HG10002302 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002302
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA repair protein RadA
Location	Chr11: 5377734 .. 5378123 (-)
RNA-Seq Expression	HG10002302
Synteny	HG10002302

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTGCATTCATTGGTGAAATTGGCCTCGGCGGTGAGCTTCGCATGGTAAGCACTCTATTTCAACGTTATTACACAAGTTTTGGCATAACTTACACGAGATCATCTTGTATTTAGTATACCATAAGGGCCTTTTTTCATATTTTAAAAAAAAATGAAATCTCAAAACTTCATTAACGTTCAGGTGGGTAGAATGGAGAAGAGGATCAATACTGTATCCAAATTGGGTTTCAAGAGATGTGTAGTACCCAAATCAGCTGAAAATTGTTTAGGGGTGGTAGAATTGGGCGAGATGAAGCTCATAGGCTGCAGAAATTTGAAAGATGTTATCAACAAAGTGTTTATGGCAAGAGATGAATTTGGAAGTCTACACTCTTTTGTTGGGTAA

mRNA sequence

ATGACATTGCATTCATTGGTGAAATTGGCCTCGGCGGTGGGTAGAATGGAGAAGAGGATCAATACTGTATCCAAATTGGGTTTCAAGAGATGTGTAGTACCCAAATCAGCTGAAAATTGTTTAGGGGTGGTAGAATTGGGCGAGATGAAGCTCATAGGCTGCAGAAATTTGAAAGATGTTATCAACAAAGTGTTTATGGCAAGAGATGAATTTGGAAGTCTACACTCTTTTGTTGGGTAA

Coding sequence (CDS)

ATGACATTGCATTCATTGGTGAAATTGGCCTCGGCGGTGGGTAGAATGGAGAAGAGGATCAATACTGTATCCAAATTGGGTTTCAAGAGATGTGTAGTACCCAAATCAGCTGAAAATTGTTTAGGGGTGGTAGAATTGGGCGAGATGAAGCTCATAGGCTGCAGAAATTTGAAAGATGTTATCAACAAAGTGTTTATGGCAAGAGATGAATTTGGAAGTCTACACTCTTTTGTTGGGTAA

Protein sequence

MTLHSLVKLASAVGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFVG

Homology

[Close]

BLAST of HG10002302 vs. NCBI nr
Match: XP_022153628.1 (uncharacterized protein LOC111021088 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
           V RMEKRINTV KLGFKRCVVPKSAENCLGVVELG+MKLIGCRNLKDV+N VFMARDE  
Sbjct: 574 VSRMEKRINTVVKLGFKRCVVPKSAENCLGVVELGDMKLIGCRNLKDVMNNVFMARDEAM 633

Query: 73  SLHSFV 79
             HSFV
Sbjct: 634 HRHSFV 639

[Close]

BLAST of HG10002302 vs. NCBI nr
Match: XP_022980476.1 (uncharacterized protein LOC111479856 [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 3.5e-22
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
           V RMEKRINTVSKLGFKRCVVPKSAE CLGVVELGE +LIGCRNLKDVIN VFMARD   
Sbjct: 591 VSRMEKRINTVSKLGFKRCVVPKSAEKCLGVVELGETRLIGCRNLKDVINDVFMARDGAR 650

Query: 73  SLHSFVG 80
           S+ SFVG
Sbjct: 651 SVQSFVG 657

[Close]

BLAST of HG10002302 vs. NCBI nr
Match: XP_023527681.1 (uncharacterized protein LOC111790828 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 3.8e-21
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
           V RMEKRINTV+KLGFKRCVVPKSAE CLGVVELGE +LIGC NLKDVIN VFMARD   
Sbjct: 582 VSRMEKRINTVAKLGFKRCVVPKSAEKCLGVVELGETRLIGCSNLKDVINDVFMARDGAR 641

Query: 73  SLHSFVG 80
           S+ SFVG
Sbjct: 642 SVQSFVG 648

[Close]

BLAST of HG10002302 vs. NCBI nr
Match: KAG7018307.1 (radA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 1.9e-20
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
           V RMEKRINTV+KLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD   
Sbjct: 572 VSRMEKRINTVAKLGFKRCVVPKSAEKCLGVVESGEMRLIGCRNLKDVINDVFMARDGAR 631

Query: 73  SLH-SFVG 80
           S+  SFVG
Sbjct: 632 SVRSSFVG 639

[Close]

BLAST of HG10002302 vs. NCBI nr
Match: XP_022956185.1 (uncharacterized protein LOC111457955 [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 1.9e-20
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
           V RMEKRINTV+KLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD   
Sbjct: 590 VSRMEKRINTVAKLGFKRCVVPKSAEKCLGVVESGEMRLIGCRNLKDVINDVFMARDGAR 649

Query: 73  SLH-SFVG 80
           S+  SFVG
Sbjct: 650 SVQSSFVG 657

[Close]

BLAST of HG10002302 vs. ExPASy TrEMBL
Match: A0A6J1DHZ5 (uncharacterized protein LOC111021088 OS=Momordica charantia OX=3673 GN=LOC111021088 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.7e-23
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
           V RMEKRINTV KLGFKRCVVPKSAENCLGVVELG+MKLIGCRNLKDV+N VFMARDE  
Sbjct: 574 VSRMEKRINTVVKLGFKRCVVPKSAENCLGVVELGDMKLIGCRNLKDVMNNVFMARDEAM 633

Query: 73  SLHSFV 79
             HSFV
Sbjct: 634 HRHSFV 639

[Close]

BLAST of HG10002302 vs. ExPASy TrEMBL
Match: A0A6J1ITP4 (uncharacterized protein LOC111479856 OS=Cucurbita maxima OX=3661 GN=LOC111479856 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
           V RMEKRINTVSKLGFKRCVVPKSAE CLGVVELGE +LIGCRNLKDVIN VFMARD   
Sbjct: 591 VSRMEKRINTVSKLGFKRCVVPKSAEKCLGVVELGETRLIGCRNLKDVINDVFMARDGAR 650

Query: 73  SLHSFVG 80
           S+ SFVG
Sbjct: 651 SVQSFVG 657

[Close]

BLAST of HG10002302 vs. ExPASy TrEMBL
Match: A0A6J1GX44 (uncharacterized protein LOC111457955 OS=Cucurbita moschata OX=3662 GN=LOC111457955 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.2e-21
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFG 72
           V RMEKRINTV+KLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD   
Sbjct: 590 VSRMEKRINTVAKLGFKRCVVPKSAEKCLGVVESGEMRLIGCRNLKDVINDVFMARDGAR 649

Query: 73  SLH-SFVG 80
           S+  SFVG
Sbjct: 650 SVQSSFVG 657

[Close]

BLAST of HG10002302 vs. ExPASy TrEMBL
Match: A0A5D3C9C8 (DNA repair protein RadA isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00200 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDE 71
           VGRMEKRINTV+KLGFKRCVVPKSAENCLGVV LG+MKLIGC NLKDVIN VFM RDE
Sbjct: 570 VGRMEKRINTVAKLGFKRCVVPKSAENCLGVVGLGKMKLIGCTNLKDVINNVFMVRDE 627

[Close]

BLAST of HG10002302 vs. ExPASy TrEMBL
Match: A0A1S3BHQ7 (DNA repair protein RadA isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489983 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDE 71
           VGRMEKRINTV+KLGFKRCVVPKSAENCLGVV LG+MKLIGC NLKDVIN VFM RDE
Sbjct: 332 VGRMEKRINTVAKLGFKRCVVPKSAENCLGVVGLGKMKLIGCTNLKDVINNVFMVRDE 389

[Close]

BLAST of HG10002302 vs. TAIR 10
Match: AT5G50340.1 (ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases )

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-13
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 13  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVF 66
           V RMEKR++TV+KLGF +CVVPKS E  L  + L E+++IGC+NLK++IN VF
Sbjct: 533 VPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIEIIGCKNLKELINAVF 585

The following BLAST results are available for this feature:

BLAST of HG10002302 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153628.1	1.2e-22	86.36	uncharacterized protein LOC111021088 [Momordica charantia]	[more]
XP_022980476.1	3.5e-22	85.07	uncharacterized protein LOC111479856 [Cucurbita maxima]	[more]
XP_023527681.1	3.8e-21	82.09	uncharacterized protein LOC111790828 [Cucurbita pepo subsp. pepo]	[more]
KAG7018307.1	1.9e-20	82.35	radA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022956185.1	1.9e-20	82.35	uncharacterized protein LOC111457955 [Cucurbita moschata]	[more]

BLAST of HG10002302 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10002302 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHZ5	5.7e-23	86.36	uncharacterized protein LOC111021088 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1ITP4	1.7e-22	85.07	uncharacterized protein LOC111479856 OS=Cucurbita maxima OX=3661 GN=LOC111479856...	[more]
A0A6J1GX44	9.2e-21	82.35	uncharacterized protein LOC111457955 OS=Cucurbita moschata OX=3662 GN=LOC1114579...	[more]
A0A5D3C9C8	1.6e-20	89.66	DNA repair protein RadA isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BHQ7	1.6e-20	89.66	DNA repair protein RadA isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489983 PE=4 ...	[more]

BLAST of HG10002302 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50340.1	4.1e-13	60.38	ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32472:SF19	DNA REPAIR-LIKE PROTEINRADA	coord: 12..66
None	No IPR available	PANTHER	PTHR32472	DNA REPAIR PROTEIN RADA	coord: 12..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002302.1	HG10002302.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000725	recombinational repair
cellular_component	GO:0009536	plastid
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding