HG10003398 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003398
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein FAR1-RELATED SEQUENCE 3-like
Location	Chr08: 686505 .. 686777 (+)
RNA-Seq Expression	HG10003398
Synteny	HG10003398

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCAAATGGAATCCAGTGCACCAGGTATACGTGTTGAGTTAGAATCAATTGGATTTTCTCAATGGTCACGTGCTTACTCACCTCGCAAGAGATATATGGTGATGACAACAAATATATCTGAGAGGCTGAATTCTACCATGCTTAAAGCTAGGGTTTTACCTATTGCATCTATGCTTGAGGTTTTGATGATGATGTTACAAAAATGGTTTTACGATAGAAGAAATGAAGCAGAGTATCAGGCTATCGAGTTCAGCAAATCTATTGAGTAA

mRNA sequence

ATGCGTCAAATGGAATCCAGTGCACCAGGTATACGTGTTGAGTTAGAATCAATTGGATTTTCTCAATGGTCACGTGCTTACTCACCTCGCAAGAGATATATGGTGATGACAACAAATATATCTGAGAGGCTGAATTCTACCATGCTTAAAGCTAGGGTTTTACCTATTGCATCTATGCTTGAGGTTTTGATGATGATGTTACAAAAATGGTTTTACGATAGAAGAAATGAAGCAGAGTATCAGGCTATCGAGTTCAGCAAATCTATTGAGTAA

Coding sequence (CDS)

ATGCGTCAAATGGAATCCAGTGCACCAGGTATACGTGTTGAGTTAGAATCAATTGGATTTTCTCAATGGTCACGTGCTTACTCACCTCGCAAGAGATATATGGTGATGACAACAAATATATCTGAGAGGCTGAATTCTACCATGCTTAAAGCTAGGGTTTTACCTATTGCATCTATGCTTGAGGTTTTGATGATGATGTTACAAAAATGGTTTTACGATAGAAGAAATGAAGCAGAGTATCAGGCTATCGAGTTCAGCAAATCTATTGAGTAA

Protein sequence

MRQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASMLEVLMMMLQKWFYDRRNEAEYQAIEFSKSIE

Homology

[Close]

BLAST of HG10003398 vs. NCBI nr
Match: KAA0039149.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 3.1e-27
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1   MRQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASML 60
           MR +ESSAPGIR ELE IGF++WSRAYSPR+RY VMTTNISE LNS MLKA+ LPI SML
Sbjct: 304 MRLLESSAPGIREELEPIGFAKWSRAYSPRRRYNVMTTNISESLNSAMLKAKELPICSML 363

Query: 61  EVLMMMLQKWFYDRRNEAEYQAIEFSKSIE 91
           EVL MMLQ WF++RRNE +YQ   F+K+IE
Sbjct: 364 EVLRMMLQIWFFERRNEVDYQVTNFTKTIE 393

[Close]

BLAST of HG10003398 vs. NCBI nr
Match: TYK26962.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 3.1e-27
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1   MRQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASML 60
           MR +ESSAPGIR ELE IGF++WSRAYSPR+RY VMTTNISE LNS MLKA+ LPI SML
Sbjct: 145 MRLLESSAPGIREELEPIGFAKWSRAYSPRRRYNVMTTNISESLNSAMLKAKELPICSML 204

Query: 61  EVLMMMLQKWFYDRRNEAEYQAIEFSKSIE 91
           EVL MMLQ WF++RRNE +YQ   F+K+IE
Sbjct: 205 EVLRMMLQIWFFERRNEVDYQVTNFTKTIE 234

[Close]

BLAST of HG10003398 vs. NCBI nr
Match: XP_016903392.1 (PREDICTED: uncharacterized protein LOC107992162, partial [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 6.9e-27
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MRQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASML 60
          MR +ESSAPGIR ELESIGF++WSRAYSPR +Y VMTTNIS+ LNS MLKAR LPI SML
Sbjct: 1  MRLLESSAPGIREELESIGFAKWSRAYSPRMQYNVMTTNISKSLNSAMLKARELPICSML 60

Query: 61 EVLMMMLQKWFYDRRNEAEYQAIEFSKSIE 91
          EVL MMLQ+WF+ RRNE +YQ  +F+++IE
Sbjct: 61 EVLRMMLQRWFFGRRNEVDYQVTDFTETIE 90

[Close]

BLAST of HG10003398 vs. NCBI nr
Match: KAA0044862.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1   MRQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASML 60
           MR +ESSAPGIR +LESIGF++WSRAYSPR RY VMTTNISE LN  MLKAR LPI SML
Sbjct: 192 MRLLESSAPGIREKLESIGFAKWSRAYSPRMRYNVMTTNISESLNFAMLKARELPICSML 251

Query: 61  EVLMMMLQKWFYDRRNEAEYQAIEFSKSIE 91
           +VL MMLQ+WF++RRNEA+ Q  +F+K+IE
Sbjct: 252 KVLRMMLQRWFFERRNEADCQVTDFTKTIE 281

[Close]

BLAST of HG10003398 vs. NCBI nr
Match: XP_008463110.1 (PREDICTED: uncharacterized protein LOC103501336 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 4.5e-26
Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 2   RQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASMLE 61
           R  +SSAPGIR ELE IGF++WSRAYSPR+RY VMTTNISE LNS MLKA+ LPI SMLE
Sbjct: 274 RHKKSSAPGIREELEPIGFAKWSRAYSPRRRYNVMTTNISESLNSAMLKAKELPICSMLE 333

Query: 62  VLMMMLQKWFYDRRNEAEYQAIEFSKSIE 91
           VL MMLQ WF++RRNE +YQ   F+K+IE
Sbjct: 334 VLRMMLQIWFFERRNEVDYQVTNFTKTIE 362

[Close]

BLAST of HG10003398 vs. ExPASy TrEMBL
Match: A0A5D3DTY1 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00240 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1   MRQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASML 60
           MR +ESSAPGIR ELE IGF++WSRAYSPR+RY VMTTNISE LNS MLKA+ LPI SML
Sbjct: 145 MRLLESSAPGIREELEPIGFAKWSRAYSPRRRYNVMTTNISESLNSAMLKAKELPICSML 204

Query: 61  EVLMMMLQKWFYDRRNEAEYQAIEFSKSIE 91
           EVL MMLQ WF++RRNE +YQ   F+K+IE
Sbjct: 205 EVLRMMLQIWFFERRNEVDYQVTNFTKTIE 234

[Close]

BLAST of HG10003398 vs. ExPASy TrEMBL
Match: A0A5A7TCZ3 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00480 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1   MRQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASML 60
           MR +ESSAPGIR ELE IGF++WSRAYSPR+RY VMTTNISE LNS MLKA+ LPI SML
Sbjct: 304 MRLLESSAPGIREELEPIGFAKWSRAYSPRRRYNVMTTNISESLNSAMLKAKELPICSML 363

Query: 61  EVLMMMLQKWFYDRRNEAEYQAIEFSKSIE 91
           EVL MMLQ WF++RRNE +YQ   F+K+IE
Sbjct: 364 EVLRMMLQIWFFERRNEVDYQVTNFTKTIE 393

[Close]

BLAST of HG10003398 vs. ExPASy TrEMBL
Match: A0A1S4E594 (uncharacterized protein LOC107992162 OS=Cucumis melo OX=3656 GN=LOC107992162 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.4e-27
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MRQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASML 60
          MR +ESSAPGIR ELESIGF++WSRAYSPR +Y VMTTNIS+ LNS MLKAR LPI SML
Sbjct: 1  MRLLESSAPGIREELESIGFAKWSRAYSPRMQYNVMTTNISKSLNSAMLKARELPICSML 60

Query: 61 EVLMMMLQKWFYDRRNEAEYQAIEFSKSIE 91
          EVL MMLQ+WF+ RRNE +YQ  +F+++IE
Sbjct: 61 EVLRMMLQRWFFGRRNEVDYQVTDFTETIE 90

[Close]

BLAST of HG10003398 vs. ExPASy TrEMBL
Match: A0A5A7TNE6 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001540 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.8e-27
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1   MRQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASML 60
           MR +ESSAPGIR +LESIGF++WSRAYSPR RY VMTTNISE LN  MLKAR LPI SML
Sbjct: 192 MRLLESSAPGIREKLESIGFAKWSRAYSPRMRYNVMTTNISESLNFAMLKARELPICSML 251

Query: 61  EVLMMMLQKWFYDRRNEAEYQAIEFSKSIE 91
           +VL MMLQ+WF++RRNEA+ Q  +F+K+IE
Sbjct: 252 KVLRMMLQRWFFERRNEADCQVTDFTKTIE 281

[Close]

BLAST of HG10003398 vs. ExPASy TrEMBL
Match: A0A1S3CIV7 (uncharacterized protein LOC103501336 OS=Cucumis melo OX=3656 GN=LOC103501336 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26
Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 2   RQMESSAPGIRVELESIGFSQWSRAYSPRKRYMVMTTNISERLNSTMLKARVLPIASMLE 61
           R  +SSAPGIR ELE IGF++WSRAYSPR+RY VMTTNISE LNS MLKA+ LPI SMLE
Sbjct: 274 RHKKSSAPGIREELEPIGFAKWSRAYSPRRRYNVMTTNISESLNSAMLKAKELPICSMLE 333

Query: 62  VLMMMLQKWFYDRRNEAEYQAIEFSKSIE 91
           VL MMLQ WF++RRNE +YQ   F+K+IE
Sbjct: 334 VLRMMLQIWFFERRNEVDYQVTNFTKTIE 362

The following BLAST results are available for this feature:

BLAST of HG10003398 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039149.1	3.1e-27	73.33	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]	[more]
TYK26962.1	3.1e-27	73.33	protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa]	[more]
XP_016903392.1	6.9e-27	72.22	PREDICTED: uncharacterized protein LOC107992162, partial [Cucumis melo]	[more]
KAA0044862.1	2.0e-26	72.22	protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa]	[more]
XP_008463110.1	4.5e-26	71.91	PREDICTED: uncharacterized protein LOC103501336 [Cucumis melo]	[more]

BLAST of HG10003398 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DTY1	1.5e-27	73.33	Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TCZ3	1.5e-27	73.33	Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S4E594	3.4e-27	72.22	uncharacterized protein LOC107992162 OS=Cucumis melo OX=3656 GN=LOC107992162 PE=...	[more]
A0A5A7TNE6	9.8e-27	72.22	Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CIV7	2.2e-26	71.91	uncharacterized protein LOC103501336 OS=Cucumis melo OX=3656 GN=LOC103501336 PE=...	[more]

BLAST of HG10003398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003398.1	HG10003398.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding