Cucsat.G6303 (gene) Cucumber (B10) v3

Overview
NameCucsat.G6303
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionEmbryogenesis-like protein
Locationctg1425: 1023277 .. 1023981 (+)
RNA-Seq ExpressionCucsat.G6303
SyntenyCucsat.G6303
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGTGTTGCGTCTTATTACGTGTAAAACCCCTCATAACGCTGAACTGAGGTTTCCTTTCTTCCTTTTCTCACATCTTCATTCTATTTGCTCAATTCCTCAAAATGAGCCCTCGTTCACGCCTTCCACTCCACAGATTCCTTCTTCGGATATCTCAGCCTTCAATTTCTTCATCTTCCTCTACCTTCCGCCCAATTCTGGACTTCTCTGTGAAGCCATGGCGAGCAGATGATCTCCATTTTCCCTACCTAATGAGCTTGAATAGTCGGTTCGTATCGCTTCACTGTTTTCGGAGTTACAGCGGTGCTTCGGGCTCGTCGGAGCCCGATTTCGATCAGGTTAGAGAGGTGGACAGGATCAATCTCAAGTTCGCCGAAGCTAGAGAAGAAATTGAGTTAGCTATGGAGTCTAAAGAGACTGTATATTTTGATGAAGAGGCTGAGTGTGCTCGGGATGCTGTCAAAGAAGTTTTAGAACTGTACGAGGGGCTTCTGGCGAAGTTGTCTGACAGCGAAAGGAAGGCGCTGCAGAGGTCAATGGGGCTTAAGATTGAGCAGCTAAAGGCTGAGCTTAATCAGCTTGACGAGTAATTGAGGTTCATGTATTTTATTTTGTTCTTCCCAATTTTCAACATATCAAATTCCCATTCAGGTTCTTACTTGATTGCTGCTTGTGACTGGGATAGCAAATCTGGCGTTAATAATTC

Coding sequence (CDS)

ATGAGCCCTCGTTCACGCCTTCCACTCCACAGATTCCTTCTTCGGATATCTCAGCCTTCAATTTCTTCATCTTCCTCTACCTTCCGCCCAATTCTGGACTTCTCTGTGAAGCCATGGCGAGCAGATGATCTCCATTTTCCCTACCTAATGAGCTTGAATAGTCGGTTCGTATCGCTTCACTGTTTTCGGAGTTACAGCGGTGCTTCGGGCTCGTCGGAGCCCGATTTCGATCAGGTTAGAGAGGTGGACAGGATCAATCTCAAGTTCGCCGAAGCTAGAGAAGAAATTGAGTTAGCTATGGAGTCTAAAGAGACTGTATATTTTGATGAAGAGGCTGAGTGTGCTCGGGATGCTGTCAAAGAAGTTTTAGAACTGTACGAGGGGCTTCTGGCGAAGTTGTCTGACAGCGAAAGGAAGGCGCTGCAGAGGTCAATGGGGCTTAAGATTGAGCAGCTAAAGGCTGAGCTTAATCAGCTTGACGAGTAA

Protein sequence

MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPWRADDLHFPYLMSLNSRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAECARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE
Homology
BLAST of Cucsat.G6303 vs. ExPASy Swiss-Prot
Match: Q9M9H3 (Embryogenesis-like protein OS=Arabidopsis thaliana OX=3702 GN=EML PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-28
Identity = 70/109 (64.22%), Postives = 89/109 (81.65%), Query Frame = 0

Query: 53  NSRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEA 112
           N+ F   +  R  +G+S  S PD ++V  VD INLKFAEAREEIE+AM++KETVYF+EEA
Sbjct: 71  NASFFLENQRRYSTGSSSGSPPDVNKV--VDEINLKFAEAREEIEMAMDAKETVYFNEEA 130

Query: 113 ECARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 162
           ECARDAV EVLE+++GLL K+++ E+ +LQRSMGLKIEQLKAEL QL+E
Sbjct: 131 ECARDAVAEVLEMFQGLLGKVTEKEKASLQRSMGLKIEQLKAELEQLNE 177

BLAST of Cucsat.G6303 vs. NCBI nr
Match: XP_004140949.1 (uncharacterized protein LOC101219561 [Cucumis sativus] >KGN46106.1 hypothetical protein Csa_005419 [Cucumis sativus])

HSP 1 Score: 305 bits (782), Expect = 2.17e-104
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0

Query: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPWRADDLHFPYLMSLNSRFVSLH 60
           MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPWRADDLHFPYLMSLNSRFVSLH
Sbjct: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPWRADDLHFPYLMSLNSRFVSLH 60

Query: 61  CFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAECARDAVK 120
           CFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIE AMESKETVYFDEEAECARDAVK
Sbjct: 61  CFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVK 120

Query: 121 EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161
           EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE
Sbjct: 121 EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of Cucsat.G6303 vs. NCBI nr
Match: XP_008456723.1 (PREDICTED: uncharacterized protein LOC103496582 [Cucumis melo] >KAA0031626.1 uncharacterized protein E6C27_scaffold139G003950 [Cucumis melo var. makuwa] >TYK04483.1 uncharacterized protein E5676_scaffold409G00930 [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (697), Expect = 1.97e-91
Identity = 146/161 (90.68%), Postives = 150/161 (93.17%), Query Frame = 0

Query: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPWRADDLHFPYLMSLNSRFVSLH 60
           MSPRSRLPL+RFLL ISQPSISSSSS FR ILDFS KPWRADDLHF YLMS NS+FV+  
Sbjct: 1   MSPRSRLPLYRFLLGISQPSISSSSSCFRRILDFSAKPWRADDLHFSYLMSSNSQFVTFQ 60

Query: 61  CFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAECARDAVK 120
            FRS+S ASGSSEPDFDQVREVDRINLKFAEAREEIE AMESKETVYFDEEAECARDAVK
Sbjct: 61  SFRSFSAASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVK 120

Query: 121 EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161
           EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE
Sbjct: 121 EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of Cucsat.G6303 vs. NCBI nr
Match: XP_038885743.1 (uncharacterized protein LOC120076030 [Benincasa hispida])

HSP 1 Score: 220 bits (560), Expect = 1.37e-70
Identity = 127/168 (75.60%), Postives = 136/168 (80.95%), Query Frame = 0

Query: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPW-------RADDLHFPYLMSLN 60
           M+PR RLP +R L+  SQ SISSSS +FR I DF+VKP        RADDLHF YLMS N
Sbjct: 1   MNPRLRLPFYRLLVGKSQASISSSSCSFRRIQDFTVKPKSEFPNESRADDLHFSYLMSSN 60

Query: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAE 120
                    RSYSG SG+SEP+FDQVREVDRINLKFAEAREEIE AMESKETVYFDEEAE
Sbjct: 61  ---------RSYSGGSGTSEPEFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161
           CARDAVKEVLE+YEGLLAKL +SERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLEMYEGLLAKLPESERKALQRSMGLKIEQLKAELKQLDE 159

BLAST of Cucsat.G6303 vs. NCBI nr
Match: XP_022990474.1 (uncharacterized protein LOC111487326 [Cucurbita maxima] >XP_022990475.1 uncharacterized protein LOC111487326 [Cucurbita maxima])

HSP 1 Score: 218 bits (555), Expect = 1.06e-69
Identity = 123/168 (73.21%), Postives = 134/168 (79.76%), Query Frame = 0

Query: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKP-------WRADDLHFPYLMSLN 60
           MSPR RL L R L   SQ S SSSS + R ILD ++ P        R DDLHF YLM  N
Sbjct: 1   MSPRLRLSLCRLLAGKSQASTSSSSCSVRRILDSALLPNSEFPYKLRPDDLHFSYLMRSN 60

Query: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAE 120
            +FV+L C R YSG SG+SEP+FDQ+REVDRINLKFAEAREEIE AMESKETVYFDEEAE
Sbjct: 61  RQFVTLQCLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161
           CARDAVKEVLE+YEGLLAKL ++ERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLEMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 168

BLAST of Cucsat.G6303 vs. NCBI nr
Match: KAG6602205.1 (hypothetical protein SDJN03_07438, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (541), Expect = 1.44e-67
Identity = 121/168 (72.02%), Postives = 133/168 (79.17%), Query Frame = 0

Query: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKP-------WRADDLHFPYLMSLN 60
           MSPR RL L R L   SQ S SSSS + R ILD S+ P        R DDLHF Y+M  N
Sbjct: 1   MSPRLRLSLCRLLAGKSQASTSSSSCSVRRILDSSLLPNSEFPYKLRPDDLHFSYVMRSN 60

Query: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAE 120
            +FV+L   R YSG SG+SEP+FDQ+REVDRINLKFAEAREEIE AMESKETVYFDEEAE
Sbjct: 61  RQFVTLQWLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161
           CARDAVKEVL++YEGLLAKL ++ERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 168

BLAST of Cucsat.G6303 vs. ExPASy TrEMBL
Match: A0A0A0KEB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052810 PE=4 SV=1)

HSP 1 Score: 305 bits (782), Expect = 1.05e-104
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0

Query: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPWRADDLHFPYLMSLNSRFVSLH 60
           MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPWRADDLHFPYLMSLNSRFVSLH
Sbjct: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPWRADDLHFPYLMSLNSRFVSLH 60

Query: 61  CFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAECARDAVK 120
           CFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIE AMESKETVYFDEEAECARDAVK
Sbjct: 61  CFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVK 120

Query: 121 EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161
           EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE
Sbjct: 121 EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of Cucsat.G6303 vs. ExPASy TrEMBL
Match: A0A5D3BXL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00930 PE=4 SV=1)

HSP 1 Score: 273 bits (697), Expect = 9.55e-92
Identity = 146/161 (90.68%), Postives = 150/161 (93.17%), Query Frame = 0

Query: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPWRADDLHFPYLMSLNSRFVSLH 60
           MSPRSRLPL+RFLL ISQPSISSSSS FR ILDFS KPWRADDLHF YLMS NS+FV+  
Sbjct: 1   MSPRSRLPLYRFLLGISQPSISSSSSCFRRILDFSAKPWRADDLHFSYLMSSNSQFVTFQ 60

Query: 61  CFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAECARDAVK 120
            FRS+S ASGSSEPDFDQVREVDRINLKFAEAREEIE AMESKETVYFDEEAECARDAVK
Sbjct: 61  SFRSFSAASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVK 120

Query: 121 EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161
           EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE
Sbjct: 121 EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of Cucsat.G6303 vs. ExPASy TrEMBL
Match: A0A1S3C573 (uncharacterized protein LOC103496582 OS=Cucumis melo OX=3656 GN=LOC103496582 PE=4 SV=1)

HSP 1 Score: 273 bits (697), Expect = 9.55e-92
Identity = 146/161 (90.68%), Postives = 150/161 (93.17%), Query Frame = 0

Query: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKPWRADDLHFPYLMSLNSRFVSLH 60
           MSPRSRLPL+RFLL ISQPSISSSSS FR ILDFS KPWRADDLHF YLMS NS+FV+  
Sbjct: 1   MSPRSRLPLYRFLLGISQPSISSSSSCFRRILDFSAKPWRADDLHFSYLMSSNSQFVTFQ 60

Query: 61  CFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAECARDAVK 120
            FRS+S ASGSSEPDFDQVREVDRINLKFAEAREEIE AMESKETVYFDEEAECARDAVK
Sbjct: 61  SFRSFSAASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVK 120

Query: 121 EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161
           EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE
Sbjct: 121 EVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of Cucsat.G6303 vs. ExPASy TrEMBL
Match: A0A6J1JQ75 (uncharacterized protein LOC111487326 OS=Cucurbita maxima OX=3661 GN=LOC111487326 PE=4 SV=1)

HSP 1 Score: 218 bits (555), Expect = 5.15e-70
Identity = 123/168 (73.21%), Postives = 134/168 (79.76%), Query Frame = 0

Query: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKP-------WRADDLHFPYLMSLN 60
           MSPR RL L R L   SQ S SSSS + R ILD ++ P        R DDLHF YLM  N
Sbjct: 1   MSPRLRLSLCRLLAGKSQASTSSSSCSVRRILDSALLPNSEFPYKLRPDDLHFSYLMRSN 60

Query: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAE 120
            +FV+L C R YSG SG+SEP+FDQ+REVDRINLKFAEAREEIE AMESKETVYFDEEAE
Sbjct: 61  RQFVTLQCLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161
           CARDAVKEVLE+YEGLLAKL ++ERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLEMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 168

BLAST of Cucsat.G6303 vs. ExPASy TrEMBL
Match: A0A6J1HL89 (uncharacterized protein LOC111464557 OS=Cucurbita moschata OX=3662 GN=LOC111464557 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 4.01e-67
Identity = 120/168 (71.43%), Postives = 133/168 (79.17%), Query Frame = 0

Query: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKP-------WRADDLHFPYLMSLN 60
           MSPR RL L R L   SQ S SSSS + R ILD S+ P        R DDLHF Y+M  N
Sbjct: 1   MSPRLRLSLCRLLAGKSQASTSSSSCSVRRILDSSLLPNSEFPYKLRPDDLHFSYVMRSN 60

Query: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEAE 120
            +FV+L   R YSG SG+SEP+FDQ+REVDRINLKFAEAREEIE AMESKETVYF+EEAE
Sbjct: 61  RQFVTLQWLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKETVYFNEEAE 120

Query: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161
           CARDAVKEVL++YEGLLAKL ++ERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 168

BLAST of Cucsat.G6303 vs. TAIR 10
Match: AT1G71730.1 (unknown protein; Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-29
Identity = 70/109 (64.22%), Postives = 89/109 (81.65%), Query Frame = 0

Query: 53  NSRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIELAMESKETVYFDEEA 112
           N+ F   +  R  +G+S  S PD ++V  VD INLKFAEAREEIE+AM++KETVYF+EEA
Sbjct: 71  NASFFLENQRRYSTGSSSGSPPDVNKV--VDEINLKFAEAREEIEMAMDAKETVYFNEEA 130

Query: 113 ECARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 162
           ECARDAV EVLE+++GLL K+++ E+ +LQRSMGLKIEQLKAEL QL+E
Sbjct: 131 ECARDAVAEVLEMFQGLLGKVTEKEKASLQRSMGLKIEQLKAELEQLNE 177

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9M9H31.8e-2864.22Embryogenesis-like protein OS=Arabidopsis thaliana OX=3702 GN=EML PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_004140949.12.17e-10499.38uncharacterized protein LOC101219561 [Cucumis sativus] >KGN46106.1 hypothetical ... [more]
XP_008456723.11.97e-9190.68PREDICTED: uncharacterized protein LOC103496582 [Cucumis melo] >KAA0031626.1 unc... [more]
XP_038885743.11.37e-7075.60uncharacterized protein LOC120076030 [Benincasa hispida][more]
XP_022990474.11.06e-6973.21uncharacterized protein LOC111487326 [Cucurbita maxima] >XP_022990475.1 uncharac... [more]
KAG6602205.11.44e-6772.02hypothetical protein SDJN03_07438, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KEB41.05e-10499.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052810 PE=4 SV=1[more]
A0A5D3BXL99.55e-9290.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C5739.55e-9290.68uncharacterized protein LOC103496582 OS=Cucumis melo OX=3656 GN=LOC103496582 PE=... [more]
A0A6J1JQ755.15e-7073.21uncharacterized protein LOC111487326 OS=Cucurbita maxima OX=3661 GN=LOC111487326... [more]
A0A6J1HL894.01e-6771.43uncharacterized protein LOC111464557 OS=Cucurbita moschata OX=3662 GN=LOC1114645... [more]
Match NameE-valueIdentityDescription
AT1G71730.11.3e-2964.22unknown protein; Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 82..102
NoneNo IPR availablePANTHERPTHR35706F14O23.11 PROTEINcoord: 3..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G6303.T1Cucsat.G6303.T1mRNA