Cucsat.G17213 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G17213
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	protodermal factor 1-like isoform X2
Location	ctg27: 559344 .. 560201 (+)
RNA-Seq Expression	Cucsat.G17213
Synteny	Cucsat.G17213

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGAAGCCTCCTTCCGGTGGTGGTGGACATCACAACCCACCCACTGGTGGTGGTGGATACAACAGCCCTCCATCTCATGATCCCACTCCAACTCCATCTACTCCAACGCCATCAACTCCTTCAGGAGGTGGATACTACAGCCCTCCATCTAACGATCCCACTCCAACTCCATCTACTCCAACGCCATCAACTCCATCTACTCCTTCAGGTGGTGGATACTACAGCCCTCCATCTCATGATCCCACTCCAACTCCATCTACTCCAACGCCATCAACTCCATCTACTCCTTCAGGTGGTGGATACTACAGCCCTCCATCTCATGATCCCACTCCAACTCCATCTACTCCAACGCCATCAACTCCATCTACTCCTTCAGGTGGTGGATACTACAGCCCTCCAACTAATGATCCCACTCCAACTCCATCAACTCCGACACCATCAACTCCCTCTACCCCATCGGGTGGTGGATACTACAGCCCTCCAACATATGATCCCACTCCAACGTCACCATCGACTCCATCGACTCCTTCCGGTGGTGGTGGATACTCTAGCCCTCCAACTTATGATCCTACTCCAACCCCATCAACTCCTTCAGGTGGAGGTGGATATTATAGCCCACCAACTTATGATCCTACTCCATCAACTCCTCCATCAGGCGGTGGTGGATACAATAGCCCTCCAACTTTTGATCCAACACCATCAACTCCTCCTTCAGGTGGTACACCATTCTATGGGACCCCACCAACCACATCAGCCCCACCTTTTGTTCCTGATCCCAATTCTCCCTTCACTGGCACATGCAAGTAAGTAATTACATAATTGTATGAGCAATACTGTGTACTTTTTTTAGTGTTAGT

Coding sequence (CDS)

CGAAGCCTCCTTCCGGTGGTGGTGGACATCACAACCCACCCACTGGTGGTGGTGGATACTACAGCCCTCCATCTCATGATCCCACTCCAACTCCATCTACTCCAACGCCATCAACTCCATCTACTCCTTCAGGTGGTGGATACTACAGCCCTCCATCTCATGATCCCACTCCAACTCCATCTACTCCAACGCCATCAACTCCATCTACTCCTTCAGGTGGTGGATACTACAGCCCTCCAACTAATGATCCCACTCCAACTCCATCAACTCCGACACCATCAACTCCCTCTACCCCATCGGGTGGTGGATACTACAGCCCTCCAACATATGATCCCACTCCAACGTCACCATCGACTCCATCGACTCCTTCCGGTGGTGGTGGATACTCTAGCCCTCCAACTTATGATCCTACTCCAACCCCATCAACTCCTTCAGGTGGAGGTGGATATTATAGCCCACCAACTTATGATCCTACTCCATCAACTCCTCCATCAGGCGGTGGTGGATACAATAGCCCTCCAACTTTTGATCCAACACCATCAACTCCTCCTTCAGGTGGTACACCATTCTATGGGACCCCACCAACCACATCAGCCCCACCTTTTGTTCCTGATCCCAATTCTCCCTTCACTGGCACATGCAAGTAAGTAA

Protein sequence

RSLLPVVVDITTHPLVVVDTTALHLMIPLQLHLLQRHQLHLLLQVVDTTALHLMIPLQLHLLQRHQLHLLLQVVDTTALQLMIPLQLHQLRHHQLPLPHRVVDTTALQHMIPLQRHHRLHRLLPVVVDTLALQLMILLQPHQLLQVEVDIIAHQLMILLHQLLHQAVVDTIALQLLIQHHQLLLQVVHHSMGPHQPHQPHLLFLIPILPSLAHASK

Homology

The following BLAST results are available for this feature:

BLAST of Cucsat.G17213 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G17213 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G17213 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 12..33 score: 40.91 coord: 1..9 score: 40.0 coord: 45..61 score: 51.76 coord: 69..86 score: 44.44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..171
None	No IPR available	PANTHER	PTHR33210:SF18	PROTODERMAL FACTOR 1	coord: 20..288
IPR039923	Protodermal factor 1	PANTHER	PTHR33210	PROTODERMAL FACTOR 1	coord: 20..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G17213.T4	Cucsat.G17213.T4	mRNA
Cucsat.G17213.T2	Cucsat.G17213.T2	mRNA
Cucsat.G17213.T3	Cucsat.G17213.T3	mRNA
Cucsat.G17213.T1	Cucsat.G17213.T1	mRNA