Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTATTTTGAATCAGCTGAAGCGTCATGTTGGGTCAAAAGCACTTAAATTGCATATTGGTTATCCACAGTTTATCTGTGGCATTCTGCTGACTCAAAATCCAGATCTGCTGGACTCTACTGAGCCTATTGGGTCTTCTCCAAGTTTGCTATCTATTCACCCCAAGCTGCTACAGGGGCATCATATTTCTGATCTTGACACCGCGGGTTAAAATATTACTCCTAATGCTCCATGCAAGTCTTATTAATCTTCATTTGGGAGTCGTATTCTGCATATGTTATCTAATGAATCTTGTGACCTTGATACTCTTTTGCCGAAACTCCAAGAACGAAAGTCTGATGTTGATGAGGTGTTGAGGGTGATGCAGAAACCTTATCCAGATTTAGTGTGGGTTCTTGAGGAATTATTGATTTTTTTTGAGAAATTGACAAAAATAGCCTCTTCATACATTATTTTACACCTTATCCAGATTTAGTGTGGGTTCTTGAGGAATTATTGATTTTTTTTGAGAAATTGACAAAAATAGCCTCTTCATACATTATTTTTAGAAAAATAGCCTATTTTTGAAAAATAAGTTTTTTTGGACCCCTTAATGATGAAGATGATGTAAGCATGATAAAACTTTGTATGTAAAATTACCTTTTTACCCTCCACTACTTAATAACTTTATTATATGTAATTAACAACCCAATTAATTAGTTTACCCACAAAATTAATTGTTTTCTAATAAATTAATTATTAACCCACCAAAAGTAATATTTCCTTAATTTAATTAATTAATTTATCCACAAAATTAATTTTTCTACTTTATCCAAACTTATTACATCCACCAACCCCTTTTAACTACACACAACCACCACACACAACCATCTCTCTTCACACAACTTTACTCTCAAAATTATACTCTTCTCTCCTCTCAAAATTCTCACAACTCTCTACCACTCACATCTCTCTTCACACAACTCCAAAAGGTATGTATTTTCTTCATTCAACATTTTCCCCCAATTTTGTTAAAGATATCATGTTTTAGTACGATTTTTTTTACTGGCAATTACCTTTTTAATTTGTTTTGTTTTCCGACTAAGATGTTATACCAAAAAAATTATACTAGGTAATATTTGTGGAGGCCCGGCCGGGCTTCATACCATAGGACCGGGCCTCCACCAGGTAATCGAATGTGTGGTTTTAAATTGGAGTTTACCCGGCCGAGTTTTCACCTGGTGCACCCCGCGACTGGGTTCTCACCGAGTTTTGTCTTTTTGTATTTAATTTTTATTTAATTTTTAATATAATTTATCATCTCCCTTTAATTTATATATATTTTTAATATAATTTTACAAATTATACCCTTTTAAAATAGTTTTTAAAATGATATAATACAAATTATATCTATATGTAAAATAGTTTTTCAAATTATACCATTTCCTCCTTATTACACCTAACCAACCAACATTTAAGTCAAACCGCCTTTTTTACCTACCATCAAACACCCATTAATTATTTTAACAAAAATCAAAACATACATATCCACAACTCACCTAATTCTCTCAAATCACCTTATTCTCACAACTCATTTATTTCTCACAACTCATCTAATTCTTCACTAGACTACTCAAAGTTTAGATTCGTGAAGGTATGTATTTCATTTATTTAACATGTTATTTATTGATAAGCCTCTTTTAATGTTAGAATCATTTAATAAGTTACTACTTCAAATTCTCACTTACGGTTGACTGGTTTTGATTTGATGATAATACTTTCTGGTGAGATACATGCATGTTAATTGACCCAAAACTATTATCTATATTCATCTAACATTTCCACAAGAAGTAGTTTTAAAAGATACGGAAAATGGATGAGAGAAAAGAGGGTTTTTTGTTTTGAGACTCAGTCGGGCTTCACCGGGTCTACTCCCAAGGATGGACCAGGCAAACCAAGTAGCCAACTGGGAAGTGGCCTGGTGTAGCCCGACCAAGTCTAAAAAGGTTTACCTCGGGAGACGCCCGGCCGGGTGGACTCCCTACAGGGACTGATCTAGGAAGTGGCCCGGGTGGCCCAACCGGGCTTACATGGTGTTCTACCCGAGCTGGCATCCACCGAGCCGAGCCCATTCGGGAGGCTGACCTGGTAAGAGACTGGCCGGGTGGAAAATCAGATTTTTTTTCATTTTAAATTTTTTTGTTTTCTTTTTCCCATATTTTGTTTCATTTTATTTGTTGTTACAATAGTATACCATAACAAAATTAATTTTTTGTTCTAACAGTGTAGGTATACCTGAACCGGATCAATATTCTTATCTCATCACCCCGGTCAAAGGCCCAGCCAGGGCTAGACCGGGCGAAAAGTCAGTAGCTCTAATTCACACTACGCCCGGTCTACACTCGGTTAAGGCCCGACTGGGCTTAAACCCTAAAATCTTCCCTAATCCATTACCCGAACTTCACCCGGTGAAGACCGCCCTTGGCTTTAACCCTATACGCCTTAGCCCGCTCGTAACCTGGTGA
mRNA sequence
ATGGAGTTTATTTTGAATCAGCTGAAGCGTCATGTTGGGTCAAAAGCACTTAAATTGCATATTGGTTATCCACAGTTTATCTGTGGCATTCTGCTGACTCAAAATCCAGATCTGCTGGACTCTACTGAGCCTATTGGGTCTTCTCCAAGTTTGCTATCTATTCACCCCAAGCTGCTACAGGGGCATCATATTTCTGATCTTGACACCGCGGGTATACCTGAACCGGATCAATATTCTTATCTCATCACCCCGGTCAAAGGCCCAGCCAGGGCTAGACCGGGCGAAAAGTCAGTAGCTCTAATTCACACTACGCCCGGTCTACACTCGGTTAAGGCCCGACTGGGCTTAAACCCTAAAATCTTCCCTAATCCATTACCCGAACTTCACCCGGTGAAGACCGCCCTTGGCTTTAACCCTATACGCCTTAGCCCGCTCGTAACCTGGTGA
Coding sequence (CDS)
ATGGAGTTTATTTTGAATCAGCTGAAGCGTCATGTTGGGTCAAAAGCACTTAAATTGCATATTGGTTATCCACAGTTTATCTGTGGCATTCTGCTGACTCAAAATCCAGATCTGCTGGACTCTACTGAGCCTATTGGGTCTTCTCCAAGTTTGCTATCTATTCACCCCAAGCTGCTACAGGGGCATCATATTTCTGATCTTGACACCGCGGGTATACCTGAACCGGATCAATATTCTTATCTCATCACCCCGGTCAAAGGCCCAGCCAGGGCTAGACCGGGCGAAAAGTCAGTAGCTCTAATTCACACTACGCCCGGTCTACACTCGGTTAAGGCCCGACTGGGCTTAAACCCTAAAATCTTCCCTAATCCATTACCCGAACTTCACCCGGTGAAGACCGCCCTTGGCTTTAACCCTATACGCCTTAGCCCGCTCGTAACCTGGTGA
Protein sequence
MEFILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGHHISDLDTAGIPEPDQYSYLITPVKGPARARPGEKSVALIHTTPGLHSVKARLGLNPKIFPNPLPELHPVKTALGFNPIRLSPLVTW
Homology
BLAST of HG10002742 vs. NCBI nr
Match:
XP_038895944.1 (LOW QUALITY PROTEIN: tryptophan synthase beta chain 1-like [Benincasa hispida])
HSP 1 Score: 74.3 bits (181), Expect = 9.7e-10
Identity = 34/85 (40.00%), Postives = 57/85 (67.06%), Query Frame = 0
Query: 3 FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
F++ QL+RH+GS+AL+L I YP+ I GI+L+Q P LL + EPI + LL+ + KL QGH
Sbjct: 394 FVIGQLRRHIGSQALRLPIAYPRLIYGIMLSQKPYLLVANEPIAENLGLLNFNYKLFQGH 453
Query: 63 HISDLDTAG---IPEPDQYSYLITP 85
++S++ + + E ++++P
Sbjct: 454 YVSNIAPSSFIIVEEAPSIGFVMSP 478
BLAST of HG10002742 vs. NCBI nr
Match:
KAA0060390.1 (uncharacterized protein E6C27_scaffold22G001980 [Cucumis melo var. makuwa] >TYK22130.1 uncharacterized protein E5676_scaffold318G001360 [Cucumis melo var. makuwa])
HSP 1 Score: 65.5 bits (158), Expect = 4.5e-07
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0
Query: 3 FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
FI NQL RHVGS +KL I P+F G+LL N +L +++ G P LS+ KL QG
Sbjct: 226 FIYNQLLRHVGSFGVKLSIALPRFFSGLLLHLNAAILTTSDAPGPDPKTLSLSYKLFQGS 285
Query: 63 HISDLDTAG 72
H+ D+D G
Sbjct: 286 HVPDIDHDG 294
BLAST of HG10002742 vs. NCBI nr
Match:
TYK19273.1 (uncharacterized protein E5676_scaffold1493G00820 [Cucumis melo var. makuwa])
HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0
Query: 3 FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
FI NQL RHVGS +KL I P+F G+LL N +L ++E +P LS+ +L QG+
Sbjct: 142 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAVLTTSEAPSPNPKTLSLSYRLFQGN 201
Query: 63 HISDLD 69
H+SD+D
Sbjct: 202 HVSDID 207
BLAST of HG10002742 vs. NCBI nr
Match:
XP_008461533.1 (PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo])
HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0
Query: 3 FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
FI NQL RHVGS +KL I P+F G+LL N +L +++ GS P LS+ +L QG
Sbjct: 375 FIYNQLLRHVGSFGVKLSIALPRFFSGLLLHLNVVVLTTSDAPGSDPKTLSLSYRLFQGS 434
Query: 63 HISDLD 69
H+ D+D
Sbjct: 435 HVPDID 440
BLAST of HG10002742 vs. NCBI nr
Match:
KAA0045245.1 (uncharacterized protein E6C27_scaffold30G002610 [Cucumis melo var. makuwa])
HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0
Query: 3 FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
FI NQL RHVGS +KL I P+F G+LL N +L ++E +P LS+ +L QG+
Sbjct: 64 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAVLTTSEAPSPNPKTLSLSYRLFQGN 123
Query: 63 HISDLD 69
H+SD+D
Sbjct: 124 HVSDID 129
BLAST of HG10002742 vs. ExPASy TrEMBL
Match:
A0A5A7UZ60 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001360 PE=4 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0
Query: 3 FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
FI NQL RHVGS +KL I P+F G+LL N +L +++ G P LS+ KL QG
Sbjct: 226 FIYNQLLRHVGSFGVKLSIALPRFFSGLLLHLNAAILTTSDAPGPDPKTLSLSYKLFQGS 285
Query: 63 HISDLDTAG 72
H+ D+D G
Sbjct: 286 HVPDIDHDG 294
BLAST of HG10002742 vs. ExPASy TrEMBL
Match:
A0A5A7TV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G002610 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 6.3e-07
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0
Query: 3 FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
FI NQL RHVGS +KL I P+F G+LL N +L ++E +P LS+ +L QG+
Sbjct: 64 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAVLTTSEAPSPNPKTLSLSYRLFQGN 123
Query: 63 HISDLD 69
H+SD+D
Sbjct: 124 HVSDID 129
BLAST of HG10002742 vs. ExPASy TrEMBL
Match:
A0A5D3D6Z9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00820 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 6.3e-07
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0
Query: 3 FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
FI NQL RHVGS +KL I P+F G+LL N +L ++E +P LS+ +L QG+
Sbjct: 142 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAVLTTSEAPSPNPKTLSLSYRLFQGN 201
Query: 63 HISDLD 69
H+SD+D
Sbjct: 202 HVSDID 207
BLAST of HG10002742 vs. ExPASy TrEMBL
Match:
A0A1S3CG84 (uncharacterized protein LOC103500104 OS=Cucumis melo OX=3656 GN=LOC103500104 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 6.3e-07
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0
Query: 3 FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
FI NQL RHVGS +KL I P+F G+LL N +L +++ GS P LS+ +L QG
Sbjct: 375 FIYNQLLRHVGSFGVKLSIALPRFFSGLLLHLNVVVLTTSDAPGSDPKTLSLSYRLFQGS 434
Query: 63 HISDLD 69
H+ D+D
Sbjct: 435 HVPDID 440
BLAST of HG10002742 vs. ExPASy TrEMBL
Match:
A0A5D3BBA9 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00010 PE=4 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0
Query: 2 EFILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQG 61
EFI N L RHV + A+ + I +P+ + G LL Q P +L S + IG++P L+ + +L QG
Sbjct: 136 EFIFNHLLRHVDTFAIHIPICFPRILSGFLLAQQPTILTSLDTIGTAPRLIPLSMRLFQG 195
Query: 62 HHISDLDTA 71
HI D+ A
Sbjct: 196 SHIPDVAAA 204
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038895944.1 | 9.7e-10 | 40.00 | LOW QUALITY PROTEIN: tryptophan synthase beta chain 1-like [Benincasa hispida] | [more] |
KAA0060390.1 | 4.5e-07 | 46.38 | uncharacterized protein E6C27_scaffold22G001980 [Cucumis melo var. makuwa] >TYK2... | [more] |
TYK19273.1 | 1.3e-06 | 46.97 | uncharacterized protein E5676_scaffold1493G00820 [Cucumis melo var. makuwa] | [more] |
XP_008461533.1 | 1.3e-06 | 46.97 | PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo] | [more] |
KAA0045245.1 | 1.3e-06 | 46.97 | uncharacterized protein E6C27_scaffold30G002610 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UZ60 | 2.2e-07 | 46.38 | Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v... | [more] |
A0A5A7TV38 | 6.3e-07 | 46.97 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3D6Z9 | 6.3e-07 | 46.97 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3CG84 | 6.3e-07 | 46.97 | uncharacterized protein LOC103500104 OS=Cucumis melo OX=3656 GN=LOC103500104 PE=... | [more] |
A0A5D3BBA9 | 1.1e-06 | 42.03 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
Match Name | E-value | Identity | Description | |