Cucsat.G616 (gene) Cucumber (B10) v3

Overview
NameCucsat.G616
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg1: 11910883 .. 11912325 (-)
RNA-Seq ExpressionCucsat.G616
SyntenyCucsat.G616
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTATTCAGCTACCTTCATGAGAAAAAGCTTATATCATCAATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAGTTCTCTTTTTCCCATTATTTTATCATTATTATAAATGAATATATAAAATAAAATCTATTTTAGTACACAAGCAAAGAAACATATACTTCCCTTTAAAAGAAATGGGAGCTAAGTTGGTAAGAAAACGATAGAGGTTGTTTGGAGAGGTGATATGAGCACAACAACCAATTTGGGGGTGATGGTAAAATATGAAAATGGTGGAAAAGAGGGTTGAGTCGAATAAAATGCCTTCAGCATTAAAAATCGAGTCCAAAATGTTTAATAAAAACAAAACATGCGTTTTGGATTACATTACACTATAAACAAATTACATCAGGGACATCCAAACGCCTCCATAGTTTCATTTTGAATTTTGTTAAATCACTAACTTACTGATTGATGTAAACGAGCTAATGAACGAAAGCTAATTTAATATTACACTACAAGAAATTGGGGATCTCTCAACGCATCATGTCATCGAGATATTACAAAATGGCAGCAGGAGTAGTTCTCCTGAAGACTAAATAGTCGTTGCAAATGTGGTTGAAAAAACCACCTCGAGAGAGGATGCAAGGTGTCAAGAATGGATCATTCCCGATGCACCATTAATACGGTGTTGAGAGTTTTGAACTCCCGACACATTTCATTTATGCATCGGAAACGTATCATTCTAGACGATGCAATCGTGTCGGGAATGGACGTCCCAACACCCAATGCATAAGTGAAACCGTTGAAAATTGAGGAGCTTCAACTCCTGACGGCGTACGTTGGAAATTGTTACATTTTTATTTCTTTTTTTAATTATTATTTTATTTTATTTTTTTAGGTATACCTCGGTGCTATTTCGTTTTCAGTTTCGATCTAAAATTCAATAAAATAGCTTAACAAAATGTTATGAGTTAATTAATATAACTAAACTAAAATAGGAAAGTTCCAACTACAAAATTGGAACATATATTTCATAACAAACATAGAACACATGTTTCATAACAATGTGCTTTTAAAATAATAAGTATATATAAAAAAAGACGTCGATCATTTAACAAAAATCTCCCCTACGATTTCAGGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGATATATGAAGCTTTACAATTGTTTGGATGATCATCAGCTATGTTTGTCTTTTGTGGAGCGTCAATCTCTAAGTCTTCTTTACCC

Coding sequence (CDS)

CTATTCAGCTACCTTCATGAGAAAAAGCTTATATCATCAATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGA

Protein sequence

LFSYLHEKKLISSMVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPTSADFPWGGGYVRRPPILNNP
Homology
BLAST of Cucsat.G616 vs. NCBI nr
Match: KAE8650427.1 (hypothetical protein Csa_010020 [Cucumis sativus])

HSP 1 Score: 176 bits (446), Expect = 3.20e-55
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 14  MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAV 73
           MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAV
Sbjct: 1   MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAV 60

Query: 74  VVPKVYKPTSADFPWGGGYVRRPPILNNP 102
           VVPKVYKPTSADFPWGGGYVRRPPILNNP
Sbjct: 61  VVPKVYKPTSADFPWGGGYVRRPPILNNP 89

BLAST of Cucsat.G616 vs. NCBI nr
Match: KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 9.12e-43
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 18  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 77
           MASSPMKISLMLKLLFFA LLFIA TT+SATNNIPLLHKPPIRKM V Y+KGEKAVVVPK
Sbjct: 1   MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60

Query: 78  VYKPTSADFPWGGGYVRRPPILNNP 102
           V +PTS D PWGGGYV RPPILN+P
Sbjct: 61  VNRPTSDDVPWGGGYVHRPPILNSP 85

BLAST of Cucsat.G616 vs. NCBI nr
Match: KAE8650426.1 (hypothetical protein Csa_009889 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 3.85e-19
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0

Query: 14  MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE- 73
           M  KMAS P +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + 
Sbjct: 1   MPQKMAS-PWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDG 60

Query: 74  KAVVVPKVYKPTSADFPWGGGYVRRPPILNNP 102
           KA VVP+V KPTS DFPWGGGY+   P L+NP
Sbjct: 61  KAGVVPRVIKPTSEDFPWGGGYIH--PHLSNP 87

BLAST of Cucsat.G616 vs. NCBI nr
Match: KAG7014832.1 (hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.8 bits (146), Expect = 1.10e-09
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 24  KISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPTS 83
           +ISL+L+LLFFA LL    +T SA N+  LLH P   KMA+ Y +  K        KPT+
Sbjct: 8   RISLLLRLLFFALLL--VASTASAANSKALLHNPRTPKMAMEYGQVGKGTSK----KPTA 67

Query: 84  ADFPWGGGYVRRPPILNN 101
            D PWGGGYV  PPIL+N
Sbjct: 68  DDVPWGGGYV--PPILSN 77

BLAST of Cucsat.G616 vs. NCBI nr
Match: KAG6600177.1 (hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 48.9 bits (115), Expect = 4.29e-05
Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = 0

Query: 25 ISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPTSA 84
          IS +LKLL    LL IA + ISA +N P      IRKM + Y+   KAVVV K  +  SA
Sbjct: 7  ISFVLKLLVCFALLLIA-SPISAMDNTPR-----IRKMGMEYKLVGKAVVVAKPVRQLSA 66

Query: 85 DFPWGGGY 92
          D PWGGGY
Sbjct: 67 DSPWGGGY 68

BLAST of Cucsat.G616 vs. ExPASy TrEMBL
Match: A0A0A0L8B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 5.38e-53
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 18  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 77
           MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK
Sbjct: 1   MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 78  VYKPTSADFPWGGGYVRRPPILNNP 102
           VYKPTSADFPWGGGYVRRPPILNNP
Sbjct: 61  VYKPTSADFPWGGGYVRRPPILNNP 85

BLAST of Cucsat.G616 vs. ExPASy TrEMBL
Match: A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 4.41e-43
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 18  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 77
           MASSPMKISLMLKLLFFA LLFIA TT+SATNNIPLLHKPPIRKM V Y+KGEKAVVVPK
Sbjct: 1   MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60

Query: 78  VYKPTSADFPWGGGYVRRPPILNNP 102
           V +PTS D PWGGGYV RPPILN+P
Sbjct: 61  VNRPTSDDVPWGGGYVHRPPILNSP 85

BLAST of Cucsat.G616 vs. ExPASy TrEMBL
Match: A0A0A0L653 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.37e-19
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0

Query: 20  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 79
           +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 2   ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61

Query: 80  KVYKPTSADFPWGGGYVRRPPILNNP 102
           +V KPTS DFPWGGGY+   P L+NP
Sbjct: 62  RVIKPTSEDFPWGGGYIH--PHLSNP 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8650427.13.20e-55100.00hypothetical protein Csa_010020 [Cucumis sativus][more]
KAA0067663.19.12e-4385.88hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667... [more]
KAE8650426.13.85e-1956.52hypothetical protein Csa_009889 [Cucumis sativus][more]
KAG7014832.11.10e-0951.28hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6600177.14.29e-0551.47hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0L8B25.38e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1[more]
A0A5D3DJ604.41e-4385.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L6533.37e-1955.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G616.T1Cucsat.G616.T1mRNA