Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTGCATTCATTGGTGAAATTGGCCTCGGCGGTGAGCTTCGCATGGTAAGCACTCTATTTCAACGTTATTACACAAGTTTTGGCATAACTTACACGAGATCATCTTGTATTTAGTATACCATAAGGGCCTTTTTTCATATTTTAAAAAAAAATGAAATCTCAAAACTTCATTAACGTTCAGGTGGGTAGAATGGAGAAGAGGATCAATACTGTATCCAAATTGGGTTTCAAGAGATGTGTAGTACCCAAATCAGCTGAAAATTGTTTAGGGGTGGTAGAATTGGGCGAGATGAAGCTCATAGGCTGCAGAAATTTGAAAGATGTTATCAACAAAGTGTTTATGGCAAGAGATGAATTTGGAAGTCTACACTCTTTTGTTGGGTAA
mRNA sequence
ATGACATTGCATTCATTGGTGAAATTGGCCTCGGCGGTGGGTAGAATGGAGAAGAGGATCAATACTGTATCCAAATTGGGTTTCAAGAGATGTGTAGTACCCAAATCAGCTGAAAATTGTTTAGGGGTGGTAGAATTGGGCGAGATGAAGCTCATAGGCTGCAGAAATTTGAAAGATGTTATCAACAAAGTGTTTATGGCAAGAGATGAATTTGGAAGTCTACACTCTTTTGTTGGGTAA
Coding sequence (CDS)
ATGACATTGCATTCATTGGTGAAATTGGCCTCGGCGGTGGGTAGAATGGAGAAGAGGATCAATACTGTATCCAAATTGGGTTTCAAGAGATGTGTAGTACCCAAATCAGCTGAAAATTGTTTAGGGGTGGTAGAATTGGGCGAGATGAAGCTCATAGGCTGCAGAAATTTGAAAGATGTTATCAACAAAGTGTTTATGGCAAGAGATGAATTTGGAAGTCTACACTCTTTTGTTGGGTAA
Protein sequence
MTLHSLVKLASAVGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFVG
Homology
BLAST of HG10002302 vs. NCBI nr
Match:
XP_022153628.1 (uncharacterized protein LOC111021088 [Momordica charantia])
HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
V RMEKRINTV KLGFKRCVVPKSAENCLGVVELG+MKLIGCRNLKDV+N VFMARDE
Sbjct: 574 VSRMEKRINTVVKLGFKRCVVPKSAENCLGVVELGDMKLIGCRNLKDVMNNVFMARDEAM 633
Query: 73 SLHSFV 79
HSFV
Sbjct: 634 HRHSFV 639
BLAST of HG10002302 vs. NCBI nr
Match:
XP_022980476.1 (uncharacterized protein LOC111479856 [Cucurbita maxima])
HSP 1 Score: 114.8 bits (286), Expect = 3.5e-22
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
V RMEKRINTVSKLGFKRCVVPKSAE CLGVVELGE +LIGCRNLKDVIN VFMARD
Sbjct: 591 VSRMEKRINTVSKLGFKRCVVPKSAEKCLGVVELGETRLIGCRNLKDVINDVFMARDGAR 650
Query: 73 SLHSFVG 80
S+ SFVG
Sbjct: 651 SVQSFVG 657
BLAST of HG10002302 vs. NCBI nr
Match:
XP_023527681.1 (uncharacterized protein LOC111790828 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 111.3 bits (277), Expect = 3.8e-21
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
V RMEKRINTV+KLGFKRCVVPKSAE CLGVVELGE +LIGC NLKDVIN VFMARD
Sbjct: 582 VSRMEKRINTVAKLGFKRCVVPKSAEKCLGVVELGETRLIGCSNLKDVINDVFMARDGAR 641
Query: 73 SLHSFVG 80
S+ SFVG
Sbjct: 642 SVQSFVG 648
BLAST of HG10002302 vs. NCBI nr
Match:
KAG7018307.1 (radA, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 109.0 bits (271), Expect = 1.9e-20
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
V RMEKRINTV+KLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD
Sbjct: 572 VSRMEKRINTVAKLGFKRCVVPKSAEKCLGVVESGEMRLIGCRNLKDVINDVFMARDGAR 631
Query: 73 SLH-SFVG 80
S+ SFVG
Sbjct: 632 SVRSSFVG 639
BLAST of HG10002302 vs. NCBI nr
Match:
XP_022956185.1 (uncharacterized protein LOC111457955 [Cucurbita moschata])
HSP 1 Score: 109.0 bits (271), Expect = 1.9e-20
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
V RMEKRINTV+KLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD
Sbjct: 590 VSRMEKRINTVAKLGFKRCVVPKSAEKCLGVVESGEMRLIGCRNLKDVINDVFMARDGAR 649
Query: 73 SLH-SFVG 80
S+ SFVG
Sbjct: 650 SVQSSFVG 657
BLAST of HG10002302 vs. ExPASy TrEMBL
Match:
A0A6J1DHZ5 (uncharacterized protein LOC111021088 OS=Momordica charantia OX=3673 GN=LOC111021088 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 5.7e-23
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
V RMEKRINTV KLGFKRCVVPKSAENCLGVVELG+MKLIGCRNLKDV+N VFMARDE
Sbjct: 574 VSRMEKRINTVVKLGFKRCVVPKSAENCLGVVELGDMKLIGCRNLKDVMNNVFMARDEAM 633
Query: 73 SLHSFV 79
HSFV
Sbjct: 634 HRHSFV 639
BLAST of HG10002302 vs. ExPASy TrEMBL
Match:
A0A6J1ITP4 (uncharacterized protein LOC111479856 OS=Cucurbita maxima OX=3661 GN=LOC111479856 PE=4 SV=1)
HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
V RMEKRINTVSKLGFKRCVVPKSAE CLGVVELGE +LIGCRNLKDVIN VFMARD
Sbjct: 591 VSRMEKRINTVSKLGFKRCVVPKSAEKCLGVVELGETRLIGCRNLKDVINDVFMARDGAR 650
Query: 73 SLHSFVG 80
S+ SFVG
Sbjct: 651 SVQSFVG 657
BLAST of HG10002302 vs. ExPASy TrEMBL
Match:
A0A6J1GX44 (uncharacterized protein LOC111457955 OS=Cucurbita moschata OX=3662 GN=LOC111457955 PE=4 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 9.2e-21
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
V RMEKRINTV+KLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD
Sbjct: 590 VSRMEKRINTVAKLGFKRCVVPKSAEKCLGVVESGEMRLIGCRNLKDVINDVFMARDGAR 649
Query: 73 SLH-SFVG 80
S+ SFVG
Sbjct: 650 SVQSSFVG 657
BLAST of HG10002302 vs. ExPASy TrEMBL
Match:
A0A5D3C9C8 (DNA repair protein RadA isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00200 PE=4 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDE 71
VGRMEKRINTV+KLGFKRCVVPKSAENCLGVV LG+MKLIGC NLKDVIN VFM RDE
Sbjct: 570 VGRMEKRINTVAKLGFKRCVVPKSAENCLGVVGLGKMKLIGCTNLKDVINNVFMVRDE 627
BLAST of HG10002302 vs. ExPASy TrEMBL
Match:
A0A1S3BHQ7 (DNA repair protein RadA isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489983 PE=4 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDE 71
VGRMEKRINTV+KLGFKRCVVPKSAENCLGVV LG+MKLIGC NLKDVIN VFM RDE
Sbjct: 332 VGRMEKRINTVAKLGFKRCVVPKSAENCLGVVGLGKMKLIGCTNLKDVINNVFMVRDE 389
BLAST of HG10002302 vs. TAIR 10
Match:
AT5G50340.1 (ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases )
HSP 1 Score: 71.2 bits (173), Expect = 4.1e-13
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 0
Query: 13 VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVF 66
V RMEKR++TV+KLGF +CVVPKS E L + L E+++IGC+NLK++IN VF
Sbjct: 533 VPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIEIIGCKNLKELINAVF 585
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022153628.1 | 1.2e-22 | 86.36 | uncharacterized protein LOC111021088 [Momordica charantia] | [more] |
XP_022980476.1 | 3.5e-22 | 85.07 | uncharacterized protein LOC111479856 [Cucurbita maxima] | [more] |
XP_023527681.1 | 3.8e-21 | 82.09 | uncharacterized protein LOC111790828 [Cucurbita pepo subsp. pepo] | [more] |
KAG7018307.1 | 1.9e-20 | 82.35 | radA, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_022956185.1 | 1.9e-20 | 82.35 | uncharacterized protein LOC111457955 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DHZ5 | 5.7e-23 | 86.36 | uncharacterized protein LOC111021088 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
A0A6J1ITP4 | 1.7e-22 | 85.07 | uncharacterized protein LOC111479856 OS=Cucurbita maxima OX=3661 GN=LOC111479856... | [more] |
A0A6J1GX44 | 9.2e-21 | 82.35 | uncharacterized protein LOC111457955 OS=Cucurbita moschata OX=3662 GN=LOC1114579... | [more] |
A0A5D3C9C8 | 1.6e-20 | 89.66 | DNA repair protein RadA isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
A0A1S3BHQ7 | 1.6e-20 | 89.66 | DNA repair protein RadA isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489983 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |
AT5G50340.1 | 4.1e-13 | 60.38 | ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helic... | [more] |