Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATACTGAAGAATGGGAAACAAATACTCATCAAATGGATAATGACATTCCGCCACATTTATTAGCCGACGAAGACGAAGACGAAGAAAATATAATAACAAGTCCAGCCAGTAATTATACGTTTCCGGTCACCGGAAAGATGACGGACTGGTGGTGTTTTCTGCTTTCCGGCGATCGATGTGCCATTTTTAGAAAAATCATGGAGAAGAGAAAACTTCCTATTAGAGTGTATTTCACCCTTTGTAATTAG
mRNA sequence
ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATACTGAAGAATGGGAAACAAATACTCATCAAATGGATAATGACATTCCGCCACATTTATTAGCCGACGAAGACGAAGACGAAGAAAATATAATAACAAGTCCAGCCAGTAATTATACGTTTCCGGTCACCGGAAAGATGACGGACTGGTGGTGTTTTCTGCTTTCCGGCGATCGATGTGCCATTTTTAGAAAAATCATGGAGAAGAGAAAACTTCCTATTAGAGTGTATTTCACCCTTTGTAATTAG
Coding sequence (CDS)
ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATACTGAAGAATGGGAAACAAATACTCATCAAATGGATAATGACATTCCGCCACATTTATTAGCCGACGAAGACGAAGACGAAGAAAATATAATAACAAGTCCAGCCAGTAATTATACGTTTCCGGTCACCGGAAAGATGACGGACTGGTGGTGTTTTCTGCTTTCCGGCGATCGATGTGCCATTTTTAGAAAAATCATGGAGAAGAGAAAACTTCCTATTAGAGTGTATTTCACCCTTTGTAATTAG
Protein sequence
MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYTFPVTGKMTDWWCFLLSGDRCAIFRKIMEKRKLPIRVYFTLCN
Homology
BLAST of HG10001908 vs. NCBI nr
Match:
KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 94.7 bits (234), Expect = 4.8e-16
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0
Query: 1 MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYT 60
M+VSLEALAMAGI SNEWAMD EEWE N +++ND+PPHLLADED+D++N +TS SNY+
Sbjct: 1 MSVSLEALAMAGITSNEWAMDAEEWERN--EIENDVPPHLLADEDDDDDN-VTSTVSNYS 60
Query: 61 FPVTG 66
FPV G
Sbjct: 61 FPVAG 62
BLAST of HG10001908 vs. NCBI nr
Match:
KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 94.7 bits (234), Expect = 4.8e-16
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0
Query: 1 MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYT 60
M+VSLEALAMAGI SNEWAMD EEWE N +++ND+PPHLLADED+D++N +TS SNY+
Sbjct: 1 MSVSLEALAMAGITSNEWAMDAEEWERN--EIENDVPPHLLADEDDDDDN-VTSTVSNYS 60
Query: 61 FPVTG 66
FPV G
Sbjct: 61 FPVAG 62
BLAST of HG10001908 vs. NCBI nr
Match:
KAE8649147.1 (hypothetical protein Csa_014525, partial [Cucumis sativus])
HSP 1 Score: 85.5 bits (210), Expect = 2.9e-13
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 0
Query: 1 MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDED 48
M VSLEALAMAGIDSNEWAMD EEW+TNTHQM+ND IPPHLLADEDE+
Sbjct: 1 MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 49
BLAST of HG10001908 vs. NCBI nr
Match:
KAE8637184.1 (hypothetical protein CSA_023573, partial [Cucumis sativus] >KAE8637242.1 hypothetical protein CSA_023968, partial [Cucumis sativus])
HSP 1 Score: 84.3 bits (207), Expect = 6.5e-13
Identity = 51/88 (57.95%), Postives = 57/88 (64.77%), Query Frame = 0
Query: 7 ALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDEDEENIITSPASNYTFPVT 66
ALAMAGIDSNEWAMD EEW+TNTHQM+ND IPPHLLA DEDEENI ++
Sbjct: 1 ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLA--DEDEENIAAKELC-----IS 60
Query: 67 GKMTDWWCFLLSGDR--CAIFRKIMEKR 91
G D + R AI RK+MEKR
Sbjct: 61 GHRKDDGLVVFCAFRRSYAILRKMMEKR 81
BLAST of HG10001908 vs. NCBI nr
Match:
TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])
HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query: 1 MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNY 60
M+VSLEALAMAGIDSNEW MD +EWE N + +PPHLLADE++DE+ +TS SNY
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV---VPPHLLADEEDDEDGEYVTSTISNY 60
Query: 61 TFPVTGKMTDW 71
F V G W
Sbjct: 61 CFRVDGSFGGW 68
BLAST of HG10001908 vs. ExPASy TrEMBL
Match:
A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)
HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 56/94 (59.57%), Postives = 62/94 (65.96%), Query Frame = 0
Query: 1 MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDEDEENIITSPASN 60
M VSLEALAMAGIDSNEWAMD EEW+TNTHQM+ND IPPHLLA DEDEENI
Sbjct: 1 MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLA--DEDEENIAAKELC- 60
Query: 61 YTFPVTGKMTDWWCFLLSGDR--CAIFRKIMEKR 91
++G D + R AI RK+MEKR
Sbjct: 61 ----ISGHRKDDGLVVFCAFRRSYAILRKMMEKR 87
BLAST of HG10001908 vs. ExPASy TrEMBL
Match:
A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 4.4e-15
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0
Query: 1 MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDE---ENIITSPAS 60
M+VSLEALAMAGIDSNEWAMD EEWE N + +PPHLLADE++DE E++ TS S
Sbjct: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV---VPPHLLADEEDDEDGDEHVTTSTIS 60
Query: 61 NYTFPVTGKMTDW 71
NY FPV G W
Sbjct: 61 NYCFPVDGSFEGW 70
BLAST of HG10001908 vs. ExPASy TrEMBL
Match:
A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 7.0e-13
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query: 1 MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNY 60
M+VSLEALAMAGIDSNEW MD +EWE N + +PPHLLADE++DE+ +TS SNY
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV---VPPHLLADEEDDEDGEYVTSTISNY 60
Query: 61 TFPVTGKMTDW 71
F V G W
Sbjct: 61 CFRVDGSFGGW 68
BLAST of HG10001908 vs. ExPASy TrEMBL
Match:
A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 7.0e-13
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query: 1 MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNY 60
M+VSLEALAMAGIDSNEW MD +EWE N + +PPHLLADE++DE+ +TS SNY
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV---VPPHLLADEEDDEDGEYVTSTISNY 60
Query: 61 TFPVTGKMTDW 71
F V G W
Sbjct: 61 CFRVDGSFGGW 68
BLAST of HG10001908 vs. ExPASy TrEMBL
Match:
A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 3.5e-12
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0
Query: 1 MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYT 60
M+VSLEALAMAGIDSNEWAMD EEWE N +M+ DIPPHLLADED++E+ + T
Sbjct: 1 MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEKDIPPHLLADEDDEEDEMSTK------ 56
Query: 61 FPVT 65
FP T
Sbjct: 61 FPAT 56
BLAST of HG10001908 vs. TAIR 10
Match:
AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 45.4 bits (106), Expect = 3.1e-05
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0
Query: 5 LEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE 50
+EALAMAG+D EW + EEWE ++ +P HLLAD+ ++EE
Sbjct: 1 MEALAMAGVDYQEWGLSIEEWEL----QESVVPLHLLADDFKEEE 41
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7015383.1 | 4.8e-16 | 70.77 | hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6577295.1 | 4.8e-16 | 70.77 | hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAE8649147.1 | 2.9e-13 | 85.71 | hypothetical protein Csa_014525, partial [Cucumis sativus] | [more] |
KAE8637184.1 | 6.5e-13 | 57.95 | hypothetical protein CSA_023573, partial [Cucumis sativus] >KAE8637242.1 hypothe... | [more] |
TYK16880.1 | 1.4e-12 | 59.15 | Tetratricopeptide-like helical [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KU90 | 1.5e-15 | 59.57 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1 | [more] |
A0A0A0KWE7 | 4.4e-15 | 63.01 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1 | [more] |
A0A5D3CZU0 | 7.0e-13 | 59.15 | Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A5A7TS68 | 7.0e-13 | 59.15 | Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
A0A6J1FX98 | 3.5e-12 | 65.63 | uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... | [more] |
Match Name | E-value | Identity | Description | |
AT2G22320.1 | 3.1e-05 | 48.89 | unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... | [more] |