HG10002447 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002447
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Serine/arginine repetitive matrix protein 2
Location	Chr11: 6846665 .. 6847244 (+)
RNA-Seq Expression	HG10002447
Synteny	HG10002447

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCTCTTCTCTATCCAAATCCCAAGCCCTAACCCTAACCCTAAATCTCCTCCGTCCTCATCCTCGTTCTTTATCTCCCATTCACTCCCTCTTCCGCCGTACTTTCTCCTCCCCTTCCGATAACGATCTCACCGACCTCTCTGAATCTCCTTCCTCCGATCCCCTTCTTCGGAACCTTGAGGACGCTATTCAACGGATCCTCGTTCGCCGATCTGCCCCCGATTGGCTCCCCTTCGTTCCAGGCGCTTCATATTGGGTTCCTCTGCCTTCTAATTCTCATTTACCTCCAATTGCCAACGTTCTTCACAATTTAGCTAACCCTCTCTCTCCAGAACAATCCTTGTCTACCACTACCGTTCGTGGCTGGCCCTCTTCTAATTACTTCATTCACGGTATTCCTCTTCTTTCGTTTCGTTTTCATTTTATATGCATTTTCCTTTTTTTTTTTTATTATTATTTATTAAGAAGAAGAAAAAATCCCCTTCATCATAGGTCCTCATCTCCCTTCTCTTGAGCCGGAGGTTGAGACTACGTCGGCGGAATGTGATGCTTCCCCTGACCACGAGGAAGGATGA

mRNA sequence

ATGTCTCTCTCTTCTCTATCCAAATCCCAAGCCCTAACCCTAACCCTAAATCTCCTCCGTCCTCATCCTCGTTCTTTATCTCCCATTCACTCCCTCTTCCGCCGTACTTTCTCCTCCCCTTCCGATAACGATCTCACCGACCTCTCTGAATCTCCTTCCTCCGATCCCCTTCTTCGGAACCTTGAGGACGCTATTCAACGGATCCTCGTTCGCCGATCTGCCCCCGATTGGCTCCCCTTCGTTCCAGGCGCTTCATATTGGGTTCCTCTGCCTTCTAATTCTCATTTACCTCCAATTGCCAACGTTCTTCACAATTTAGCTAACCCTCTCTCTCCAGAACAATCCTTGTCTACCACTACCGTTCGTGGCTGGCCCTCTTCTAATTACTTCATTCACGGTCCTCATCTCCCTTCTCTTGAGCCGGAGGTTGAGACTACGTCGGCGGAATGTGATGCTTCCCCTGACCACGAGGAAGGATGA

Coding sequence (CDS)

ATGTCTCTCTCTTCTCTATCCAAATCCCAAGCCCTAACCCTAACCCTAAATCTCCTCCGTCCTCATCCTCGTTCTTTATCTCCCATTCACTCCCTCTTCCGCCGTACTTTCTCCTCCCCTTCCGATAACGATCTCACCGACCTCTCTGAATCTCCTTCCTCCGATCCCCTTCTTCGGAACCTTGAGGACGCTATTCAACGGATCCTCGTTCGCCGATCTGCCCCCGATTGGCTCCCCTTCGTTCCAGGCGCTTCATATTGGGTTCCTCTGCCTTCTAATTCTCATTTACCTCCAATTGCCAACGTTCTTCACAATTTAGCTAACCCTCTCTCTCCAGAACAATCCTTGTCTACCACTACCGTTCGTGGCTGGCCCTCTTCTAATTACTTCATTCACGGTCCTCATCTCCCTTCTCTTGAGCCGGAGGTTGAGACTACGTCGGCGGAATGTGATGCTTCCCCTGACCACGAGGAAGGATGA

Protein sequence

MSLSSLSKSQALTLTLNLLRPHPRSLSPIHSLFRRTFSSPSDNDLTDLSESPSSDPLLRNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLSTTTVRGWPSSNYFIHGPHLPSLEPEVETTSAECDASPDHEEG

Homology

[Close]

BLAST of HG10002447 vs. NCBI nr
Match: XP_004135962.1 (uncharacterized protein LOC101214133 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 3.0e-65
Identity = 135/160 (84.38%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MSLSSLSKSQALTLTLNLLRPHPRSLSPIHSLFRRTFSSPSDNDLTDLSESP-SSDPLLR 60
           MSLS+LSK ++LTLTLNLLRPH         LFRR FSSPSD+DLTDL ESP SSDPLLR
Sbjct: 1   MSLSALSKPKSLTLTLNLLRPH---------LFRRPFSSPSDHDLTDLPESPSSSDPLLR 60

Query: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLSTT 120
           NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVL NLANPLSPEQSLSTT
Sbjct: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLRNLANPLSPEQSLSTT 120

Query: 121 TVRGWPSSNYFIHGPHLPSLEPEVETTSAECDASPDHEEG 160
           TVRGWPSS+YFI G HLPSL+PEV+TTS ECDAS DHEEG
Sbjct: 121 TVRGWPSSHYFIQGTHLPSLDPEVDTTSTECDASLDHEEG 151

[Close]

BLAST of HG10002447 vs. NCBI nr
Match: KAE8646378.1 (hypothetical protein Csa_015587 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 3.0e-65
Identity = 135/160 (84.38%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MSLSSLSKSQALTLTLNLLRPHPRSLSPIHSLFRRTFSSPSDNDLTDLSESP-SSDPLLR 60
           MSLS+LSK ++LTLTLNLLRPH         LFRR FSSPSD+DLTDL ESP SSDPLLR
Sbjct: 1   MSLSALSKPKSLTLTLNLLRPH---------LFRRPFSSPSDHDLTDLPESPSSSDPLLR 60

Query: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLSTT 120
           NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVL NLANPLSPEQSLSTT
Sbjct: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLRNLANPLSPEQSLSTT 120

Query: 121 TVRGWPSSNYFIHGPHLPSLEPEVETTSAECDASPDHEEG 160
           TVRGWPSS+YFI G HLPSL+PEV+TTS ECDAS DHEEG
Sbjct: 121 TVRGWPSSHYFIQGTHLPSLDPEVDTTSTECDASLDHEEG 151

[Close]

BLAST of HG10002447 vs. NCBI nr
Match: XP_022980733.1 (uncharacterized protein LOC111480015 isoform X1 [Cucurbita maxima])

HSP 1 Score: 251.9 bits (642), Expect = 3.6e-63
Identity = 134/161 (83.23%), Postives = 141/161 (87.58%), Query Frame = 0


Query: 1   MSLS-SLSKSQALTLTLNLLRPHPRSLS-PIHSLFRRTFSSPSDNDLTDLSESPSSDPLL 60
           MSLS S S+S  LTLTLNLLRP PR    P+ SL RRTFSS +DNDLTDLSESPSSDPLL
Sbjct: 1   MSLSLSKSRSLTLTLTLNLLRPRPRPRPFPLQSLDRRTFSSSTDNDLTDLSESPSSDPLL 60

Query: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLST 120
           RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIAN+LHN ANPLSPEQSLST
Sbjct: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLST 120

Query: 121 TTVRGWPSSNYFIHGPHLPSLEPEVETTSAECDAS--PDHE 158
           TTVRGWPSS++FI G HLPSLEPEVET SAEC+AS   DHE
Sbjct: 121 TTVRGWPSSHFFIQGSHLPSLEPEVETNSAECEASQHSDHE 161

[Close]

BLAST of HG10002447 vs. NCBI nr
Match: KAG7018211.1 (hypothetical protein SDJN02_20079, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.9 bits (642), Expect = 3.6e-63
Identity = 135/161 (83.85%), Postives = 141/161 (87.58%), Query Frame = 0


Query: 1   MSLS-SLSKSQALTLTLNLLRPHPRSLSPIHSLFRRTFSSPSDNDLTDLSESPSSDPLLR 60
           MSLS S S+S  LTLTLNLLRP    LSP+ SL RRTFSS  DNDLTDLSESPSSDPLLR
Sbjct: 1   MSLSLSKSRSLTLTLTLNLLRPR---LSPLQSLDRRTFSSSPDNDLTDLSESPSSDPLLR 60

Query: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLSTT 120
           NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIAN+LHN ANPLSPEQSLSTT
Sbjct: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLSTT 120

Query: 121 TVRGWPSSNYFIHGPHLPSLEPEVETTSAECDAS--PDHEE 159
           TVRGWPSS++FI G HLPSLEPEVET SAEC+AS   DHEE
Sbjct: 121 TVRGWPSSHFFIQGAHLPSLEPEVETNSAECEASQHSDHEE 158

[Close]

BLAST of HG10002447 vs. NCBI nr
Match: XP_022956127.1 (uncharacterized protein LOC111457911 isoform X2 [Cucurbita moschata])

HSP 1 Score: 251.9 bits (642), Expect = 3.6e-63
Identity = 135/161 (83.85%), Postives = 141/161 (87.58%), Query Frame = 0


Query: 1   MSLS-SLSKSQALTLTLNLLRPHPRSLSPIHSLFRRTFSSPSDNDLTDLSESPSSDPLLR 60
           MSLS S S+S  LTLTLNLLRP    LSP+ SL RRTFSS  DNDLTDLSESPSSDPLLR
Sbjct: 1   MSLSLSKSRSLTLTLTLNLLRPR---LSPLQSLGRRTFSSSPDNDLTDLSESPSSDPLLR 60

Query: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLSTT 120
           NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIAN+LHN ANPLSPEQSLSTT
Sbjct: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLSTT 120

Query: 121 TVRGWPSSNYFIHGPHLPSLEPEVETTSAECDAS--PDHEE 159
           TVRGWPSS++FI G HLPSLEPEVET SAEC+AS   DHEE
Sbjct: 121 TVRGWPSSHFFIQGAHLPSLEPEVETNSAECEASQHSDHEE 158

[Close]

BLAST of HG10002447 vs. ExPASy TrEMBL
Match: A0A0A0K9L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G419630 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65
Identity = 135/160 (84.38%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MSLSSLSKSQALTLTLNLLRPHPRSLSPIHSLFRRTFSSPSDNDLTDLSESP-SSDPLLR 60
           MSLS+LSK ++LTLTLNLLRPH         LFRR FSSPSD+DLTDL ESP SSDPLLR
Sbjct: 1   MSLSALSKPKSLTLTLNLLRPH---------LFRRPFSSPSDHDLTDLPESPSSSDPLLR 60

Query: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLSTT 120
           NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVL NLANPLSPEQSLSTT
Sbjct: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLRNLANPLSPEQSLSTT 120

Query: 121 TVRGWPSSNYFIHGPHLPSLEPEVETTSAECDASPDHEEG 160
           TVRGWPSS+YFI G HLPSL+PEV+TTS ECDAS DHEEG
Sbjct: 121 TVRGWPSSHYFIQGTHLPSLDPEVDTTSTECDASLDHEEG 151

[Close]

BLAST of HG10002447 vs. ExPASy TrEMBL
Match: A0A6J1J031 (uncharacterized protein LOC111480015 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480015 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.8e-63
Identity = 134/161 (83.23%), Postives = 141/161 (87.58%), Query Frame = 0


Query: 1   MSLS-SLSKSQALTLTLNLLRPHPRSLS-PIHSLFRRTFSSPSDNDLTDLSESPSSDPLL 60
           MSLS S S+S  LTLTLNLLRP PR    P+ SL RRTFSS +DNDLTDLSESPSSDPLL
Sbjct: 1   MSLSLSKSRSLTLTLTLNLLRPRPRPRPFPLQSLDRRTFSSSTDNDLTDLSESPSSDPLL 60

Query: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLST 120
           RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIAN+LHN ANPLSPEQSLST
Sbjct: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLST 120

Query: 121 TTVRGWPSSNYFIHGPHLPSLEPEVETTSAECDAS--PDHE 158
           TTVRGWPSS++FI G HLPSLEPEVET SAEC+AS   DHE
Sbjct: 121 TTVRGWPSSHFFIQGSHLPSLEPEVETNSAECEASQHSDHE 161

[Close]

BLAST of HG10002447 vs. ExPASy TrEMBL
Match: A0A6J1J062 (uncharacterized protein LOC111480015 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480015 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.8e-63
Identity = 134/161 (83.23%), Postives = 141/161 (87.58%), Query Frame = 0


Query: 1   MSLS-SLSKSQALTLTLNLLRPHPRSLS-PIHSLFRRTFSSPSDNDLTDLSESPSSDPLL 60
           MSLS S S+S  LTLTLNLLRP PR    P+ SL RRTFSS +DNDLTDLSESPSSDPLL
Sbjct: 1   MSLSLSKSRSLTLTLTLNLLRPRPRPRPFPLQSLDRRTFSSSTDNDLTDLSESPSSDPLL 60

Query: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLST 120
           RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIAN+LHN ANPLSPEQSLST
Sbjct: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLST 120

Query: 121 TTVRGWPSSNYFIHGPHLPSLEPEVETTSAECDAS--PDHE 158
           TTVRGWPSS++FI G HLPSLEPEVET SAEC+AS   DHE
Sbjct: 121 TTVRGWPSSHFFIQGSHLPSLEPEVETNSAECEASQHSDHE 161

[Close]

BLAST of HG10002447 vs. ExPASy TrEMBL
Match: A0A6J1GVG9 (uncharacterized protein LOC111457911 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457911 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.8e-63
Identity = 135/161 (83.85%), Postives = 141/161 (87.58%), Query Frame = 0


Query: 1   MSLS-SLSKSQALTLTLNLLRPHPRSLSPIHSLFRRTFSSPSDNDLTDLSESPSSDPLLR 60
           MSLS S S+S  LTLTLNLLRP    LSP+ SL RRTFSS  DNDLTDLSESPSSDPLLR
Sbjct: 1   MSLSLSKSRSLTLTLTLNLLRPR---LSPLQSLGRRTFSSSPDNDLTDLSESPSSDPLLR 60

Query: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLSTT 120
           NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIAN+LHN ANPLSPEQSLSTT
Sbjct: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLSTT 120

Query: 121 TVRGWPSSNYFIHGPHLPSLEPEVETTSAECDAS--PDHEE 159
           TVRGWPSS++FI G HLPSLEPEVET SAEC+AS   DHEE
Sbjct: 121 TVRGWPSSHFFIQGAHLPSLEPEVETNSAECEASQHSDHEE 158

[Close]

BLAST of HG10002447 vs. ExPASy TrEMBL
Match: A0A6J1GVQ5 (uncharacterized protein LOC111457911 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457911 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.1e-63
Identity = 134/160 (83.75%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MSLS-SLSKSQALTLTLNLLRPHPRSLSPIHSLFRRTFSSPSDNDLTDLSESPSSDPLLR 60
           MSLS S S+S  LTLTLNLLRP    LSP+ SL RRTFSS  DNDLTDLSESPSSDPLLR
Sbjct: 1   MSLSLSKSRSLTLTLTLNLLRPR---LSPLQSLGRRTFSSSPDNDLTDLSESPSSDPLLR 60

Query: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSNSHLPPIANVLHNLANPLSPEQSLSTT 120
           NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIAN+LHN ANPLSPEQSLSTT
Sbjct: 61  NLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLSTT 120

Query: 121 TVRGWPSSNYFIHGPHLPSLEPEVETTSAECDAS--PDHE 158
           TVRGWPSS++FI G HLPSLEPEVET SAEC+AS   DHE
Sbjct: 121 TVRGWPSSHFFIQGAHLPSLEPEVETNSAECEASQHSDHE 157

[Close]

BLAST of HG10002447 vs. TAIR 10
Match: AT1G16840.4 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26
Identity = 75/158 (47.47%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 7   SKSQALTLTLNLLRPHPRSLSP-IHSLFRRTFSSPSDNDLTDL-----SESPSSDPLLRN 66
           S S++L+L+         SL P  H +  R+ SS    DL ++     S+SP SDPL++ 
Sbjct: 4   SFSRSLSLSKGRFAAASSSLLPSSHLVSFRSQSSDRRGDLYEIDTSAASQSP-SDPLIQK 63

Query: 67  LEDAIQRILVRRSAPDWLPFVPGASYWVPLP-SNSHLPPIANVLHNLANPLSPEQSLSTT 126
           LEDA+ RI VRR+ PDWLPFVPGASYWVP P S S    IA ++  LANPL+ E+SLST 
Sbjct: 64  LEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPLTHEESLSTN 123

Query: 127 TVRGWPSSNYFIHGPHLPSLEPEVETTSAECDASPDHE 158
           +  GWPSS+YF+ G     +E + ETTS     S D E
Sbjct: 124 SSHGWPSSDYFLKGVQPQLMETKTETTSNSESHSEDEE 160

[Close]

BLAST of HG10002447 vs. TAIR 10
Match: AT1G16840.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26
Identity = 75/158 (47.47%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 7   SKSQALTLTLNLLRPHPRSLSP-IHSLFRRTFSSPSDNDLTDL-----SESPSSDPLLRN 66
           S S++L+L+         SL P  H +  R+ SS    DL ++     S+SP SDPL++ 
Sbjct: 4   SFSRSLSLSKGRFAAASSSLLPSSHLVSFRSQSSDRRGDLYEIDTSAASQSP-SDPLIQK 63

Query: 67  LEDAIQRILVRRSAPDWLPFVPGASYWVPLP-SNSHLPPIANVLHNLANPLSPEQSLSTT 126
           LEDA+ RI VRR+ PDWLPFVPGASYWVP P S S    IA ++  LANPL+ E+SLST 
Sbjct: 64  LEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPLTHEESLSTN 123

Query: 127 TVRGWPSSNYFIHGPHLPSLEPEVETTSAECDASPDHE 158
           +  GWPSS+YF+ G     +E + ETTS     S D E
Sbjct: 124 SSHGWPSSDYFLKGVQPQLMETKTETTSNSESHSEDEE 160

[Close]

BLAST of HG10002447 vs. TAIR 10
Match: AT1G16840.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26
Identity = 75/158 (47.47%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 7   SKSQALTLTLNLLRPHPRSLSP-IHSLFRRTFSSPSDNDLTDL-----SESPSSDPLLRN 66
           S S++L+L+         SL P  H +  R+ SS    DL ++     S+SP SDPL++ 
Sbjct: 4   SFSRSLSLSKGRFAAASSSLLPSSHLVSFRSQSSDRRGDLYEIDTSAASQSP-SDPLIQK 63

Query: 67  LEDAIQRILVRRSAPDWLPFVPGASYWVPLP-SNSHLPPIANVLHNLANPLSPEQSLSTT 126
           LEDA+ RI VRR+ PDWLPFVPGASYWVP P S S    IA ++  LANPL+ E+SLST 
Sbjct: 64  LEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPLTHEESLSTN 123

Query: 127 TVRGWPSSNYFIHGPHLPSLEPEVETTSAECDASPDHE 158
           +  GWPSS+YF+ G     +E + ETTS     S D E
Sbjct: 124 SSHGWPSSDYFLKGVQPQLMETKTETTSNSESHSEDEE 160

[Close]

BLAST of HG10002447 vs. TAIR 10
Match: AT1G78890.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 8.5e-26
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 53  SSDPLLRNLEDAIQRILVRRSAPDWLPFVPGASYWVPLP-SNSHLPPIANVLHNLANPLS 112
           ++DPL+  LEDA+ RI+VRRSAPDWLPFVPGAS+WVP P S SH   IA ++  LANP+S
Sbjct: 54  AADPLVNKLEDAVHRIMVRRSAPDWLPFVPGASFWVPPPRSQSH--GIAKLVEKLANPIS 113

Query: 113 PEQSLSTTTVRGWPSSNYFIHGPHLPSLEPEVETTSA 149
            E+S+S ++VRGWP S+YFI G    S+E E+ + +A
Sbjct: 114 DEESISISSVRGWPCSDYFIKGVKPQSVETEMTSNTA 148

[Close]

BLAST of HG10002447 vs. TAIR 10
Match: AT1G16840.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-24
Identity = 67/136 (49.26%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 7   SKSQALTLTLNLLRPHPRSLSP-IHSLFRRTFSSPSDNDLTDL-----SESPSSDPLLRN 66
           S S++L+L+         SL P  H +  R+ SS    DL ++     S+SP SDPL++ 
Sbjct: 4   SFSRSLSLSKGRFAAASSSLLPSSHLVSFRSQSSDRRGDLYEIDTSAASQSP-SDPLIQK 63

Query: 67  LEDAIQRILVRRSAPDWLPFVPGASYWVPLP-SNSHLPPIANVLHNLANPLSPEQSLSTT 126
           LEDA+ RI VRR+ PDWLPFVPGASYWVP P S S    IA ++  LANPL+ E+SLST 
Sbjct: 64  LEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPLTHEESLSTN 123

Query: 127 TVRGWPSSNYFIHGPH 136
           +  GWPSS+YF+ G +
Sbjct: 124 SSHGWPSSDYFLKGSY 138

The following BLAST results are available for this feature:

BLAST of HG10002447 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135962.1	3.0e-65	84.38	uncharacterized protein LOC101214133 [Cucumis sativus]	[more]
KAE8646378.1	3.0e-65	84.38	hypothetical protein Csa_015587 [Cucumis sativus]	[more]
XP_022980733.1	3.6e-63	83.23	uncharacterized protein LOC111480015 isoform X1 [Cucurbita maxima]	[more]
KAG7018211.1	3.6e-63	83.85	hypothetical protein SDJN02_20079, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022956127.1	3.6e-63	83.85	uncharacterized protein LOC111457911 isoform X2 [Cucurbita moschata]	[more]

BLAST of HG10002447 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10002447 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9L9	1.4e-65	84.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G419630 PE=4 SV=1	[more]
A0A6J1J031	1.8e-63	83.23	uncharacterized protein LOC111480015 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J062	1.8e-63	83.23	uncharacterized protein LOC111480015 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GVG9	1.8e-63	83.85	uncharacterized protein LOC111457911 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GVQ5	5.1e-63	83.75	uncharacterized protein LOC111457911 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of HG10002447 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16840.4	1.3e-26	47.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G16840.3	1.3e-26	47.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G16840.1	1.3e-26	47.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G78890.1	8.5e-26	57.73	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G16840.2	2.7e-24	49.26	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..159
None	No IPR available	PANTHER	PTHR33972	EXPRESSED PROTEIN	coord: 10..157
None	No IPR available	PANTHER	PTHR33972:SF16	REPETITIVE MATRIX PROTEIN 2, PUTATIVE ISOFORM 1-RELATED	coord: 10..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002447.1	HG10002447.1	mRNA