HG10001535 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001535
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S18
Location	Chr09: 17934060 .. 17935532 (-)
RNA-Seq Expression	HG10001535
Synteny	HG10001535

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCCTTCAAGAAGCATCCTAGGCGAGTTTTATGGCCAACTGTGTCTGGATGGTTACATTCAGATTGGATGATCTGTGATGGATATGAACTTCACTATATTATCATTTTGCACCTTCTGTAGATGATTTTTTGTTATATTACCATTATTCTAAGTAATTTAGAATGTATACAGGATCTGGATCTAACAAAGCCAGGTGTACGTAAGCCCCCCAAATGGGAAGAGTTTCAGGTGACAACGGAGGAGGCCTTACGAAAAGCTGATTTCAGGGTGAGCATTCCTGAATTTCATTTACCTTGCCATTATGGATAGCTAGGACTAGGACTAAAACATGGTCAGAATTAGTGGTATGGTAACATCCGTCTTGATCCGTTGCAATCTTCTCTCATAGCTACCCCTAGTTGATTATGGAATATCTTATGGTATGAACTTCTCATCTCTTAAGTATCATAGCTTATGAACTGAAAAAAACACAAGGGTCGTCATAGGTTTAAAAGGAAATCCTTGATTTTGAATCTAGTCAATTTGAGTAGTTTAGAAATTTTGAAGTACAAGAAGCGACAAGTTGGAATAGGATTGTTTACTGCTGGTTTTCTGCACAGTTCCATTTAAGAAGTCTGGCAGGGAGTATACATCTGTGTTTTTATTAAAACTGTCCAATCCTGGAACAGGAGGAGCCATCCCGTTTGAAGTTTGGTCTGTCATGATAGACATAGTGTAGTCATCAGTGTCCATGGACCATCAAATTTTTTATATAAATTGCAGTTAATCAATTTACGAGTTTCTGATCTGGACAGTGCGTGGTTGTATTTTTCAATCAAGAAAGTAAGATCATGCAACGGCCTCTAAGAGTTTCTAACAGTTGCTCGTTTGCAACATTATCTGGTCATGGAATTATTACTAATCATTTTCAGTGCTACCAAAAAATAGTCTGGCCATAAGTTTGTCTTTGAGGCCATTGAAATTTAGTCTTGTCCAAAGCTCTATTTAGGAAGTTTATTTACGATATAGATTTCCTGTCCAAGCAAATAAAATACGGGATGGGAGTTAAATCGTATTTTATGTCTCTTACCAGCTTTAGGCATATCTAACGAGTGAGTAGTTGTTTGCAGAATGTTAGGTTTCTGGCGAACTTTATAACTGAGGCCGGGATCATGAAGAAGAGGAGTATGGTAAACTTTTTGAACAAAAATCAGGTTTTGAACGAGTTGAGCCGTCATCCTTCATCTTATTTTATCACTTCATCCATTTGCAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTCGCACGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACGAAATCATTTATTTTTGGCAAAACCATGGAGAATCTTGATAGCGACTATGAGTACGAAGTTTTTGACAATAATGCTGATGCAGATGGAGGACGCCCACTCAGATCCCAAAGACCACGCTTTTAG

mRNA sequence

ATGTTTCCTTCAAGAAGCATCCTAGGCGAGTTTTATGGCCAACTGTGTCTGGATGAATGTATACAGGATCTGGATCTAACAAAGCCAGGTGTACGTAAGCCCCCCAAATGGGAAGAGTTTCAGGTGACAACGGAGGAGGCCTTACGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCGAACTTTATAACTGAGGCCGGGATCATGAAGAAGAGGAGTATGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTCGCACGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACGAAATCATTTATTTTTGGCAAAACCATGGAGAATCTTGATAGCGACTATGAGTACGAAGTTTTTGACAATAATGCTGATGCAGATGGAGGACGCCCACTCAGATCCCAAAGACCACGCTTTTAG

Coding sequence (CDS)

ATGTTTCCTTCAAGAAGCATCCTAGGCGAGTTTTATGGCCAACTGTGTCTGGATGAATGTATACAGGATCTGGATCTAACAAAGCCAGGTGTACGTAAGCCCCCCAAATGGGAAGAGTTTCAGGTGACAACGGAGGAGGCCTTACGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCGAACTTTATAACTGAGGCCGGGATCATGAAGAAGAGGAGTATGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTCGCACGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACGAAATCATTTATTTTTGGCAAAACCATGGAGAATCTTGATAGCGACTATGAGTACGAAGTTTTTGACAATAATGCTGATGCAGATGGAGGACGCCCACTCAGATCCCAAAGACCACGCTTTTAG

Protein sequence

MFPSRSILGEFYGQLCLDECIQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRSQRPRF

Homology

[Close]

BLAST of HG10001535 vs. NCBI nr
Match: XP_023532312.1 (uncharacterized protein LOC111794503 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-49
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 21  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAK 80
           I+DLDLTKPGVRKPPK  EFQVTTEE LRKADFRNVRFLANFIT+AGI+ KRS TGISAK
Sbjct: 40  IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAK 99

Query: 81  AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRP 138
           AQRKVAREIKTARAFGLMPFTTMGTKSF+FGKTME LD DYEYEVF+NN DAD GRP
Sbjct: 100 AQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRP 156

[Close]

BLAST of HG10001535 vs. NCBI nr
Match: XP_022947026.1 (uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata])

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-49
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 21  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAK 80
           I+DLDLTKPGVRKPPK  EFQVTTEE LRKADFRNVRFLANFIT+AGI+ KRS TGISAK
Sbjct: 151 IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAK 210

Query: 81  AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRP 138
           AQRKVAREIKTARAFGLMPFTTMGTKSF+FGKTME LD DYEYEVF+NN DAD GRP
Sbjct: 211 AQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRP 267

[Close]

BLAST of HG10001535 vs. NCBI nr
Match: XP_004143160.1 (uncharacterized protein LOC101213524 [Cucumis sativus] >KAE8646950.1 hypothetical protein Csa_020654 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 4.7e-49
Identity = 106/121 (87.60%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 21  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAK 80
           I+DLDLTKPG RKPPK  EFQVTTEEALRKADFRNVRFLANFITEAGI+ KRS T ISAK
Sbjct: 153 IKDLDLTKPGFRKPPKRVEFQVTTEEALRKADFRNVRFLANFITEAGIINKRSNTRISAK 212

Query: 81  AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDN-NADADGGRPLR 140
           AQRKVAREIKTARAFGLMPFTTMGTKSF FGK+MENLD+D+EYEVFDN N DADGG PLR
Sbjct: 213 AQRKVAREIKTARAFGLMPFTTMGTKSFNFGKSMENLDTDFEYEVFDNDNTDADGGHPLR 272

[Close]

BLAST of HG10001535 vs. NCBI nr
Match: XP_022148322.1 (uncharacterized protein LOC111017003 [Momordica charantia])

HSP 1 Score: 204.1 bits (518), Expect = 7.9e-49
Identity = 102/120 (85.00%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 21  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAK 80
           I+DLDL KPGVRKPPK  EFQVTTEE L+KADFRNVRFLANFIT+AGI+ KRS TGISAK
Sbjct: 152 IKDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSKTGISAK 211

Query: 81  AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRS 140
           AQRKVAREIKTARAFGLMPFTTMGTK+F+FGKTME+LD DYEYEVFDN ADAD G PL S
Sbjct: 212 AQRKVAREIKTARAFGLMPFTTMGTKTFVFGKTMEDLDKDYEYEVFDNTADADRGHPLGS 271

[Close]

BLAST of HG10001535 vs. NCBI nr
Match: XP_008464035.1 (PREDICTED: uncharacterized protein LOC103502018 [Cucumis melo] >KAA0061825.1 putative Ribosomal protein S18 [Cucumis melo var. makuwa] >TYK15431.1 putative Ribosomal protein S18 [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-48
Identity = 105/121 (86.78%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 21  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAK 80
           ++DLDLT+PGVRKPPK   FQVTTEEALRKADFRNVRFLANFITEAGI+ KRS T ISAK
Sbjct: 153 VKDLDLTRPGVRKPPKRVGFQVTTEEALRKADFRNVRFLANFITEAGIINKRSNTRISAK 212

Query: 81  AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDN-NADADGGRPLR 140
           AQRKVAREIKTARAFGLMPFTTMGTKSFIFGK+MENLD+D+EYEVFDN N DADGGR LR
Sbjct: 213 AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKSMENLDTDFEYEVFDNDNTDADGGRMLR 272

[Close]

BLAST of HG10001535 vs. ExPASy Swiss-Prot
Match: O66476 (30S ribosomal protein S18 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rpsR PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 46  EALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPF 101
           E  R+ D++N   L NF+TE G +K R  TG+ AK QR++A +IK AR  GL+P+
Sbjct: 15  EQKREPDYKNYEELRNFLTERGRIKDRKQTGLCAKHQRRLAVQIKRARQLGLLPY 69

[Close]

BLAST of HG10001535 vs. ExPASy Swiss-Prot
Match: P62659 (30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=rpsR PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 28  KPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAR 87
           K   R+P +  + + T  E     D+RNV  L  F++E G +  R  TG+SAK QR +A+
Sbjct: 10  KEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAK 69

Query: 88  EIKTARAFGLMPFT 102
            IK AR  GL+PFT
Sbjct: 70  TIKRARILGLLPFT 82

[Close]

BLAST of HG10001535 vs. ExPASy Swiss-Prot
Match: Q5SLQ0 (30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=rpsR PE=1 SV=3)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 28  KPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAR 87
           K   R+P +  + + T  E     D+RNV  L  F++E G +  R  TG+SAK QR +A+
Sbjct: 10  KEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAK 69

Query: 88  EIKTARAFGLMPFT 102
            IK AR  GL+PFT
Sbjct: 70  TIKRARILGLLPFT 82

[Close]

BLAST of HG10001535 vs. ExPASy Swiss-Prot
Match: A5F3K5 (30S ribosomal protein S18 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=rpsR PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-06
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 44  TEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFT 102
           T E +++ D+++V  L N+ITEAG +    +TG SAK QR++AR IK AR   L+P+T
Sbjct: 14  TAEGVQEIDYKDVATLKNYITEAGKIVPSRITGTSAKYQRQLARAIKRARYLALLPYT 71

[Close]

BLAST of HG10001535 vs. ExPASy Swiss-Prot
Match: Q9KUZ0 (30S ribosomal protein S18 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=rpsR PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-06
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 44  TEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFT 102
           T E +++ D+++V  L N+ITEAG +    +TG SAK QR++AR IK AR   L+P+T
Sbjct: 14  TAEGVQEIDYKDVATLKNYITEAGKIVPSRITGTSAKYQRQLARAIKRARYLALLPYT 71

[Close]

BLAST of HG10001535 vs. ExPASy TrEMBL
Match: A0A6J1G586 (uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451027 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.0e-49
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 21  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAK 80
           I+DLDLTKPGVRKPPK  EFQVTTEE LRKADFRNVRFLANFIT+AGI+ KRS TGISAK
Sbjct: 151 IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAK 210

Query: 81  AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRP 138
           AQRKVAREIKTARAFGLMPFTTMGTKSF+FGKTME LD DYEYEVF+NN DAD GRP
Sbjct: 211 AQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRP 267

[Close]

BLAST of HG10001535 vs. ExPASy TrEMBL
Match: A0A6J1D4R9 (uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017003 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.8e-49
Identity = 102/120 (85.00%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 21  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAK 80
           I+DLDL KPGVRKPPK  EFQVTTEE L+KADFRNVRFLANFIT+AGI+ KRS TGISAK
Sbjct: 152 IKDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSKTGISAK 211

Query: 81  AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRS 140
           AQRKVAREIKTARAFGLMPFTTMGTK+F+FGKTME+LD DYEYEVFDN ADAD G PL S
Sbjct: 212 AQRKVAREIKTARAFGLMPFTTMGTKTFVFGKTMEDLDKDYEYEVFDNTADADRGHPLGS 271

[Close]

BLAST of HG10001535 vs. ExPASy TrEMBL
Match: A0A5A7V7I3 (Putative Ribosomal protein S18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00800 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 5.0e-49
Identity = 105/121 (86.78%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 21  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAK 80
           ++DLDLT+PGVRKPPK   FQVTTEEALRKADFRNVRFLANFITEAGI+ KRS T ISAK
Sbjct: 153 VKDLDLTRPGVRKPPKRVGFQVTTEEALRKADFRNVRFLANFITEAGIINKRSNTRISAK 212

Query: 81  AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDN-NADADGGRPLR 140
           AQRKVAREIKTARAFGLMPFTTMGTKSFIFGK+MENLD+D+EYEVFDN N DADGGR LR
Sbjct: 213 AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKSMENLDTDFEYEVFDNDNTDADGGRMLR 272

[Close]

BLAST of HG10001535 vs. ExPASy TrEMBL
Match: A0A1S3CM21 (uncharacterized protein LOC103502018 OS=Cucumis melo OX=3656 GN=LOC103502018 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 5.0e-49
Identity = 105/121 (86.78%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 21  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAK 80
           ++DLDLT+PGVRKPPK   FQVTTEEALRKADFRNVRFLANFITEAGI+ KRS T ISAK
Sbjct: 153 VKDLDLTRPGVRKPPKRVGFQVTTEEALRKADFRNVRFLANFITEAGIINKRSNTRISAK 212

Query: 81  AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDN-NADADGGRPLR 140
           AQRKVAREIKTARAFGLMPFTTMGTKSFIFGK+MENLD+D+EYEVFDN N DADGGR LR
Sbjct: 213 AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKSMENLDTDFEYEVFDNDNTDADGGRMLR 272

[Close]

BLAST of HG10001535 vs. ExPASy TrEMBL
Match: A0A6J1JHF0 (uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 21  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAK 80
           I+DLDLTKPGVRKPPK  EFQVTTEE LRKADFRNVRFLANFIT+AGI+ KRS T ISAK
Sbjct: 151 IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSKTRISAK 210

Query: 81  AQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRS 140
           AQRKVAREIKTARAFGLMPFTTMGTKSF+FGKTME+LD DYEYEVFDNN   DGG PL S
Sbjct: 211 AQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEVFDNN---DGGHPLGS 267

[Close]

BLAST of HG10001535 vs. TAIR 10
Match: AT1G07210.1 (Ribosomal protein S18 )

HSP 1 Score: 147.9 bits (372), Expect = 6.3e-36
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 41  QVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPF 100
           +VTTEE L+ ADFRNVRFLANFITEAGI+ KR  TGISAKAQRK+AREIKTARAFGLMPF
Sbjct: 165 EVTTEEVLKNADFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPF 224

Query: 101 TTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGG 136
           TTMGTK+F FGKTMEN D D+EYEV D++ + D G
Sbjct: 225 TTMGTKAFQFGKTMENRDQDFEYEVLDDDDEFDEG 259

The following BLAST results are available for this feature:

BLAST of HG10001535 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532312.1	2.1e-49	88.03	uncharacterized protein LOC111794503 [Cucurbita pepo subsp. pepo]	[more]
XP_022947026.1	2.1e-49	88.03	uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata]	[more]
XP_004143160.1	4.7e-49	87.60	uncharacterized protein LOC101213524 [Cucumis sativus] >KAE8646950.1 hypothetica...	[more]
XP_022148322.1	7.9e-49	85.00	uncharacterized protein LOC111017003 [Momordica charantia]	[more]
XP_008464035.1	1.0e-48	86.78	PREDICTED: uncharacterized protein LOC103502018 [Cucumis melo] >KAA0061825.1 put...	[more]

BLAST of HG10001535 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O66476	1.7e-06	47.27	30S ribosomal protein S18 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rpsR PE=...	[more]
P62659	1.7e-06	41.89	30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 703...	[more]
Q5SLQ0	1.7e-06	41.89	30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 /...	[more]
A5F3K5	3.0e-06	46.55	30S ribosomal protein S18 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Cl...	[more]
Q9KUZ0	3.0e-06	46.55	30S ribosomal protein S18 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El...	[more]

BLAST of HG10001535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G586	1.0e-49	88.03	uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1D4R9	3.8e-49	85.00	uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5A7V7I3	5.0e-49	86.78	Putative Ribosomal protein S18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CM21	5.0e-49	86.78	uncharacterized protein LOC103502018 OS=Cucumis melo OX=3656 GN=LOC103502018 PE=...	[more]
A0A6J1JHF0	1.2e-47	85.83	uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513...	[more]

BLAST of HG10001535 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07210.1	6.3e-36	77.89	Ribosomal protein S18	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 90..100 score: 52.07 coord: 58..68 score: 39.67 coord: 76..90 score: 42.42
IPR001648	Ribosomal protein S18	TIGRFAM	TIGR00165	TIGR00165	coord: 44..101 e-value: 7.4E-13 score: 46.5
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 50..98 e-value: 1.1E-16 score: 60.8
IPR001648	Ribosomal protein S18	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 22..133
IPR036870	Ribosomal protein S18 superfamily	GENE3D	4.10.640.10	Ribosomal protein S18	coord: 39..103 e-value: 1.9E-19 score: 71.2
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	46911	Ribosomal protein S18	coord: 30..101
None	No IPR available	PANTHER	PTHR13479:SF40	28S RIBOSOMAL PROTEIN S18C, MITOCHONDRIAL	coord: 22..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001535.1	HG10001535.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome