HG10004005 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10004005
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 12654620 .. 12654877 (+)
RNA-Seq ExpressionHG10004005
SyntenyHG10004005
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGTGCAAAATTGCATCCCTTTATTTTGTTCCTTCTCATTGCATTCATCTTCTTAAATCTGCCATCAAAATTTACAGCAGCTCGCCCCATAGTTCCTTATTTTCATTTGATAGTTACATCGTCGTCACCGCCCAAGATTAAGCAATACACACTGAAGTCACAGCCGTTGCGGCCGCCAAGTCCAAGTTCTGGATCTCCCGGTCACCAATGGCCAGATAATTCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA

mRNA sequence

ATGGGTTGTGCAAAATTGCATCCCTTTATTTTGTTCCTTCTCATTGCATTCATCTTCTTAAATCTGCCATCAAAATTTACAGCAGCTCGCCCCATAGTTCCTTATTTTCATTTGATAGTTACATCGTCGTCACCGCCCAAGATTAAGCAATACACACTGAAGTCACAGCCGTTGCGGCCGCCAAGTCCAAGTTCTGGATCTCCCGGTCACCAATGGCCAGATAATTCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGGGTTGTGCAAAATTGCATCCCTTTATTTTGTTCCTTCTCATTGCATTCATCTTCTTAAATCTGCCATCAAAATTTACAGCAGCTCGCCCCATAGTTCCTTATTTTCATTTGATAGTTACATCGTCGTCACCGCCCAAGATTAAGCAATACACACTGAAGTCACAGCCGTTGCGGCCGCCAAGTCCAAGTTCTGGATCTCCCGGTCACCAATGGCCAGATAATTCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA

Protein sequence

MGCAKLHPFILFLLIAFIFLNLPSKFTAARPIVPYFHLIVTSSSPPKIKQYTLKSQPLRPPSPSSGSPGHQWPDNSVRKSPPPPF
Homology
BLAST of HG10004005 vs. NCBI nr
Match: KAG6607626.1 (hypothetical protein SDJN03_00968, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 8.9e-08
Identity = 46/97 (47.42%), Postives = 54/97 (55.67%), Query Frame = 0

Query: 1  MGCAKLHPFILFLLIAFIFLNLPSKFTA-------ARPIVPYF-----HLIVTSSSPPKI 60
          MG A   PFI  LLIA +FL+L SKFTA       ARPI P       +L    +SP   
Sbjct: 1  MGSATSSPFISSLLIALVFLDLASKFTAQSFVYPPARPIAPMLKPIAPYLRSLFASPSNN 60

Query: 61 KQYTLKSQPLRPPSPSSGSPGHQWPDNSVRKSPPPPF 86
          KQY+++S       P S  P HQWP+ SV KSPPPPF
Sbjct: 61 KQYSVRSGRSLSVPPQSPGPDHQWPNESVSKSPPPPF 97

BLAST of HG10004005 vs. NCBI nr
Match: KGN47469.1 (hypothetical protein Csa_018822 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 7.0e-05
Identity = 47/91 (51.65%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1  MGCAKLHPFILFLLIAFIFLNLPSKFTAARPIVPYFHLIVTSSSPP-KIKQYTLK--SQP 60
          MG AKL  FI  LLIA IFLNL SKF A        +L  +   PP   KQ+T K     
Sbjct: 1  MGSAKLPSFIFSLLIALIFLNLLSKFAAQ-------NLHSSLPRPPANNKQFTEKPWESL 60

Query: 61 LRPPS-PSSGSPG--HQWPDNSVRKSPPPPF 86
          LRPPS P S  PG  HQWP+  +R SPPPPF
Sbjct: 61 LRPPSRPPSRPPGSDHQWPNQPIRISPPPPF 84

BLAST of HG10004005 vs. NCBI nr
Match: KAA0058930.1 (hypothetical protein E6C27_scaffold98G001050 [Cucumis melo var. makuwa] >TYK23702.1 hypothetical protein E5676_scaffold1607G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 44/87 (50.57%), Postives = 46/87 (52.87%), Query Frame = 0

Query: 1  MGCAKLHPFILFLLIAFIFLNLPSKFTAARPIVPYFHLIVTSSSPPKIKQYTLK--SQPL 60
          MG AKL  FI  LLIA I LNL SKF A     P          P   KQ+T K     L
Sbjct: 1  MGSAKLPSFIFSLLIALIILNLLSKFAAQNLHSP------PPRPPANNKQFTGKPWESLL 60

Query: 61 RPPSPSSGSPGHQWPDNSVRKSPPPPF 86
          RPPS   GS  HQWP+  VR SPPPPF
Sbjct: 61 RPPSRPPGS-DHQWPNQPVRTSPPPPF 80

BLAST of HG10004005 vs. ExPASy TrEMBL
Match: A0A0A0KF84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337520 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-05
Identity = 47/91 (51.65%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1  MGCAKLHPFILFLLIAFIFLNLPSKFTAARPIVPYFHLIVTSSSPP-KIKQYTLK--SQP 60
          MG AKL  FI  LLIA IFLNL SKF A        +L  +   PP   KQ+T K     
Sbjct: 1  MGSAKLPSFIFSLLIALIFLNLLSKFAAQ-------NLHSSLPRPPANNKQFTEKPWESL 60

Query: 61 LRPPS-PSSGSPG--HQWPDNSVRKSPPPPF 86
          LRPPS P S  PG  HQWP+  +R SPPPPF
Sbjct: 61 LRPPSRPPSRPPGSDHQWPNQPIRISPPPPF 84

BLAST of HG10004005 vs. ExPASy TrEMBL
Match: A0A5D3DJG3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00070 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.8e-05
Identity = 44/87 (50.57%), Postives = 46/87 (52.87%), Query Frame = 0

Query: 1  MGCAKLHPFILFLLIAFIFLNLPSKFTAARPIVPYFHLIVTSSSPPKIKQYTLK--SQPL 60
          MG AKL  FI  LLIA I LNL SKF A     P          P   KQ+T K     L
Sbjct: 1  MGSAKLPSFIFSLLIALIILNLLSKFAAQNLHSP------PPRPPANNKQFTGKPWESLL 60

Query: 61 RPPSPSSGSPGHQWPDNSVRKSPPPPF 86
          RPPS   GS  HQWP+  VR SPPPPF
Sbjct: 61 RPPSRPPGS-DHQWPNQPVRTSPPPPF 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607626.18.9e-0847.42hypothetical protein SDJN03_00968, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN47469.17.0e-0551.65hypothetical protein Csa_018822 [Cucumis sativus][more]
KAA0058930.11.2e-0450.57hypothetical protein E6C27_scaffold98G001050 [Cucumis melo var. makuwa] >TYK2370... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KF843.4e-0551.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337520 PE=4 SV=1[more]
A0A5D3DJG35.8e-0550.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10004005.1HG10004005.1mRNA