGACATAATATTACTTTCACTCATAAGTTGTCAATCGATGATTCAACAAATGGTTGCATTTTTAATGACAAATTTGAAATTTGTTGTATTTGTTTTGCAGATAAGCTCCACATCAACCTAGCACATTGA

mRNA sequence

ATGGGGAAGAAAATGATTGCAGTGGTTTTGATGTGCATTGTGGTGGTGGCTGCTTTGCAGTTTACCACTGCCAATGCTGAAGACATAGAGGCCAAATTTGATGCTAAATTCAAGTCTTGCTATGAAACTTGTGAGAAGGAATGTCTTGAAAGTGGCAATGGCCAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAGGAAGTTGCTGATAAGCTCCACATCAACCTAGCACATTGA

Coding sequence (CDS)

ATGGGGAAGAAAATGATTGCAGTGGTTTTGATGTGCATTGTGGTGGTGGCTGCTTTGCAGTTTACCACTGCCAATGCTGAAGACATAGAGGCCAAATTTGATGCTAAATTCAAGTCTTGCTATGAAACTTGTGAGAAGGAATGTCTTGAAAGTGGCAATGGCCAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAGGAAGTTGCTGATAAGCTCCACATCAACCTAGCACATTGA

Protein sequence

MGKKMIAVVLMCIVVVAALQFTTANAEDIEAKFDAKFKSCYETCEKECLESGNGQSFCEVKCDEDCDEKEVADKLHINLAH

Homology

[Close]

BLAST of HG10010642 vs. NCBI nr
Match: XP_038906682.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 137.1 bits (344), Expect = 6.7e-29
Identity = 70/83 (84.34%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  MGKKMIAVVLMCIVVVAALQFTTANAE--DIEAKFDAKFKSCYETCEKECLESGNGQSFC 60
          M KKMIAV LMCIVV+AALQFTTAN E    EAKFDAK+KSCYETCEKECLE GNGQSFC
Sbjct: 1  MAKKMIAVFLMCIVVMAALQFTTANEEVAKYEAKFDAKYKSCYETCEKECLEKGNGQSFC 60

Query: 61 EVKCDEDCDEKEVADKLHINLAH 82
          EVKCDEDCDEKE ADKLHI  AH
Sbjct: 61 EVKCDEDCDEKETADKLHIKPAH 83

[Close]

BLAST of HG10010642 vs. NCBI nr
Match: XP_038891517.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 2.1e-27
Identity = 66/82 (80.49%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1  MGKKMIAVVLMCIVVVAALQFTTANAEDI---EAKFDAKFKSCYETCEKECLESGNGQSF 60
          M KKM+AV LMCIVVVAALQF TAN +++   EAKFDAK+KSCYETCEKECL +G+GQSF
Sbjct: 1  MAKKMMAVFLMCIVVVAALQFATANEDEVTKYEAKFDAKYKSCYETCEKECLANGSGQSF 60

Query: 61 CEVKCDEDCDEKEVADKLHINL 80
          CEVKCDEDCDEKEVADKLHI L
Sbjct: 61 CEVKCDEDCDEKEVADKLHIKL 82

[Close]

BLAST of HG10010642 vs. NCBI nr
Match: XP_038875643.1 (major pollen allergen Ole e 6-like [Benincasa hispida] >XP_038906512.1 major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 128.3 bits (321), Expect = 3.1e-26
Identity = 65/81 (80.25%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MGKKMIAVVLMCIVVVAALQFTTANAE--DIEAKFDAKFKSCYETCEKECLESGNGQSFC 60
          M KKMIAV  MCIVV+AALQF TAN E    EAKFDAK+KSCYETCEKECLE+G+GQ+FC
Sbjct: 1  MAKKMIAVFFMCIVVMAALQFATANEEVDKYEAKFDAKYKSCYETCEKECLENGSGQTFC 60

Query: 61 EVKCDEDCDEKEVADKLHINL 80
          EVKCDEDCDEKE ADKLHI L
Sbjct: 61 EVKCDEDCDEKEKADKLHIEL 81

[Close]

BLAST of HG10010642 vs. NCBI nr
Match: XP_038906677.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 5.3e-26
Identity = 64/81 (79.01%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1  MGKKMIAVVLMCIVVVAALQFTTAN--AEDIEAKFDAKFKSCYETCEKECLESGNGQSFC 60
          M KK+IAV  MCIVV+AA QF TAN   E  EAKF+AK+KSCYETCEKECLE GNGQSFC
Sbjct: 1  MAKKIIAVFFMCIVVMAAFQFATANEEVEKYEAKFEAKYKSCYETCEKECLEGGNGQSFC 60

Query: 61 EVKCDEDCDEKEVADKLHINL 80
          EVKCDEDCDEKE ADKLHI L
Sbjct: 61 EVKCDEDCDEKETADKLHIEL 81

[Close]

BLAST of HG10010642 vs. NCBI nr
Match: XP_008456958.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo] >KAA0066995.1 major pollen allergen Ole e 6-like [Cucumis melo var. makuwa] >TYJ96804.1 major pollen allergen Ole e 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 5.3e-26
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MGKKMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESGNGQS 60
          M KKMIA+ LMCIVVVAALQF +AN ED     EAKFDAK+KSC++TCEKECLE+G+GQS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHINL 80
          +CEVKCDEDC+EKEVADKLHI L
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]

BLAST of HG10010642 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-09
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 34 DAKFKSCYETCEKECLESGNGQSFCEVKCDEDCDEKEVADKL 76
          +A+FK CY+TC KEC + GNG +FCE+KCD DC  K+V +KL
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKL 43

[Close]

BLAST of HG10010642 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MGKKMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESGNGQS 60
          M KKMIA+ LMCIVVVAALQF +AN ED     EAKFDAK+KSC++TCEKECLE+G+GQS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHINL 80
          +CEVKCDEDC+EKEVADKLHI L
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]

BLAST of HG10010642 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MGKKMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESGNGQS 60
          M KKMIA+ LMCIVVVAALQF +AN ED     EAKFDAK+KSC++TCEKECLE+G+GQS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHINL 80
          +CEVKCDEDC+EKEVADKLHI L
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]

BLAST of HG10010642 vs. ExPASy TrEMBL
Match: A0A0A0KPA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.4e-26
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MGKKMIAVVLMCIVVVAALQFTTANAEDI---EAKFDAKFKSCYETCEKECLESGNGQSF 60
          M  KMIA+ LMCIVVVAALQF  AN ED+   EAKFDAK+KSC+ETCEKECL  G+GQS+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSY 60

Query: 61 CEVKCDEDCDEKEVADKLHINL 80
          CEVKCDEDCDEKE ADKLHI L
Sbjct: 61 CEVKCDEDCDEKEAADKLHIEL 82

[Close]

BLAST of HG10010642 vs. ExPASy TrEMBL
Match: A0A0A0K9Z9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.1e-24
Identity = 63/84 (75.00%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1  MGKKMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESG-NGQ 60
          M KKM+AV LMCIVVVA LQF  AN ED     EAKFDAK+KSCYETCEKECL +  NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKEVADKLHINL 80
          SFCEVKCDEDC EKE ADKLHI L
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIEL 84

[Close]

BLAST of HG10010642 vs. ExPASy TrEMBL
Match: A0A5D3DM52 (Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002640 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 60/86 (69.77%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 1  MGKKMIAVVLMCIVVVAALQFTTANAED----IEAKFDAKFKSCYETCEKECLESG-NGQ 60
          M KKM+ V+L+CIVV+AAL+F+ AN E+     E+KFDAK+KSCYE+CEKECL++G NGQ
Sbjct: 1  MAKKMMGVLLICIVVMAALEFSIANGEEKKDKYESKFDAKYKSCYESCEKECLQNGNNGQ 60

Query: 61 SFCEVKCDEDCDEKEVADKLHINLAH 82
          SFCEVKCDEDCDEKEVADKL I+ A+
Sbjct: 61 SFCEVKCDEDCDEKEVADKLRIDPAN 86

The following BLAST results are available for this feature:

BLAST of HG10010642 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906682.1	6.7e-29	84.34	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_038891517.1	2.1e-27	80.49	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_038875643.1	3.1e-26	80.25	major pollen allergen Ole e 6-like [Benincasa hispida] >XP_038906512.1 major pol...	[more]
XP_038906677.1	5.3e-26	79.01	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_008456958.1	5.3e-26	77.11	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo] >KAA0066995.1 major...	[more]

BLAST of HG10010642 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24172	2.1e-09	59.52	Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1	[more]

BLAST of HG10010642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCS2	2.6e-26	77.11	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C530	2.6e-26	77.11	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ...	[more]
A0A0A0KPA7	7.4e-26	76.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1	[more]
A0A0A0K9Z9	9.1e-24	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106720 PE=4 SV=1	[more]
A0A5D3DM52	2.6e-23	69.77	Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of HG10010642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 33..78 e-value: 8.0E-17 score: 62.5
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 34..75
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole_e_6	coord: 40..76 e-value: 1.2E-13 score: 50.7
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	MAJOR POLLEN ALLERGEN OLE E 6-LIKE	coord: 1..79
None	No IPR available	PANTHER	PTHR35632:SF5	SUBFAMILY NOT NAMED	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010642.1	HG10010642.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016121	carotene catabolic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0010223	secondary shoot formation
biological_process	GO:1901601	strigolactone biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen