HG10006837 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006837
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SEC12-like protein 2
Location	Chr07: 22428576 .. 22429097 (-)
RNA-Seq Expression	HG10006837
Synteny	HG10006837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTCCCGAACCTTACAATTCCCGCAAGTATGGCATCCCTTTCTATGCAGCCGCTTGGGTGCCTTCCACTTCTCTCAAATCCCAGGACGAACCTCCAGAATCTGAAAATCATCGAGATCAATCCGGTGATTCTGACATTTCCGCCGACGACAACAAATCACTTCCATCTCACCCCGCCACCGCTGTTAATTACTACGTAGCCGCCGCTGGAGGTGGTGGAGAAGGTCGGAGTGGAATTTCCAATGCCCTCATACTCGCTCATTTCGATTTTGAATCCCGCTCGCTCTCTGATCAGCCTGTAAACTCTCTCTCTGTTCCTTGGTGGTTATTTCTCGTGTTTGAGTTTTTCTTTTCCGGTAAATGCTTGGTGTTGTTTGTCATTTCGTCTATGTTATTGAGTGAAGCAGAAATGGAGAGGGGTTATGAATTGTTTTCGATTGTTGATTCTCTTGCTGATTCTGTGCTATATGCTACTATCTTTAAATTTATTATCCCGTTTGATATGTTTTTTTGGTGA

mRNA sequence

ATGGAAACTCCCGAACCTTACAATTCCCGCAAGTATGGCATCCCTTTCTATGCAGCCGCTTGGGTGCCTTCCACTTCTCTCAAATCCCAGGACGAACCTCCAGAATCTGAAAATCATCGAGATCAATCCGGTGATTCTGACATTTCCGCCGACGACAACAAATCACTTCCATCTCACCCCGCCACCGCTGTTAATTACTACGTAGCCGCCGCTGGAGGTGGTGGAGAAGGTCGGAGTGGAATTTCCAATGCCCTCATACTCGCTCATTTCGATTTTGAATCCCGCTCGCTCTCTGATCAGCCTGTAAACTCTCTCTCTGTTCCTTGGTGGTTATTTCTCGTGTTTGAGTTTTTCTTTTCCGGTAAATGCTTGGTGTTGTTTGTCATTTCGTCTATGTTATTGAGTGAAGCAGAAATGGAGAGGGGTTATGAATTGTTTTCGATTGTTGATTCTCTTGCTGATTCTGTGCTATATGCTACTATCTTTAAATTTATTATCCCGTTTGATATGTTTTTTTGGTGA

Coding sequence (CDS)

ATGGAAACTCCCGAACCTTACAATTCCCGCAAGTATGGCATCCCTTTCTATGCAGCCGCTTGGGTGCCTTCCACTTCTCTCAAATCCCAGGACGAACCTCCAGAATCTGAAAATCATCGAGATCAATCCGGTGATTCTGACATTTCCGCCGACGACAACAAATCACTTCCATCTCACCCCGCCACCGCTGTTAATTACTACGTAGCCGCCGCTGGAGGTGGTGGAGAAGGTCGGAGTGGAATTTCCAATGCCCTCATACTCGCTCATTTCGATTTTGAATCCCGCTCGCTCTCTGATCAGCCTGTAAACTCTCTCTCTGTTCCTTGGTGGTTATTTCTCGTGTTTGAGTTTTTCTTTTCCGGTAAATGCTTGGTGTTGTTTGTCATTTCGTCTATGTTATTGAGTGAAGCAGAAATGGAGAGGGGTTATGAATTGTTTTCGATTGTTGATTCTCTTGCTGATTCTGTGCTATATGCTACTATCTTTAAATTTATTATCCCGTTTGATATGTTTTTTTGGTGA

Protein sequence

METPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQSGDSDISADDNKSLPSHPATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPVNSLSVPWWLFLVFEFFFSGKCLVLFVISSMLLSEAEMERGYELFSIVDSLADSVLYATIFKFIIPFDMFFW

Homology

[Close]

BLAST of HG10006837 vs. NCBI nr
Match: XP_038892140.1 (SEC12-like protein 2 [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-43
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   METPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQSGDSDISADDNKSLPSHP 60
           ME P+P NSRKYGIPFYA AW+PSTSLKSQ EPPESENH DQS D+DISADDNKSLPSHP
Sbjct: 1   MEAPQPSNSRKYGIPFYAVAWLPSTSLKSQQEPPESENHSDQSADADISADDNKSLPSHP 60

Query: 61  ATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
           ATA NYYVAA GGGGEGRSGISNALILAHFDFESRSLSDQPV
Sbjct: 61  ATADNYYVAATGGGGEGRSGISNALILAHFDFESRSLSDQPV 102

[Close]

BLAST of HG10006837 vs. NCBI nr
Match: KAG6601644.1 (SEC12-like protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032403.1 SEC12-like protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.8 bits (434), Expect = 5.2e-39
Identity = 87/102 (85.29%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   METPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQSGDSDISADDNKSLPSHP 60
           ME PEP NSRKYG+PFYAAAWVPS SLKS+ E PESE  RDQSGD D+ ADD K+LPSHP
Sbjct: 1   MEAPEPSNSRKYGVPFYAAAWVPSISLKSEKESPESEIDRDQSGDGDVFADD-KTLPSHP 60

Query: 61  ATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
            TAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV
Sbjct: 61  TTAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 101

[Close]

BLAST of HG10006837 vs. NCBI nr
Match: XP_023547354.1 (SEC12-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.5 bits (423), Expect = 9.8e-38
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   METPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQS--GDSDISADDNKSLPS 60
           ME PEP NSRKYG+PFYAAAWVPS SLKS+ E PESE  RDQS  GD D+SADD K+ PS
Sbjct: 1   MEAPEPSNSRKYGVPFYAAAWVPSISLKSEKESPESEIDRDQSGDGDGDVSADD-KTFPS 60

Query: 61  HPATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
           HP TAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV
Sbjct: 61  HPTTAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103

[Close]

BLAST of HG10006837 vs. NCBI nr
Match: XP_022957331.1 (SEC12-like protein 2 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-37
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   METPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQSGDSDISADDNKSLPSHP 60
           ME PE  NSRKYG+PFYAAAWVPS SLKS+ E PESE  RDQSGD D+SA+D ++LPSHP
Sbjct: 1   MEAPESSNSRKYGVPFYAAAWVPSISLKSEKESPESEIDRDQSGDGDVSAED-ETLPSHP 60

Query: 61  ATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
            TAV+YYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV
Sbjct: 61  TTAVSYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 101

[Close]

BLAST of HG10006837 vs. NCBI nr
Match: XP_022998007.1 (SEC12-like protein 2 [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 3.7e-37
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   METPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQS--GDSDISADDNKSLPS 60
           ME PEP NSRKYG+PFYAAAWVPS SLKS+ E  ESE  RDQS  GD D+SADD K+LPS
Sbjct: 1   MEAPEPSNSRKYGVPFYAAAWVPSISLKSEQESLESEIDRDQSGDGDGDVSADD-KTLPS 60

Query: 61  HPATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
           HP TAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV
Sbjct: 61  HPTTAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103

[Close]

BLAST of HG10006837 vs. ExPASy Swiss-Prot
Match: Q39221 (SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4)

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 2   ETPEPYNSRKYGIPFYAAAWVPSTSLKSQ--DEPPESENHRDQSGDSDISADDNKSLPSH 61
           ET +P N + YG+P YAA W+P   ++S+   +P +SE+  + S  S  S          
Sbjct: 7   ETNQPSNMQTYGVPIYAADWIPEVDVRSKIIMDPEKSEDDDESSSSSSSSRS-------- 66

Query: 62  PATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPVNSLSV 108
                   +  +GGGGEGRSGISN +++   D  + SLS+QP+  L V
Sbjct: 67  -------CIVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVV 99

[Close]

BLAST of HG10006837 vs. ExPASy TrEMBL
Match: A0A6J1GYX6 (SEC12-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111458762 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   METPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQSGDSDISADDNKSLPSHP 60
           ME PE  NSRKYG+PFYAAAWVPS SLKS+ E PESE  RDQSGD D+SA+D ++LPSHP
Sbjct: 1   MEAPESSNSRKYGVPFYAAAWVPSISLKSEKESPESEIDRDQSGDGDVSAED-ETLPSHP 60

Query: 61  ATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
            TAV+YYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV
Sbjct: 61  TTAVSYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 101

[Close]

BLAST of HG10006837 vs. ExPASy TrEMBL
Match: A0A6J1K6N4 (SEC12-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111492787 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   METPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQS--GDSDISADDNKSLPS 60
           ME PEP NSRKYG+PFYAAAWVPS SLKS+ E  ESE  RDQS  GD D+SADD K+LPS
Sbjct: 1   MEAPEPSNSRKYGVPFYAAAWVPSISLKSEQESLESEIDRDQSGDGDGDVSADD-KTLPS 60

Query: 61  HPATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
           HP TAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV
Sbjct: 61  HPTTAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103

[Close]

BLAST of HG10006837 vs. ExPASy TrEMBL
Match: A0A5A7VE72 (SEC12-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00330 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 5.4e-34
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   METPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQSGDSDISADDNKSLPSHP 60
           METPEP NSRKYG+PFYAAAW PSTSLKS+ +P +SE+   QS D+DISA DNKS+PSH 
Sbjct: 1   METPEPSNSRKYGVPFYAAAWFPSTSLKSEHQPSQSEDPPHQSADADISAADNKSVPSHL 60

Query: 61  ATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
           A   +YYVAAAGGGGEGRSGISNALILAHFDF+SRSLSD PV
Sbjct: 61  A---SYYVAAAGGGGEGRSGISNALILAHFDFDSRSLSDHPV 99

[Close]

BLAST of HG10006837 vs. ExPASy TrEMBL
Match: A0A1S3C056 (SEC12-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103495101 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 5.4e-34
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   METPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQSGDSDISADDNKSLPSHP 60
           METPEP NSRKYG+PFYAAAW PSTSLKS+ +P +SE+   QS D+DISA DNKS+PSH 
Sbjct: 1   METPEPSNSRKYGVPFYAAAWFPSTSLKSEHQPSQSEDPPHQSADADISAADNKSVPSHL 60

Query: 61  ATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
           A   +YYVAAAGGGGEGRSGISNALILAHFDF+SRSLSD PV
Sbjct: 61  A---SYYVAAAGGGGEGRSGISNALILAHFDFDSRSLSDHPV 99

[Close]

BLAST of HG10006837 vs. ExPASy TrEMBL
Match: A0A6J1DBY0 (SEC12-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111019619 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 7.1e-34
Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 2   ETPEPYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQSGDSDISADDNKSLPSHPA 61
           +TP+P NSRKYG+PFYAAAW+P TS+KS+DEPP SEN  +QSG      DD+KSLP    
Sbjct: 5   DTPDPSNSRKYGVPFYAAAWIPPTSVKSEDEPPPSENDPNQSG------DDDKSLPPPQT 64

Query: 62  TAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
           TAV+YYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV
Sbjct: 65  TAVDYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 99

[Close]

BLAST of HG10006837 vs. TAIR 10
Match: AT2G01470.1 (SEC12P-like 2 protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 2   ETPEPYNSRKYGIPFYAAAWVPSTSLKSQ--DEPPESENHRDQSGDSDISADDNKSLPSH 61
           ET +P N + YG+P YAA W+P   ++S+   +P +SE+  + S  S  S          
Sbjct: 7   ETNQPSNMQTYGVPIYAADWIPEVDVRSKIIMDPEKSEDDDESSSSSSSSRS-------- 66

Query: 62  PATAVNYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPVNSLSV 108
                   +  +GGGGEGRSGISN +++   D  + SLS+QP+  L V
Sbjct: 67  -------CIVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVV 99

[Close]

BLAST of HG10006837 vs. TAIR 10
Match: AT5G50550.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-09
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 6   PYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQSGDSDISADDNKSLPSHPATAVN 65
           P N + YG+P YA  W+        +E   S+  +DQ  D     DD  S  S       
Sbjct: 8   PSNLQTYGVPIYAVDWI-------LEEAVRSKITKDQDDDD----DDGSSSSS------- 67

Query: 66  YYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
            Y+  +GGGGEGRSGI N +++   D  + SLS+QP+
Sbjct: 68  -YIVLSGGGGEGRSGIPNVILICRVDLHTNSLSEQPI 85

[Close]

BLAST of HG10006837 vs. TAIR 10
Match: AT5G50650.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-09
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 6   PYNSRKYGIPFYAAAWVPSTSLKSQDEPPESENHRDQSGDSDISADDNKSLPSHPATAVN 65
           P N + YG+P YA  W+        +E   S+  +DQ  D     DD  S  S       
Sbjct: 8   PSNLQTYGVPIYAVDWI-------LEEAVRSKITKDQDDDD----DDGSSSSS------- 67

Query: 66  YYVAAAGGGGEGRSGISNALILAHFDFESRSLSDQPV 103
            Y+  +GGGGEGRSGI N +++   D  + SLS+QP+
Sbjct: 68  -YIVLSGGGGEGRSGIPNVILICRVDLHTNSLSEQPI 85

The following BLAST results are available for this feature:

BLAST of HG10006837 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892140.1	3.5e-43	89.22	SEC12-like protein 2 [Benincasa hispida]	[more]
KAG6601644.1	5.2e-39	85.29	SEC12-like protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG703240...	[more]
XP_023547354.1	9.8e-38	83.65	SEC12-like protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022957331.1	2.9e-37	82.35	SEC12-like protein 2 [Cucurbita moschata]	[more]
XP_022998007.1	3.7e-37	83.65	SEC12-like protein 2 [Cucurbita maxima]	[more]

BLAST of HG10006837 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39221	3.7e-11	36.11	SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4	[more]

BLAST of HG10006837 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYX6	1.4e-37	82.35	SEC12-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111458762 PE=4 SV=1	[more]
A0A6J1K6N4	1.8e-37	83.65	SEC12-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111492787 PE=4 SV=1	[more]
A0A5A7VE72	5.4e-34	77.45	SEC12-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120...	[more]
A0A1S3C056	5.4e-34	77.45	SEC12-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103495101 PE=4 SV=1	[more]
A0A6J1DBY0	7.1e-34	76.24	SEC12-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111019619 PE=4 SV=1	[more]

BLAST of HG10006837 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01470.1	2.6e-12	36.11	SEC12P-like 2 protein	[more]
AT5G50550.1	7.8e-09	36.08	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G50650.1	7.8e-09	36.08	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 58..113 e-value: 1.4E-5 score: 26.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..56
None	No IPR available	PANTHER	PTHR23284:SF5	SEC12P-LIKE 2 PROTEIN-RELATED	coord: 5..106
None	No IPR available	PANTHER	PTHR23284	PROLACTIN REGULATORY ELEMENT BINDING PROTEIN	coord: 5..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006837.1	HG10006837.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006817	phosphate ion transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding