HG10005539 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005539
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationChr07: 3462002 .. 3462952 (+)
RNA-Seq ExpressionHG10005539
SyntenyHG10005539
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTCATAGCAACTCTTCTGTCGCCGACAATTTTCAGTCCACCGTTCAATTTACCGAGAACTGGCGGGAAAGCATGCTGCCTGCGACTAGGCTGCACGGAGGGATATCGGAGAGTGACGATGAGAGGCGGAAGTGAAAACCGGAAGCCTCTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGCGAAGAATGATTTACAACAACTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTGATGCCTCTGCACTCGACTTTTGTGTTTATCGGTATCTTTGATTGATTAGTTATCGAACTCATTCGATATTGCTTGATCGGTATTGATTTTTAGACGTATCAACAGCAATGACGAGATATATATTTTTGCTTATTGTAATTCCTTCACTATTCCTTGCTGATATTCTGTATTACTTAACTTTCGATTTATGAGTGTTAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTTGCAATGGATTGTTCGAACAAGTACAAACTATTCATTCGTACTTGAAAGCAGAAACTGACTTAGCACCTGAAATTGAAGGGTTTAACGCTCTTTTGAAGGCCTTGGTTAGTTATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCTTTCAGGATTTTCATAAAAGGATTGGAATCAACGGCAGAGGCAGTTGATTTAAGAGCTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCGCTTGAGTTTCTAGAGGAAGAAGAAGAGGCAGCTACAGCCATATCTATGCACTGA

mRNA sequence

ATGAGTTTCATAGCAACTCTTCTGTCGCCGACAATTTTCAGTCCACCGTTCAATTTACCGAGAACTGGCGGGAAAGCATGCTGCCTGCGACTAGGCTGCACGGAGGGATATCGGAGAGTGACGATGAGAGGCGGAAGTGAAAACCGGAAGCCTCTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGCGAAGAATGATTTACAACAACTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTTGCAATGGATTGTTCGAACAAGTACAAACTATTCATTCGTACTTGAAAGCAGAAACTGACTTAGCACCTGAAATTGAAGGGTTTAACGCTCTTTTGAAGGCCTTGGTTAGTTATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCTTTCAGGATTTTCATAAAAGGATTGGAATCAACGGCAGAGGCAGTTGATTTAAGAGCTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCGCTTGAGTTTCTAGAGGAAGAAGAAGAGGCAGCTACAGCCATATCTATGCACTGA

Coding sequence (CDS)

ATGAGTTTCATAGCAACTCTTCTGTCGCCGACAATTTTCAGTCCACCGTTCAATTTACCGAGAACTGGCGGGAAAGCATGCTGCCTGCGACTAGGCTGCACGGAGGGATATCGGAGAGTGACGATGAGAGGCGGAAGTGAAAACCGGAAGCCTCTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGCGAAGAATGATTTACAACAACTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTTGCAATGGATTGTTCGAACAAGTACAAACTATTCATTCGTACTTGAAAGCAGAAACTGACTTAGCACCTGAAATTGAAGGGTTTAACGCTCTTTTGAAGGCCTTGGTTAGTTATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCTTTCAGGATTTTCATAAAAGGATTGGAATCAACGGCAGAGGCAGTTGATTTAAGAGCTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCGCTTGAGTTTCTAGAGGAAGAAGAAGAGGCAGCTACAGCCATATCTATGCACTGA

Protein sequence

MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLGELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEEEAATAISMH
Homology
[Close]
BLAST of HG10005539 vs. NCBI nr
Match: XP_038888189.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 414.5 bits (1064), Expect = 6.6e-112
Identity = 216/249 (86.75%), Postives = 225/249 (90.36%), Query Frame = 0 

Query: 1   MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+    SPTI SP + L  +GG+A CL LG  EGYR+VTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR K DLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLG 180
           EHWYKPQVSLYADII VLA NGLFE+VQ IHSYLKAETDLAPEI+GFNALLKALVS+NLG
Sbjct: 121 EHWYKPQVSLYADIIRVLASNGLFERVQIIHSYLKAETDLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMKE+GCEPDKASFRI IKGLES  EAVDLR VKQDAQKLYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKEIGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 240

Query: 241 EAATAISMH 250
           EAA AIS H
Sbjct: 241 EAAIAISTH 249

[Close]
BLAST of HG10005539 vs. NCBI nr
Match: XP_022969229.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022969230.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022969231.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022969232.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima])

HSP 1 Score: 414.5 bits (1064), Expect = 6.6e-112
Identity = 217/249 (87.15%), Postives = 226/249 (90.76%), Query Frame = 0 

Query: 1   MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+AT  S TI SPP+ L  +GGK   LRLG  EGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKRAK DLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLG 180
           E WYKPQVSLYADI++VLA NGLFEQVQ IHSYLKAETDLAPEIEGFN LLKALVSYNLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMKEVGCEPDKASFRI IKGLEST E+VDLR VK+DAQ+LYGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKASFRIVIKGLESTRESVDLRPVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAISMH 250
           EAAT IS H
Sbjct: 241 EAATGISTH 249

[Close]
BLAST of HG10005539 vs. NCBI nr
Match: XP_022952712.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata])

HSP 1 Score: 411.8 bits (1057), Expect = 4.3e-111
Identity = 215/249 (86.35%), Postives = 224/249 (89.96%), Query Frame = 0 

Query: 1   MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+AT  S TI SPP+ L  +GGK   LRLG  EGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKRAK DLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLG 180
           E WYKPQVSLYADI++VLA NGLFEQVQ IHSY KAETDLAPEIEGFN LLKALVSYNLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMKEVGCEPDK SFRI IKGLEST E+VDLR VK+DAQ+LYGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAISMH 250
           EAAT IS H
Sbjct: 241 EAATGISTH 249

[Close]
BLAST of HG10005539 vs. NCBI nr
Match: KAG6572189.1 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411.8 bits (1057), Expect = 4.3e-111
Identity = 214/249 (85.94%), Postives = 225/249 (90.36%), Query Frame = 0 

Query: 1   MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+AT  S TI SPP+ L  +GGK   LRLG  EGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKRAK DLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLG 180
           E WYKPQVSLYADI++VLA NGLFEQVQ IHSY KAETDLAPEIEGFN LLKALV+YNLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEPDK SFRI IKGLEST E+VDLR VK+DAQ+LYGESLEFLEEE+
Sbjct: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAISMH 250
           EAAT ISMH
Sbjct: 241 EAATGISMH 249

[Close]
BLAST of HG10005539 vs. NCBI nr
Match: KAG7011830.1 (Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 410.6 bits (1054), Expect = 9.6e-111
Identity = 214/249 (85.94%), Postives = 224/249 (89.96%), Query Frame = 0 

Query: 1   MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+AT  S TI SPP+ L  +GGK   LRLG  EGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKRAK DLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLG 180
           E WYKPQV LYADI++VLA NGLFEQVQ IHSY KAETDLAPEIEGFN LLKALV+YNLG
Sbjct: 121 EDWYKPQVLLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMKEVGCEPDK SFRI IKGLEST E+VDLR VK+DAQ+LYGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAISMH 250
           EAAT ISMH
Sbjct: 241 EAATGISMH 249

[Close]
BLAST of HG10005539 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.9e-19
Identity = 62/193 (32.12%), Postives = 106/193 (54.92%), Query Frame = 0 

Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K D ++LD+   + + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRNEHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGF 168
            +LA+K+FE ++ + WY+P V +Y D+I  LA +   ++   +   +K E +L P+ + +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NALLKALVSYNLGELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQK 228
             +++  +       AM  Y  M +    P++  FR+ +KGL      +    VK+D ++
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 229 LYGESLEFLEEEE 241
           L+ E   +   EE
Sbjct: 243 LFPEKHAYDPPEE 252

[Close]
BLAST of HG10005539 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-16
Identity = 65/172 (37.79%), Postives = 93/172 (54.07%), Query Frame = 0 

Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKRA      L       +RRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVFEDVRNEHWYKP-QVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAP 163
           RQ+ C+LA+ V   +R E  Y P  + LYADI+  L  N  F+++  +   +    D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 164 EIEGFNALLKALVSYNLGELAMESYYLMKEVG-----CEPDKASFRIFIKGL 210
           + +    L++A+V     E  +  Y LM+E G      E D+    +  KGL
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGL 201

[Close]
BLAST of HG10005539 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-16
Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 0 

Query: 58  LSIEAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +    +LDR   S + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRNEHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSY 177
           VR E WY+P +  Y D++ +LA N   ++ + +   LK E  L  +   F  L++  +  
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 NLGELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLY 230
            L   AM  Y  M+E    P    FR+ +KGL    E  +   VK D  +L+
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELRE--KVKDDFLELF 169

[Close]
BLAST of HG10005539 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 37/112 (33.04%), Postives = 62/112 (55.36%), Query Frame = 0 

Query: 110 LALKVFEDVRNEHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNA 169
           ++ K++ ++R+ H  KP +  Y  ++   A  GL E+ + I   L+ E  L P++  +NA
Sbjct: 282 MSWKLYCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNA 341

Query: 170 LLKALVSYNLGELAMESYYLMKEVGCEPDKASFRIFI-----KGLESTAEAV 217
           L+++         A E + LM+ +GCEPD+AS+ I +      GL S AEAV
Sbjct: 342 LMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391

[Close]
BLAST of HG10005539 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-06
Identity = 31/113 (27.43%), Postives = 55/113 (48.67%), Query Frame = 0 

Query: 95  MMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLACNGLFEQVQTIHSYL 154
           ++  L E +++N    ALK+F  +R +HWY+P+   Y  +  VL      +Q   +   +
Sbjct: 61  VLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVM 120

Query: 155 KAETDLAPEIEGFNALLKALVSYNLGELAMESYYLMKEVG-CEPDKASFRIFI 207
            +E  L P I+ + +L+       L + A  +   MK V  C+PD  +F + I
Sbjct: 121 LSE-GLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172

[Close]
BLAST of HG10005539 vs. ExPASy TrEMBL
Match: A0A6J1HX85 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468293 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 3.2e-112
Identity = 217/249 (87.15%), Postives = 226/249 (90.76%), Query Frame = 0 

Query: 1   MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+AT  S TI SPP+ L  +GGK   LRLG  EGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKRAK DLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLG 180
           E WYKPQVSLYADI++VLA NGLFEQVQ IHSYLKAETDLAPEIEGFN LLKALVSYNLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMKEVGCEPDKASFRI IKGLEST E+VDLR VK+DAQ+LYGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKASFRIVIKGLESTRESVDLRPVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAISMH 250
           EAAT IS H
Sbjct: 241 EAATGISTH 249

[Close]
BLAST of HG10005539 vs. ExPASy TrEMBL
Match: A0A6J1GL50 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455325 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.1e-111
Identity = 215/249 (86.35%), Postives = 224/249 (89.96%), Query Frame = 0 

Query: 1   MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+AT  S TI SPP+ L  +GGK   LRLG  EGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKRAK DLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLG 180
           E WYKPQVSLYADI++VLA NGLFEQVQ IHSY KAETDLAPEIEGFN LLKALVSYNLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMKEVGCEPDK SFRI IKGLEST E+VDLR VK+DAQ+LYGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAISMH 250
           EAAT IS H
Sbjct: 241 EAATGISTH 249

[Close]
BLAST of HG10005539 vs. ExPASy TrEMBL
Match: A0A5A7UZI6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00170 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 6.1e-111
Identity = 213/249 (85.54%), Postives = 224/249 (89.96%), Query Frame = 0 

Query: 1   MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ TL SPTI SPP  LP +  K CCL+LG  EGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR K DLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLG 180
           EHWYKPQVSLYADIITVLA NGLFE+VQ I SY+KAETDLAPEI+GFNALLKALV +NLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEP+KASFRI IKGLE   EAVDLR VKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EAATAISMH 250
           E ATAIS+H
Sbjct: 241 EGATAISIH 249

[Close]
BLAST of HG10005539 vs. ExPASy TrEMBL
Match: A0A1S3BRZ8 (pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=3656 GN=LOC103492562 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 6.1e-111
Identity = 213/249 (85.54%), Postives = 224/249 (89.96%), Query Frame = 0 

Query: 1   MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ TL SPTI SPP  LP +  K CCL+LG  EGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR K DLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLG 180
           EHWYKPQVSLYADIITVLA NGLFE+VQ I SY+KAETDLAPEI+GFNALLKALV +NLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEP+KASFRI IKGLE   EAVDLR VKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EAATAISMH 250
           E ATAIS+H
Sbjct: 241 EGATAISIH 249

[Close]
BLAST of HG10005539 vs. ExPASy TrEMBL
Match: A0A5D3CCT4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00060 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.8e-110
Identity = 212/249 (85.14%), Postives = 223/249 (89.56%), Query Frame = 0 

Query: 1   MSFIATLLSPTIFSPPFNLPRTGGKACCLRLGCTEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ TL SPTI SPP  LP +  K CCL+LG  EGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR K DLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLG 180
           EHWYKPQVSLYADIITVLA NGLFE+VQ I SY+KAETDLAPEI+GFNALLK LV +NLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKVLVGHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEP+KASFRI IKGLE   EAVDLR VKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EAATAISMH 250
           E ATAIS+H
Sbjct: 241 EGATAISIH 249

[Close]
BLAST of HG10005539 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 226.1 bits (575), Expect = 3.1e-59
Identity = 123/224 (54.91%), Postives = 157/224 (70.09%), Query Frame = 0 

Query: 40  VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRA---------------KNDLQQLDRVYD 99
           + MR  S+NRKPLQ+GR LSIEAIQAVQ+LKRA                +    LDRV  
Sbjct: 487 IKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVII 546

Query: 100 SKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLACNGLF 159
           SK RRLLKFDM+AVLRELLRQNECSLALKVFE++R E+WYKPQV +Y D+ITV+A N L 
Sbjct: 547 SKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLM 606

Query: 160 EQVQTIHSYLKAETDLAPEIEGFNALLKALVSYNLGELAMESYYLMKEVGCEPDKASFRI 219
           E+V  ++S +K+E  L  EIE FN LL  L+++ L +L M+ Y  M+ +G EPD+ASFR+
Sbjct: 607 EEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRV 666

Query: 220 FIKGLESTAEAVDLRAVKQDAQKLYGESLEFLEEEEEAATAISM 249
            + GLES  E      V+QDA + YGESLEF+EE+EE ++  S+
Sbjct: 667 LVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEEISSGTSV 710

[Close]
BLAST of HG10005539 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 4.9e-20
Identity = 62/193 (32.12%), Postives = 106/193 (54.92%), Query Frame = 0 

Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K D ++LD+   + + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRNEHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGF 168
            +LA+K+FE ++ + WY+P V +Y D+I  LA +   ++   +   +K E +L P+ + +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NALLKALVSYNLGELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQK 228
             +++  +       AM  Y  M +    P++  FR+ +KGL      +    VK+D ++
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 229 LYGESLEFLEEEE 241
           L+ E   +   EE
Sbjct: 243 LFPEKHAYDPPEE 252

[Close]
BLAST of HG10005539 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-17
Identity = 65/172 (37.79%), Postives = 93/172 (54.07%), Query Frame = 0 

Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKRA      L       +RRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVFEDVRNEHWYKP-QVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAP 163
           RQ+ C+LA+ V   +R E  Y P  + LYADI+  L  N  F+++  +   +    D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 164 EIEGFNALLKALVSYNLGELAMESYYLMKEVG-----CEPDKASFRIFIKGL 210
           + +    L++A+V     E  +  Y LM+E G      E D+    +  KGL
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGL 201

[Close]
BLAST of HG10005539 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-17
Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 0 

Query: 58  LSIEAIQAVQSLKRAKNDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +    +LDR   S + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRNEHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNALLKALVSY 177
           VR E WY+P +  Y D++ +LA N   ++ + +   LK E  L  +   F  L++  +  
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 NLGELAMESYYLMKEVGCEPDKASFRIFIKGLESTAEAVDLRAVKQDAQKLY 230
            L   AM  Y  M+E    P    FR+ +KGL    E  +   VK D  +L+
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELRE--KVKDDFLELF 169

[Close]
BLAST of HG10005539 vs. TAIR 10
Match: AT2G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-09
Identity = 37/112 (33.04%), Postives = 62/112 (55.36%), Query Frame = 0 

Query: 110 LALKVFEDVRNEHWYKPQVSLYADIITVLACNGLFEQVQTIHSYLKAETDLAPEIEGFNA 169
           ++ K++ ++R+ H  KP +  Y  ++   A  GL E+ + I   L+ E  L P++  +NA
Sbjct: 282 MSWKLYCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNA 341

Query: 170 LLKALVSYNLGELAMESYYLMKEVGCEPDKASFRIFI-----KGLESTAEAV 217
           L+++         A E + LM+ +GCEPD+AS+ I +      GL S AEAV
Sbjct: 342 LMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391

The following BLAST results are available for this feature:
BLAST of HG10005539 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888189.16.6e-11286.75protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida][more]
XP_022969229.16.6e-11287.15protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_02296923... [more]
XP_022952712.14.3e-11186.35protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata][more]
KAG6572189.14.3e-11185.94Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperm... [more]
KAG7011830.19.6e-11185.94Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyr... [more]
BLAST of HG10005539 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STF96.9e-1932.12Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Q9LVW61.4e-1637.79Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T... [more]
Q1PFH71.9e-1633.72Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX... [more]
O821781.4e-0833.04Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX... [more]
Q9SCP43.9e-0627.43Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX... [more]
BLAST of HG10005539 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HX853.2e-11287.15protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1GL502.1e-11186.35protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G... [more]
A0A5A7UZI66.1e-11185.54Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BRZ86.1e-11185.54pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=36... [more]
A0A5D3CCT41.8e-11085.14Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of HG10005539 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G09320.13.1e-5954.91Vacuolar sorting protein 9 (VPS9) domain [more]
AT3G46870.14.9e-2032.12Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G27750.11.0e-1737.79FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G62350.11.3e-1733.72Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G35130.11.0e-0933.04Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 62..89
NoneNo IPR availablePANTHERPTHR47594:SF4THYLAKOID ASSEMBLY8coord: 25..243
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 158..206
e-value: 7.9E-4
score: 19.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 167..198
e-value: 0.0027
score: 15.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 57..228
e-value: 5.9E-42
score: 145.4
IPR044190Protein THYLAKOID ASSEMBLY 8-likePANTHERPTHR47594PPR CONTAINING PLANT-LIKE PROTEINcoord: 25..243

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005539.1HG10005539.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0000373 Group II intron splicing
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding