HG10002742 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002742
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionEnvelope-like protein
LocationChr11: 11100562 .. 11103070 (-)
RNA-Seq ExpressionHG10002742
SyntenyHG10002742
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTATTTTGAATCAGCTGAAGCGTCATGTTGGGTCAAAAGCACTTAAATTGCATATTGGTTATCCACAGTTTATCTGTGGCATTCTGCTGACTCAAAATCCAGATCTGCTGGACTCTACTGAGCCTATTGGGTCTTCTCCAAGTTTGCTATCTATTCACCCCAAGCTGCTACAGGGGCATCATATTTCTGATCTTGACACCGCGGGTTAAAATATTACTCCTAATGCTCCATGCAAGTCTTATTAATCTTCATTTGGGAGTCGTATTCTGCATATGTTATCTAATGAATCTTGTGACCTTGATACTCTTTTGCCGAAACTCCAAGAACGAAAGTCTGATGTTGATGAGGTGTTGAGGGTGATGCAGAAACCTTATCCAGATTTAGTGTGGGTTCTTGAGGAATTATTGATTTTTTTTGAGAAATTGACAAAAATAGCCTCTTCATACATTATTTTACACCTTATCCAGATTTAGTGTGGGTTCTTGAGGAATTATTGATTTTTTTTGAGAAATTGACAAAAATAGCCTCTTCATACATTATTTTTAGAAAAATAGCCTATTTTTGAAAAATAAGTTTTTTTGGACCCCTTAATGATGAAGATGATGTAAGCATGATAAAACTTTGTATGTAAAATTACCTTTTTACCCTCCACTACTTAATAACTTTATTATATGTAATTAACAACCCAATTAATTAGTTTACCCACAAAATTAATTGTTTTCTAATAAATTAATTATTAACCCACCAAAAGTAATATTTCCTTAATTTAATTAATTAATTTATCCACAAAATTAATTTTTCTACTTTATCCAAACTTATTACATCCACCAACCCCTTTTAACTACACACAACCACCACACACAACCATCTCTCTTCACACAACTTTACTCTCAAAATTATACTCTTCTCTCCTCTCAAAATTCTCACAACTCTCTACCACTCACATCTCTCTTCACACAACTCCAAAAGGTATGTATTTTCTTCATTCAACATTTTCCCCCAATTTTGTTAAAGATATCATGTTTTAGTACGATTTTTTTTACTGGCAATTACCTTTTTAATTTGTTTTGTTTTCCGACTAAGATGTTATACCAAAAAAATTATACTAGGTAATATTTGTGGAGGCCCGGCCGGGCTTCATACCATAGGACCGGGCCTCCACCAGGTAATCGAATGTGTGGTTTTAAATTGGAGTTTACCCGGCCGAGTTTTCACCTGGTGCACCCCGCGACTGGGTTCTCACCGAGTTTTGTCTTTTTGTATTTAATTTTTATTTAATTTTTAATATAATTTATCATCTCCCTTTAATTTATATATATTTTTAATATAATTTTACAAATTATACCCTTTTAAAATAGTTTTTAAAATGATATAATACAAATTATATCTATATGTAAAATAGTTTTTCAAATTATACCATTTCCTCCTTATTACACCTAACCAACCAACATTTAAGTCAAACCGCCTTTTTTACCTACCATCAAACACCCATTAATTATTTTAACAAAAATCAAAACATACATATCCACAACTCACCTAATTCTCTCAAATCACCTTATTCTCACAACTCATTTATTTCTCACAACTCATCTAATTCTTCACTAGACTACTCAAAGTTTAGATTCGTGAAGGTATGTATTTCATTTATTTAACATGTTATTTATTGATAAGCCTCTTTTAATGTTAGAATCATTTAATAAGTTACTACTTCAAATTCTCACTTACGGTTGACTGGTTTTGATTTGATGATAATACTTTCTGGTGAGATACATGCATGTTAATTGACCCAAAACTATTATCTATATTCATCTAACATTTCCACAAGAAGTAGTTTTAAAAGATACGGAAAATGGATGAGAGAAAAGAGGGTTTTTTGTTTTGAGACTCAGTCGGGCTTCACCGGGTCTACTCCCAAGGATGGACCAGGCAAACCAAGTAGCCAACTGGGAAGTGGCCTGGTGTAGCCCGACCAAGTCTAAAAAGGTTTACCTCGGGAGACGCCCGGCCGGGTGGACTCCCTACAGGGACTGATCTAGGAAGTGGCCCGGGTGGCCCAACCGGGCTTACATGGTGTTCTACCCGAGCTGGCATCCACCGAGCCGAGCCCATTCGGGAGGCTGACCTGGTAAGAGACTGGCCGGGTGGAAAATCAGATTTTTTTTCATTTTAAATTTTTTTGTTTTCTTTTTCCCATATTTTGTTTCATTTTATTTGTTGTTACAATAGTATACCATAACAAAATTAATTTTTTGTTCTAACAGTGTAGGTATACCTGAACCGGATCAATATTCTTATCTCATCACCCCGGTCAAAGGCCCAGCCAGGGCTAGACCGGGCGAAAAGTCAGTAGCTCTAATTCACACTACGCCCGGTCTACACTCGGTTAAGGCCCGACTGGGCTTAAACCCTAAAATCTTCCCTAATCCATTACCCGAACTTCACCCGGTGAAGACCGCCCTTGGCTTTAACCCTATACGCCTTAGCCCGCTCGTAACCTGGTGA

mRNA sequence

ATGGAGTTTATTTTGAATCAGCTGAAGCGTCATGTTGGGTCAAAAGCACTTAAATTGCATATTGGTTATCCACAGTTTATCTGTGGCATTCTGCTGACTCAAAATCCAGATCTGCTGGACTCTACTGAGCCTATTGGGTCTTCTCCAAGTTTGCTATCTATTCACCCCAAGCTGCTACAGGGGCATCATATTTCTGATCTTGACACCGCGGGTATACCTGAACCGGATCAATATTCTTATCTCATCACCCCGGTCAAAGGCCCAGCCAGGGCTAGACCGGGCGAAAAGTCAGTAGCTCTAATTCACACTACGCCCGGTCTACACTCGGTTAAGGCCCGACTGGGCTTAAACCCTAAAATCTTCCCTAATCCATTACCCGAACTTCACCCGGTGAAGACCGCCCTTGGCTTTAACCCTATACGCCTTAGCCCGCTCGTAACCTGGTGA

Coding sequence (CDS)

ATGGAGTTTATTTTGAATCAGCTGAAGCGTCATGTTGGGTCAAAAGCACTTAAATTGCATATTGGTTATCCACAGTTTATCTGTGGCATTCTGCTGACTCAAAATCCAGATCTGCTGGACTCTACTGAGCCTATTGGGTCTTCTCCAAGTTTGCTATCTATTCACCCCAAGCTGCTACAGGGGCATCATATTTCTGATCTTGACACCGCGGGTATACCTGAACCGGATCAATATTCTTATCTCATCACCCCGGTCAAAGGCCCAGCCAGGGCTAGACCGGGCGAAAAGTCAGTAGCTCTAATTCACACTACGCCCGGTCTACACTCGGTTAAGGCCCGACTGGGCTTAAACCCTAAAATCTTCCCTAATCCATTACCCGAACTTCACCCGGTGAAGACCGCCCTTGGCTTTAACCCTATACGCCTTAGCCCGCTCGTAACCTGGTGA

Protein sequence

MEFILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGHHISDLDTAGIPEPDQYSYLITPVKGPARARPGEKSVALIHTTPGLHSVKARLGLNPKIFPNPLPELHPVKTALGFNPIRLSPLVTW
Homology
[Close]
BLAST of HG10002742 vs. NCBI nr
Match: XP_038895944.1 (LOW QUALITY PROTEIN: tryptophan synthase beta chain 1-like [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 9.7e-10
Identity = 34/85 (40.00%), Postives = 57/85 (67.06%), Query Frame = 0 

Query: 3   FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
           F++ QL+RH+GS+AL+L I YP+ I GI+L+Q P LL + EPI  +  LL+ + KL QGH
Sbjct: 394 FVIGQLRRHIGSQALRLPIAYPRLIYGIMLSQKPYLLVANEPIAENLGLLNFNYKLFQGH 453

Query: 63  HISDLDTAG---IPEPDQYSYLITP 85
           ++S++  +    + E     ++++P
Sbjct: 454 YVSNIAPSSFIIVEEAPSIGFVMSP 478

[Close]
BLAST of HG10002742 vs. NCBI nr
Match: KAA0060390.1 (uncharacterized protein E6C27_scaffold22G001980 [Cucumis melo var. makuwa] >TYK22130.1 uncharacterized protein E5676_scaffold318G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-07
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 3   FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
           FI NQL RHVGS  +KL I  P+F  G+LL  N  +L +++  G  P  LS+  KL QG 
Sbjct: 226 FIYNQLLRHVGSFGVKLSIALPRFFSGLLLHLNAAILTTSDAPGPDPKTLSLSYKLFQGS 285

Query: 63  HISDLDTAG 72
           H+ D+D  G
Sbjct: 286 HVPDIDHDG 294

[Close]
BLAST of HG10002742 vs. NCBI nr
Match: TYK19273.1 (uncharacterized protein E5676_scaffold1493G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 3   FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
           FI NQL RHVGS  +KL I  P+F  G+LL  N  +L ++E    +P  LS+  +L QG+
Sbjct: 142 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAVLTTSEAPSPNPKTLSLSYRLFQGN 201

Query: 63  HISDLD 69
           H+SD+D
Sbjct: 202 HVSDID 207

[Close]
BLAST of HG10002742 vs. NCBI nr
Match: XP_008461533.1 (PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 3   FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
           FI NQL RHVGS  +KL I  P+F  G+LL  N  +L +++  GS P  LS+  +L QG 
Sbjct: 375 FIYNQLLRHVGSFGVKLSIALPRFFSGLLLHLNVVVLTTSDAPGSDPKTLSLSYRLFQGS 434

Query: 63  HISDLD 69
           H+ D+D
Sbjct: 435 HVPDID 440

[Close]
BLAST of HG10002742 vs. NCBI nr
Match: KAA0045245.1 (uncharacterized protein E6C27_scaffold30G002610 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 3   FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
           FI NQL RHVGS  +KL I  P+F  G+LL  N  +L ++E    +P  LS+  +L QG+
Sbjct: 64  FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAVLTTSEAPSPNPKTLSLSYRLFQGN 123

Query: 63  HISDLD 69
           H+SD+D
Sbjct: 124 HVSDID 129

[Close]
BLAST of HG10002742 vs. ExPASy TrEMBL
Match: A0A5A7UZ60 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001360 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 3   FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
           FI NQL RHVGS  +KL I  P+F  G+LL  N  +L +++  G  P  LS+  KL QG 
Sbjct: 226 FIYNQLLRHVGSFGVKLSIALPRFFSGLLLHLNAAILTTSDAPGPDPKTLSLSYKLFQGS 285

Query: 63  HISDLDTAG 72
           H+ D+D  G
Sbjct: 286 HVPDIDHDG 294

[Close]
BLAST of HG10002742 vs. ExPASy TrEMBL
Match: A0A5A7TV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G002610 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.3e-07
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 3   FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
           FI NQL RHVGS  +KL I  P+F  G+LL  N  +L ++E    +P  LS+  +L QG+
Sbjct: 64  FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAVLTTSEAPSPNPKTLSLSYRLFQGN 123

Query: 63  HISDLD 69
           H+SD+D
Sbjct: 124 HVSDID 129

[Close]
BLAST of HG10002742 vs. ExPASy TrEMBL
Match: A0A5D3D6Z9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00820 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.3e-07
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 3   FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
           FI NQL RHVGS  +KL I  P+F  G+LL  N  +L ++E    +P  LS+  +L QG+
Sbjct: 142 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAVLTTSEAPSPNPKTLSLSYRLFQGN 201

Query: 63  HISDLD 69
           H+SD+D
Sbjct: 202 HVSDID 207

[Close]
BLAST of HG10002742 vs. ExPASy TrEMBL
Match: A0A1S3CG84 (uncharacterized protein LOC103500104 OS=Cucumis melo OX=3656 GN=LOC103500104 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.3e-07
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 3   FILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQGH 62
           FI NQL RHVGS  +KL I  P+F  G+LL  N  +L +++  GS P  LS+  +L QG 
Sbjct: 375 FIYNQLLRHVGSFGVKLSIALPRFFSGLLLHLNVVVLTTSDAPGSDPKTLSLSYRLFQGS 434

Query: 63  HISDLD 69
           H+ D+D
Sbjct: 435 HVPDID 440

[Close]
BLAST of HG10002742 vs. ExPASy TrEMBL
Match: A0A5D3BBA9 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00010 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0 

Query: 2   EFILNQLKRHVGSKALKLHIGYPQFICGILLTQNPDLLDSTEPIGSSPSLLSIHPKLLQG 61
           EFI N L RHV + A+ + I +P+ + G LL Q P +L S + IG++P L+ +  +L QG
Sbjct: 136 EFIFNHLLRHVDTFAIHIPICFPRILSGFLLAQQPTILTSLDTIGTAPRLIPLSMRLFQG 195

Query: 62  HHISDLDTA 71
            HI D+  A
Sbjct: 196 SHIPDVAAA 204

The following BLAST results are available for this feature:
BLAST of HG10002742 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038895944.19.7e-1040.00LOW QUALITY PROTEIN: tryptophan synthase beta chain 1-like [Benincasa hispida][more]
KAA0060390.14.5e-0746.38uncharacterized protein E6C27_scaffold22G001980 [Cucumis melo var. makuwa] >TYK2... [more]
TYK19273.11.3e-0646.97uncharacterized protein E5676_scaffold1493G00820 [Cucumis melo var. makuwa][more]
XP_008461533.11.3e-0646.97PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo][more]
KAA0045245.11.3e-0646.97uncharacterized protein E6C27_scaffold30G002610 [Cucumis melo var. makuwa][more]
BLAST of HG10002742 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10002742 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UZ602.2e-0746.38Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v... [more]
A0A5A7TV386.3e-0746.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D6Z96.3e-0746.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CG846.3e-0746.97uncharacterized protein LOC103500104 OS=Cucumis melo OX=3656 GN=LOC103500104 PE=... [more]
A0A5D3BBA91.1e-0642.03Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of HG10002742 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002742.1HG10002742.1mRNA