HG10004064 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004064
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Prolamin_like domain-containing protein
Location	Chr08: 13288448 .. 13288846 (+)
RNA-Seq Expression	HG10004064
Synteny	HG10004064

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAGGAAACTAACATTATGGGAGCAATGGCGATTCTCTTATTGGCAATAAACTTAGCAACCTTAGTTCAACCTTCCATAGCAGACGATGACTACAATTCACCAATATGGGATGGGTGGGTGGACGAGGATAGAGGAGCAAATCTACGACCATGTTTAGATATGATGAAGAGTGCAAAATGTCAAGTAGAACTTTATAATTACTACTTCAATATAAGCAAGGAGGAATTGGATCTATATTGTTGCGTCTTCGTCAAAGTCATGGGGAAGGAATGTGCTCAAGCTTTTGCTGGTTGGTACAAGTTTCCTGGTTTGGAAGTCTACGAGCCTAATCCTATGAAGGTTTACAACAATTGTGTTGGAAGACTTGATGATCTCCCACCCGCACCATTTTAA

mRNA sequence

ATGGTAAAGGAAACTAACATTATGGGAGCAATGGCGATTCTCTTATTGGCAATAAACTTAGCAACCTTAGTTCAACCTTCCATAGCAGACGATGACTACAATTCACCAATATGGGATGGGTGGGTGGACGAGGATAGAGGAGCAAATCTACGACCATGTTTAGATATGATGAAGAGTGCAAAATGTCAAGTAGAACTTTATAATTACTACTTCAATATAAGCAAGGAGGAATTGGATCTATATTGTTGCGTCTTCGTCAAAGTCATGGGGAAGGAATGTGCTCAAGCTTTTGCTGGTTGGTACAAGTTTCCTGGTTTGGAAGTCTACGAGCCTAATCCTATGAAGGTTTACAACAATTGTGTTGGAAGACTTGATGATCTCCCACCCGCACCATTTTAA

Coding sequence (CDS)

ATGGTAAAGGAAACTAACATTATGGGAGCAATGGCGATTCTCTTATTGGCAATAAACTTAGCAACCTTAGTTCAACCTTCCATAGCAGACGATGACTACAATTCACCAATATGGGATGGGTGGGTGGACGAGGATAGAGGAGCAAATCTACGACCATGTTTAGATATGATGAAGAGTGCAAAATGTCAAGTAGAACTTTATAATTACTACTTCAATATAAGCAAGGAGGAATTGGATCTATATTGTTGCGTCTTCGTCAAAGTCATGGGGAAGGAATGTGCTCAAGCTTTTGCTGGTTGGTACAAGTTTCCTGGTTTGGAAGTCTACGAGCCTAATCCTATGAAGGTTTACAACAATTGTGTTGGAAGACTTGATGATCTCCCACCCGCACCATTTTAA

Protein sequence

MVKETNIMGAMAILLLAINLATLVQPSIADDDYNSPIWDGWVDEDRGANLRPCLDMMKSAKCQVELYNYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMKVYNNCVGRLDDLPPAPF

Homology

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BLAST of HG10004064 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232.3 bits (591), Expect = 2.5e-57
Identity = 107/125 (85.60%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 8   MGAMAILLLAINLATLVQPSIADDDYNSPIWDGWVDEDRGANLRPCLDMMKSAKCQVELY 67
           MGAM ILLLAINLA L QPS ADDDYNSPIWD WVDEDRG NLRPCLDMMKSAKCQVELY
Sbjct: 1   MGAMVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELY 60

Query: 68  NYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMKVYNNCVGRLDDL 127
           NYYFNISK+ELDL CCVFVKVMGK CA+AFAGW++FP  EV+E NPMKVY NCVGRLD L
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDAL 120

Query: 128 PPAPF 133
           PPAPF
Sbjct: 121 PPAPF 125

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BLAST of HG10004064 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 227.3 bits (578), Expect = 8.0e-56
Identity = 106/135 (78.52%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MVKETNIMGA-MAILLLAINLATLVQPSIA--DDDYNSPIWDGWVDEDRGANLRPCLDMM 60
           M   TN +G  + ILLLA+NLA LV PS+A  DDDYNSPIW+GWVDEDR +NLRPCLDMM
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KSAKCQVELYNYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMKVY 120
           KSAKCQV+LYNYYFNISK+ELDL CCVFVK+MGK CA AFAGWY+FPGLEVYEPNPM VY
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 NNCVGRLDDLPPAPF 133
           NNCVGRL  LPP PF
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of HG10004064 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 9.8e-54
Identity = 100/125 (80.00%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 8   MGAMAILLLAINLATLVQPSIADDDYNSPIWDGWVDEDRGANLRPCLDMMKSAKCQVELY 67
           M A+ ILL AINL+ LVQ S  D+DYNSPIWDGWVDEDRG  LRPCLD M+SAKCQVELY
Sbjct: 1   MRAIVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELY 60

Query: 68  NYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMKVYNNCVGRLDDL 127
           NYYFNISK+ELDL CCVFVKVMGK+CAQAF  WY+FPGLE+YEPNPMKVYNNC+ RLD  
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAP 120

Query: 128 PPAPF 133
           PPAPF
Sbjct: 121 PPAPF 125

[Close]

BLAST of HG10004064 vs. NCBI nr
Match: KAG6575249.1 (hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.0 bits (476), Expect = 5.4e-44
Identity = 86/130 (66.15%), Postives = 102/130 (78.46%), Query Frame = 0


Query: 1   MVKETNIMGAMAILLLAINLATLVQPSIADDDYNSPIWDGWVDEDRGANLRPCLDMMKSA 60
           M KET+ +GAM +LLLA+NL   V+ + AD DYNSPIWD W+DEDR   LRPCL++MKSA
Sbjct: 1   MAKETSTLGAMVVLLLAVNLQGFVRVTSADVDYNSPIWDRWLDEDRAYYLRPCLNLMKSA 60

Query: 61  KCQVELYNYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMKVYNNC 120
           KCQV+LYN YFN+SKEELDL CCVFVKVMGK CA  FAGW+ +P  EVY+PNPM +Y  C
Sbjct: 61  KCQVQLYNNYFNLSKEELDLNCCVFVKVMGKNCALDFAGWFDYPIFEVYKPNPMNLYKRC 120

Query: 121 VGRL-DDLPP 130
           V RL   +PP
Sbjct: 121 VARLSSSIPP 130

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BLAST of HG10004064 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-43
Identity = 86/112 (76.79%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 4   ETNIMGAMAILLLAINLATLVQPSIADDDYNSPIWDGWVDEDRGANLRPCLDMMKSAKCQ 63
           +TN M AM ILL  INLA LVQP   D+DYNS IW+ W+DEDR   LRPCLD M+SAKCQ
Sbjct: 30  KTNAMRAMLILLSTINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKCQ 89

Query: 64  VELYNYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMK 116
           VELYNYYFNISKEELDL CCVFVKVMGK+CAQAF  WY+FPGLE+YEPNPMK
Sbjct: 90  VELYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMK 141

[Close]

BLAST of HG10004064 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.9e-56
Identity = 106/135 (78.52%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MVKETNIMGA-MAILLLAINLATLVQPSIA--DDDYNSPIWDGWVDEDRGANLRPCLDMM 60
           M   TN +G  + ILLLA+NLA LV PS+A  DDDYNSPIW+GWVDEDR +NLRPCLDMM
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KSAKCQVELYNYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMKVY 120
           KSAKCQV+LYNYYFNISK+ELDL CCVFVK+MGK CA AFAGWY+FPGLEVYEPNPM VY
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 NNCVGRLDDLPPAPF 133
           NNCVGRL  LPP PF
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of HG10004064 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.7e-54
Identity = 100/125 (80.00%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 8   MGAMAILLLAINLATLVQPSIADDDYNSPIWDGWVDEDRGANLRPCLDMMKSAKCQVELY 67
           M A+ ILL AINL+ LVQ S  D+DYNSPIWDGWVDEDRG  LRPCLD M+SAKCQVELY
Sbjct: 1   MRAIVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELY 60

Query: 68  NYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMKVYNNCVGRLDDL 127
           NYYFNISK+ELDL CCVFVKVMGK+CAQAF  WY+FPGLE+YEPNPMKVYNNC+ RLD  
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAP 120

Query: 128 PPAPF 133
           PPAPF
Sbjct: 121 PPAPF 125

[Close]

BLAST of HG10004064 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 97/131 (74.05%), Postives = 106/131 (80.92%), Query Frame = 0


Query: 1   MVKETNIMGAMAILLLAINLATLVQPSIADDDYNSPIWDGWVDEDRGANLRPCLDMMKSA 60
           M  +TN M AM ILL AINLA LVQ S  D+DYNS IW+ W+DEDR   LRPCLD M+SA
Sbjct: 1   MANKTNAMRAMVILLSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 60

Query: 61  KCQVELYNYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMKVYNNC 120
           KCQVELYNYYFNISK+ELDL CCVFVKVMGK+CAQAF  WY+FPGLE+YEPNPMKVYNNC
Sbjct: 61  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNC 120

Query: 121 VGRLDDLPPAP 132
             RL   PP P
Sbjct: 121 ATRLSAPPPTP 131

[Close]

BLAST of HG10004064 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.4e-36
Identity = 76/132 (57.58%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 1   MVKETNIMGAMAIL-LLAINLATLVQPSIADDDYNSPIWDGWVDEDRGANLRPCLDMMKS 60
           M   T ++  + +L LL ++   LVQPS  DD+  S IW  W+DEDR   L PCL MM+S
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  AKCQVELYNYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMKVYNN 120
            KCQVELYNYYFNISK+ELDL CCV+V  MGK+CA AF  W+ FP LE  +PNPMKVYNN
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CVGRLDDLPPAP 132
           C  RL    P P
Sbjct: 121 CFKRLTFPAPTP 132

[Close]

BLAST of HG10004064 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.6e-31
Identity = 70/135 (51.85%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 1   MVKETNIMGAMAIL----LLAINLATLVQPSIADDDYNSPIWDGWVDEDRGANLRPCLDM 60
           M K +N  GA+ ++    LL ++   LV PSI DD+  S IW GW+D+DR   L  CL +
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSAKCQVELYNYYFNISKEELDLYCCVFVKVMGKECAQAFAGWYKFPGLEVYEPNPMKV 120
           MKS KCQVELYNYYFN SK+E+DL CCV+V  +G+ECA +F  W+   G +  +PNPMK+
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNNCVGRLDDLPPAP 132
           YNNC  RL    PAP
Sbjct: 121 YNNCFKRL--TVPAP 133

The following BLAST results are available for this feature:

BLAST of HG10004064 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578867.1	2.5e-57	85.60	hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0046841.1	8.0e-56	78.52	hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044...	[more]
KAA0046835.1	9.8e-54	80.00	hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004...	[more]
KAG6575249.1	5.4e-44	66.15	hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8646662.1	1.6e-43	76.79	hypothetical protein Csa_004797, partial [Cucumis sativus]	[more]

BLAST of HG10004064 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004064 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZR1	3.9e-56	78.52	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3C280	4.7e-54	80.00	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KEB8	1.1e-50	74.05	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543...	[more]
A0A0A0KQ41	4.4e-36	57.58	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A0A0L535	5.6e-31	51.85	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]

BLAST of HG10004064 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 53..120 e-value: 7.7E-7 score: 29.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004064.1	HG10004064.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity