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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGATACGACAGATCGTTATAACGACGAACCGCCCAGGTTGCGTCAAGGAAGAATTGCGTGTAGCGAGTCGCGATTGTGAATTCGTCTCTCGAAAATTTCACGGCCAAAGCCCTGAGCCCTCTCATGTAAGACTGCAACCTCATCATGTCGACATTCCAGTTCCAGCTTCAACTTCAATTCGTCGGTCCCACATTGATTCTTCGCGCTTAAGCAAAATAATCTGGTTTACGAGACACCGATTCGTTCGTAGAGGAGTTTCTACTGGGAGTTCTTCAGATTTATTGCTATATTTTGTCTTCAATTGA mRNA sequence ATGATACGACAGATCGTTATAACGACGAACCGCCCAGGTTGCGTCAAGGAAGAATTGCGTGTAGCGAGTCGCGATTGTGAATTCGTCTCTCGAAAATTTCACGGCCAAAGCCCTGAGCCCTCTCATGTAAGACTGCAACCTCATCATGTCGACATTCCAGTTCCAGCTTCAACTTCAATTCGTCGGTCCCACATTGATTCTTCGCGCTTAAGCAAAATAATCTGGTTTACGAGACACCGATTCGTTCGTAGAGGAGTTTCTACTGGGAGTTCTTCAGATTTATTGCTATATTTTGTCTTCAATTGA Coding sequence (CDS) ATGATACGACAGATCGTTATAACGACGAACCGCCCAGGTTGCGTCAAGGAAGAATTGCGTGTAGCGAGTCGCGATTGTGAATTCGTCTCTCGAAAATTTCACGGCCAAAGCCCTGAGCCCTCTCATGTAAGACTGCAACCTCATCATGTCGACATTCCAGTTCCAGCTTCAACTTCAATTCGTCGGTCCCACATTGATTCTTCGCGCTTAAGCAAAATAATCTGGTTTACGAGACACCGATTCGTTCGTAGAGGAGTTTCTACTGGGAGTTCTTCAGATTTATTGCTATATTTTGTCTTCAATTGA Protein sequence MIRQIVITTNRPGCVKEELRVASRDCEFVSRKFHGQSPEPSHVRLQPHHVDIPVPASTSIRRSHIDSSRLSKIIWFTRHRFVRRGVSTGSSSDLLLYFVFN
Homology
BLAST of HG10010392 vs. NCBI nr
Match: KGN47396.1 (hypothetical protein Csa_023027 [Cucumis sativus]) HSP 1 Score: 100.9 bits (250), Expect = 6.6e-18 Identity = 52/72 (72.22%), Postives = 56/72 (77.78%), Query Frame = 0
Query: 1 MIRQIVITTNRPGCVKEELRVASRDCEFVSRKFHGQSPEPSHVRLQPHHVDIPVPASTSI 60
M RQIV T NR +++LRVASRDCEF RK HGQSPE + RLQPHHVDI VPASTSI
Sbjct: 1 MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI 60
Query: 61 RRSHIDSSRLSK 73
RSHI SSRLSK
Sbjct: 61 LRSHIHSSRLSK 72
BLAST of HG10010392 vs. NCBI nr
Match: TYK02941.1 (AMSH-like ubiquitin thioesterase 3 [Cucumis melo var. makuwa]) HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10 Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 0
Query: 1 MIRQIVITTNRPGCVKEELRVASRDCEFVSRKFHGQSPEPSHVRLQPHHVDI 53
M RQIV TTNR +++LRVAS DCEF SRKFHGQSPE S RLQPHHVDI
Sbjct: 1 MTRQIVKTTNRQVGSRKKLRVASLDCEFASRKFHGQSPESSPTRLQPHHVDI 52
BLAST of HG10010392 vs. ExPASy TrEMBL
Match: A0A0A0KHZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G311010 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 3.2e-18 Identity = 52/72 (72.22%), Postives = 56/72 (77.78%), Query Frame = 0
Query: 1 MIRQIVITTNRPGCVKEELRVASRDCEFVSRKFHGQSPEPSHVRLQPHHVDIPVPASTSI 60
M RQIV T NR +++LRVASRDCEF RK HGQSPE + RLQPHHVDI VPASTSI
Sbjct: 1 MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI 60
Query: 61 RRSHIDSSRLSK 73
RSHI SSRLSK
Sbjct: 61 LRSHIHSSRLSK 72
BLAST of HG10010392 vs. ExPASy TrEMBL
Match: A0A5D3BT78 (AMSH-like ubiquitin thioesterase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00210 PE=3 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 6.5e-11 Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 0
Query: 1 MIRQIVITTNRPGCVKEELRVASRDCEFVSRKFHGQSPEPSHVRLQPHHVDI 53
M RQIV TTNR +++LRVAS DCEF SRKFHGQSPE S RLQPHHVDI
Sbjct: 1 MTRQIVKTTNRQVGSRKKLRVASLDCEFASRKFHGQSPESSPTRLQPHHVDI 52
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN47396.1 | 6.6e-18 | 72.22 | hypothetical protein Csa_023027 [Cucumis sativus] | [more] |
| TYK02941.1 | 1.3e-10 | 73.08 | AMSH-like ubiquitin thioesterase 3 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KHZ7 | 3.2e-18 | 72.22 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G311010 PE=4 SV=1 | [more] |
| A0A5D3BT78 | 6.5e-11 | 73.08 | AMSH-like ubiquitin thioesterase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0070536 |
protein K63-linked deubiquitination |
| molecular_function |
GO:0070122 |
isopeptidase activity |
| molecular_function |
GO:0061578 |
Lys63-specific deubiquitinase activity |
| molecular_function |
GO:0008237 |
metallopeptidase activity |
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