HG10006941 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006941
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L18
Location	Chr07: 23440281 .. 23440625 (-)
RNA-Seq Expression	HG10006941
Synteny	HG10006941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATTCCCCCTCCAGTTAAGACAGCAAGATTAACCCAATATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAATAAGTATGTGAGTGCCCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGTTCACAGGAGAAGGCACTGCGATTGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTGAAAGCTGTTGTTGATTCTGTGAGAGAAGCAGGAATTAAGCTGCTTTGA

mRNA sequence

ATGGTGATTCCCCCTCCAGTTAAGACAGCAAGATTAACCCAATATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAATAAGTATGTGAGTGCCCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGTTCACAGGAGAAGGCACTGCGATTGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTGAAAGCTGTTGTTGATTCTGTGAGAGAAGCAGGAATTAAGCTGCTTTGA

Coding sequence (CDS)

ATGGTGATTCCCCCTCCAGTTAAGACAGCAAGATTAACCCAATATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAATAAGTATGTGAGTGCCCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGTTCACAGGAGAAGGCACTGCGATTGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTGAAAGCTGTTGTTGATTCTGTGAGAGAAGCAGGAATTAAGCTGCTTTGA

Protein sequence

MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL

Homology

[Close]

BLAST of HG10006941 vs. NCBI nr
Match: XP_022145949.1 (uncharacterized protein LOC111015286 [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-49
Identity = 109/114 (95.61%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPPPV+ AR+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of HG10006941 vs. NCBI nr
Match: KAG6590442.1 (hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023978.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.1 bits (518), Expect = 6.2e-49
Identity = 109/114 (95.61%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of HG10006941 vs. NCBI nr
Match: XP_022961444.1 (uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 uncharacterized protein LOC111462025 [Cucurbita moschata])

HSP 1 Score: 203.8 bits (517), Expect = 8.2e-49
Identity = 109/114 (95.61%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of HG10006941 vs. NCBI nr
Match: XP_022968817.1 (uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968820.1 uncharacterized protein LOC111467940 [Cucurbita maxima])

HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of HG10006941 vs. NCBI nr
Match: XP_023515963.1 (uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 2.4e-48
Identity = 107/114 (93.86%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPPPV+  RLTQYLKPY+LKMHFTNKYVSAQVIHS+TATVASAASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYILKMHFTNKYVSAQVIHSKTATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of HG10006941 vs. ExPASy Swiss-Prot
Match: P52863 (50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-10
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 21  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T ++V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+  V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of HG10006941 vs. ExPASy Swiss-Prot
Match: A8IAP8 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rplR PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 21  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K++ AQ+I         AASS EK LR S+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ AV V  +    YHG+VKA+ +  RE G++
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]

BLAST of HG10006941 vs. ExPASy Swiss-Prot
Match: B7VLE1 (50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 21  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T ++V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVISANGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ +V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVASVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of HG10006941 vs. ExPASy Swiss-Prot
Match: B6EPU1 (50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 21  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T ++  AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           GI  V       Q YHG+V A+ DS REAG+K
Sbjct: 86  GITNVAFDRSGFQ-YHGRVAALADSAREAGLK 116

[Close]

BLAST of HG10006941 vs. ExPASy Swiss-Prot
Match: A7MWH4 (50S ribosomal protein L18 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=338187 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 21  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T ++V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ AV       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVTAVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of HG10006941 vs. ExPASy TrEMBL
Match: A0A6J1CWR7 (uncharacterized protein LOC111015286 OS=Momordica charantia OX=3673 GN=LOC111015286 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 109/114 (95.61%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPPPV+ AR+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of HG10006941 vs. ExPASy TrEMBL
Match: A0A6J1HE21 (uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC111462025 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.0e-49
Identity = 109/114 (95.61%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of HG10006941 vs. ExPASy TrEMBL
Match: A0A6J1I0R8 (uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.8e-49
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of HG10006941 vs. ExPASy TrEMBL
Match: A0A6J1HZV8 (uncharacterized protein LOC111469142 OS=Cucurbita maxima OX=3661 GN=LOC111469142 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+KAV+DSVREAGIKLL
Sbjct: 61  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 114

[Close]

BLAST of HG10006941 vs. ExPASy TrEMBL
Match: A0A5D3DYC1 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00840 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPPP+K  RL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALR SMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of HG10006941 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-41
Identity = 87/114 (76.32%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMEST 60
           MVIPP V+  RL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVKAV+DSVREAG+KLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]

BLAST of HG10006941 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.7e-10
Identity = 32/101 (31.68%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 11  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIG 70
           R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R ++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           KL+ ER +   + AV    ++ ++  GK+  V+D+++E GI
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of HG10006941 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 50.8 bits (120), Expect = 8.2e-07
Identity = 28/101 (27.72%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 11  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIG 70
           R   Y++P+ L +  + ++VSA + H  T    + A +  K ++  + S  D+ A   IG
Sbjct: 82  RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 141

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           ++L ER     +       + + K+ GK++AVV S+ + GI
Sbjct: 142 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of HG10006941 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 50.8 bits (120), Expect = 8.2e-07
Identity = 28/101 (27.72%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 11  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIG 70
           R   Y++P+ L +  + ++VSA + H  T    + A +  K ++  + S  D+ A   IG
Sbjct: 127 RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 186

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           ++L ER     +       + + K+ GK++AVV S+ + GI
Sbjct: 187 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of HG10006941 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 29/96 (30.21%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 18  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERL 77
           P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R 
Sbjct: 197 PFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAVLAQRS 256

Query: 78  LLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKL 114
           L   I  V    ++  K  GK++ V+ ++ + G+ +
Sbjct: 257 LEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNV 292

The following BLAST results are available for this feature:

BLAST of HG10006941 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145949.1	2.1e-49	95.61	uncharacterized protein LOC111015286 [Momordica charantia]	[more]
KAG6590442.1	6.2e-49	95.61	hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961444.1	8.2e-49	95.61	uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 unchar...	[more]
XP_022968817.1	1.8e-48	94.74	uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharac...	[more]
XP_023515963.1	2.4e-48	93.86	uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10006941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52863	5.9e-10	44.57	50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1	[more]
A8IAP8	1.0e-09	43.48	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
B7VLE1	1.0e-09	43.48	50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR ...	[more]
B6EPU1	1.3e-09	45.65	50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 G...	[more]
A7MWH4	1.3e-09	44.57	50S ribosomal protein L18 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX...	[more]

BLAST of HG10006941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWR7	1.0e-49	95.61	uncharacterized protein LOC111015286 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1HE21	4.0e-49	95.61	uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A6J1I0R8	8.8e-49	94.74	uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940...	[more]
A0A6J1HZV8	1.5e-48	92.98	uncharacterized protein LOC111469142 OS=Cucurbita maxima OX=3661 GN=LOC111469142...	[more]
A0A5D3DYC1	2.0e-48	93.86	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of HG10006941 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27820.1	1.0e-41	76.32	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	4.7e-10	31.68	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	8.2e-07	27.72	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	8.2e-07	27.72	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	2.0e-05	30.21	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 8..113 e-value: 2.0E-24 score: 88.2
None	No IPR available	PANTHER	PTHR12899:SF15	OS01G0256600 PROTEIN	coord: 1..114
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 11..111 e-value: 1.40689E-26 score: 92.6031
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 11..111
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 20..113 e-value: 1.3E-17 score: 64.2
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006941.1	HG10006941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome