Cucsat.G13121 (gene) Cucumber (B10) v3

Overview
NameCucsat.G13121
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionThioredoxin-dependent peroxiredoxin
Locationctg1838: 468976 .. 472675 (+)
RNA-Seq ExpressionCucsat.G13121
SyntenyCucsat.G13121
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAGAAGAAGAAATCATATCATTTAACTAATCTCCATTTCATTTGAACACTTCCTACGAAAATTACAGCAGCAAAAAAATCTCTCTCTCTCTCTTTAATACTTTTTGTAAATAAAGAAAAGAGGAGCGAAAGAAAAAGGGCGGCATTTCGAATCTTAGCCACAAAAGTTTGAAGGAAAAGCCGAACCCTCATCCTCAAAATGACGATGCGGCTACAGGCGCCATTTCTCCGCCCCAACATCGTCTCAACTCCGTCTTTACCGCTAATAGCCGCCACCTTCTACACTGCACCTCCTCCAATATCGAAGTTCCGAATGCCGGAGACGTCATCCAGTTTGCAATTGAGAATGAGGACACCGAGGCGGAAATTCAATGTTTCGGCAACGCTGGTTCCAGATCAACGGCCGCTGGATTTGACGGAGGAGAACGTGAGACAGGCACTTGGGGAAGCTCGTGTGGAGCTAGCGCAGATATTCGACGACTCGGTCGGCATTACAGGTTTGAGAATTTAATTTCTTGATCAGTGTAGGATTTTAGGATATTGAAGTGGGATGTGAAATTGAGGGAAGAAAGCGATTCAGGAGTGGTGGAATTGGCTGAATTGGACGGACCATTTGTCAAAATTAGTCTGAAAGGTCGATTTTGGCATAAGCGTTCAACAGTTGTAGCTCGGGTCGGCAATTATTTGAAGAACAGAATCCCCGTAAGTCTCATTCTTTCTCACAATTTTTTTTAACAGCGTATTTTTATATATATCTACAATATGTTTGGAATGCATTTTTGTTTAATTTAAAAAGTATCTTTTTTAAGAAAAAAAAACAAGTATCACCGAAAATATTCATTCTTTAATTAAAAAAAGAGTTACAGATTTAGTTCTTACTTTTTATTTTTACACTAATTTCACTTCTAATTTTCTTTCTTAATATATTTTCGATCTTGTGAGATCTAAAGTGTCAAAAAAAAAAAAAAAAGCGAAGTAGTTTTCAAACAACCTTTGATTTTTAATTTTGATTCAATTCTAACAAGTCTCGTGAAAAAATTACTTTATACTTGAGTTAGTGGAATTTTGGGCAGAATTTATATAGTTCTTGGTGTGGGTTGTTGGCTTGGTTCACGTCCAGTTCTAATGAAAATTCTTACCTTAGAGTTGCTAAGATTTGTAAGAAACACAATAGAAAAACAACAACAACAAATGAAGATGAGAGAAGATGGAAACAAGAGAAAATATTATACCAGGATCAAGTGATTAAATTATTGATTTACAGGCAAATAAAAAACTACCAACTTTAAAACACTACCACTAACTTTAAAAACCTTCCGAATCAACCTCACTAAGTCATTAGGCCACTTGCTTTTGCTTCTTTGAGATTCACACAACTAGTTAATCTAATATGACATGGTTTTCTACAACCTGTTCCAACTTGCCGCACCTAAAACATCCCTTCTATTTATCCTTGCATTGCTCTTCAACCTTGGATTATAATTACTGCTCTAATTTGAAGATCAATTAACTCTTCTTTTCTCTTTTGCATAGAGAACAACTTCCACCTAAAATAAGATTGCCTGCTATTGCCCAACATTTGTTTCATCAACACTTCTTGATATGCTCTCTTTTTTTCTCTTCTGATATTACATTTCATAAAGTTTTGGTTTTCAAAATGCTGCAATCTCATTGTGTCCTTTTGAGTGAACTACCTCTAATTTCAATTGTCTCCTACACTTTCTTTAGAGAATTCTCGTTATGAACATGCTCGATAACTCCTTACCAATAGAAATTCGTAAAGCAAATAAGACTTTGTCACACTTAACTCCTTACCAATGCTCAATAAATCTCGTCCTTGAAGAAAAGCTTCCATACATAGCGTCCAATTCTAGCTATATAATTATCACCGGGAAAGTTTATCTACACAAATAATGTTTCCATTGTTCATTTTCAATGAATATTTAATCTCAAACACAAAACAAAAAATTTGAAGGGTTTGATACTATGTAACGAAAAACAACAAACGAAAAGAACGAAAGTGGGAAACAAGAGAAAATATTGAAAGGAGGATTAAGTGCTTTAATTCAGTTCTATACTTTCATTGAAGTAGAAGCATTAAAAGTGTTTATAGGCAAATAAAAACTCCCCACTAATGCACTAACCTTAAATCTCTACCACTAACCTTAAAAGTTTTATTTAATCAATACACTAAGCCATTTTGCTGGCCATTACTTCTTAATAAGACCACTGCCTTAAACAAAAGCTAGCAACCGAGACTAAACTAAAAATAATTCCCTTACTTGCTAATTAAGTTTGCACTATAGATCTATGGATGAATGGTTTTTTATTGGGTTGGACATCATCATTTTCTTGTTGGCATGACTAACCACACTTAGAAGGTTGATATGACACATCAATCAAACTAGCATAGTTGTATGAGAAATTTGAAAAATGTATACAATTTGTCGAACTTACATGGGCTATTTTGACTTGACCACTCTCATCTACCAAATCATTAAAATAACAATGTTTATACTTAATATGAACCTACTAGAATCAAAATAAAAAATTGAAAGACAGAACTAAATAACTTTTAATACACACCAATCAAAGCTTTTAGACCTATTGTTTCATTTAACTTAAAAAAAGAATCATTTTAGTCAATTCAATGTATATTGGCATATATATATATTATATGATGCTTCCAATTGTGTTAGAGTAAGGTACATTTAACAATTAACATATCAATCTTTTTGTTAAGAGTTGGTGGCTTTATGATCGGTCAAAACTGCCTTTGCCAAGCGTGTCCTAATAATAGATTGAATCTTTCGAGTGGAATTTATTAGGTTAAAAAAAAACCAACCTAACTTTTTAGGTCTATTTTATCTTTATTTTGAATTTCCATAATATCTGTTTAGCTTCATAAATTTTAAAAACATATCCCTATTTTAACTCCTAAATTTCAACATGTCTAATTTAATTTCATAGTCTTTGTTATTATTTTGTTTCTTCATGACTCTTATCTAAAATTACTTGGCCAATCCTTGTTTTTATTTATTTATTTATTTTGAAAGTGAGGACCCAAATCAAATGTTTTGAAAATTGAAATATGTAATGAAAATAAAACGAAATTTCAGGTCCAGTATAAGATTTAAACCAATTTCTTATCTTCGTTTCACATGATCACGTGAATTGATTTTTTCCTCTACTTTTAGATACTTTCATGCATAGACTTTTGTCTCATTTTCATCTGTAAATGTTGAAAGGCTTAAAGAATAATATTGTGATCACAATTTTGATCGAGGTAAAAAAGAGAAGAAGAGTACTATATGAATTGATATCAAACTAAAGAGTCTGATTAGCACTTTTTTTTTTTTTGTATAACTTTTAATTTGGTTAAACATGTTGGATTATTGCAACTATGAATAGTTAATATAAGTTGTTGATGCAGGAGATTTTGGAAGTTGAAATAGAAGATGAGAGTCAATTGGATGATAGTCCTGCAAGCTTTTAATTAAAACCCATTTCTCTATTGTAATTAATGTACTTTTTTGACAAGAATTATGTAGATCACAACACCTCTAATTTGCCATCTTAATTATTTGATTGAAACATAGATATACAAATGTAATTTATTATCTATTTAAAAACGTTTGTTCTAGTTTTTGAATTTTTAAAAGAGTATAGATTGATCTTTGATATTAGGATTTCATTATC

Coding sequence (CDS)

ATGACGATGCGGCTACAGGCGCCATTTCTCCGCCCCAACATCGTCTCAACTCCGTCTTTACCGCTAATAGCCGCCACCTTCTACACTGCACCTCCTCCAATATCGAAGTTCCGAATGCCGGAGACGTCATCCAGTTTGCAATTGAGAATGAGGACACCGAGGCGGAAATTCAATGTTTCGGCAACGCTGGTTCCAGATCAACGGCCGCTGGATTTGACGGAGGAGAACGTGAGACAGGCACTTGGGGAAGCTCGTGTGGAGCTAGCGCAGATATTCGACGACTCGGTCGGCATTACAGGTTTGAGAATTTAA

Protein sequence

MTMRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTPRRKFNVSATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGLRI
Homology
[Close]
BLAST of Cucsat.G13121 vs. NCBI nr
Match: XP_004136506.1 (uncharacterized protein LOC101205788 [Cucumis sativus] >KGN59186.1 hypothetical protein Csa_001821 [Cucumis sativus])

HSP 1 Score: 193 bits (490), Expect = 6.26e-61
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MTMRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTPRRKFNVS 60
           MTMRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTPRRKFNVS
Sbjct: 1   MTMRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTPRRKFNVS 60

Query: 61  ATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGL 101
           ATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITG+
Sbjct: 61  ATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGV 101

[Close]
BLAST of Cucsat.G13121 vs. NCBI nr
Match: XP_008442900.1 (PREDICTED: uncharacterized protein LOC103486663 [Cucumis melo])

HSP 1 Score: 164 bits (415), Expect = 1.54e-49
Identity = 87/99 (87.88%), Postives = 91/99 (91.92%), Query Frame = 0 

Query: 3   MRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTPRRKFNVSAT 62
           MRLQAPFLR NIVS PSL L AATF+TAPPPISKFR PET SSL+L MRTPRRK NVSAT
Sbjct: 1   MRLQAPFLRHNIVSPPSLSLTAATFFTAPPPISKFRPPETPSSLRLIMRTPRRKLNVSAT 60

Query: 63  LVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGL 101
           LVPDQRPLDLTEENV+QALGEARVELAQIFDDSVGITG+
Sbjct: 61  LVPDQRPLDLTEENVKQALGEARVELAQIFDDSVGITGV 99

[Close]
BLAST of Cucsat.G13121 vs. NCBI nr
Match: XP_038903952.1 (uncharacterized protein LOC120090394 isoform X2 [Benincasa hispida])

HSP 1 Score: 129 bits (325), Expect = 8.27e-36
Identity = 73/103 (70.87%), Postives = 80/103 (77.67%), Query Frame = 0 

Query: 3   MRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTP----RRKFN 62
           MRLQAPFLR NIVS+PS   IAATF+T+ P IS FR P +S   + R RTP    RR+  
Sbjct: 1   MRLQAPFLRHNIVSSPSPSPIAATFFTSAPSISTFRPPHSSLRFRFRTRTPVDSQRRRLT 60

Query: 63  VSATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGL 101
           VSAT VPDQRPLDLTEENVRQALGE RVELAQIFD SVGITG+
Sbjct: 61  VSATAVPDQRPLDLTEENVRQALGEVRVELAQIFDGSVGITGV 103

[Close]
BLAST of Cucsat.G13121 vs. NCBI nr
Match: XP_038903951.1 (uncharacterized protein LOC120090394 isoform X1 [Benincasa hispida])

HSP 1 Score: 129 bits (325), Expect = 9.29e-36
Identity = 73/103 (70.87%), Postives = 80/103 (77.67%), Query Frame = 0 

Query: 3   MRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTP----RRKFN 62
           MRLQAPFLR NIVS+PS   IAATF+T+ P IS FR P +S   + R RTP    RR+  
Sbjct: 1   MRLQAPFLRHNIVSSPSPSPIAATFFTSAPSISTFRPPHSSLRFRFRTRTPVDSQRRRLT 60

Query: 63  VSATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGL 101
           VSAT VPDQRPLDLTEENVRQALGE RVELAQIFD SVGITG+
Sbjct: 61  VSATAVPDQRPLDLTEENVRQALGEVRVELAQIFDGSVGITGV 103

[Close]
BLAST of Cucsat.G13121 vs. NCBI nr
Match: KAG6580734.1 (hypothetical protein SDJN03_20736, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017487.1 hypothetical protein SDJN02_19352 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102 bits (255), Expect = 3.13e-25
Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 0 

Query: 3   MRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTP--------- 62
           MRLQ  FLR NI  +PS   + ATF+T+ PPIS         S QLR+RTP         
Sbjct: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISY--------SWQLRVRTPKLTLPPLES 60

Query: 63  -RRKFNVSATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGL 101
            R K  VSAT VPD RPLDLTE+NVRQALG+AR ELAQIFD SVGITG+
Sbjct: 61  RRPKLVVSATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGV 101

[Close]
BLAST of Cucsat.G13121 vs. ExPASy TrEMBL
Match: A0A0A0LGR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778420 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 3.03e-61
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MTMRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTPRRKFNVS 60
           MTMRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTPRRKFNVS
Sbjct: 1   MTMRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTPRRKFNVS 60

Query: 61  ATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGL 101
           ATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITG+
Sbjct: 61  ATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGV 101

[Close]
BLAST of Cucsat.G13121 vs. ExPASy TrEMBL
Match: A0A1S3B7J1 (uncharacterized protein LOC103486663 OS=Cucumis melo OX=3656 GN=LOC103486663 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 7.46e-50
Identity = 87/99 (87.88%), Postives = 91/99 (91.92%), Query Frame = 0 

Query: 3   MRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTPRRKFNVSAT 62
           MRLQAPFLR NIVS PSL L AATF+TAPPPISKFR PET SSL+L MRTPRRK NVSAT
Sbjct: 1   MRLQAPFLRHNIVSPPSLSLTAATFFTAPPPISKFRPPETPSSLRLIMRTPRRKLNVSAT 60

Query: 63  LVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGL 101
           LVPDQRPLDLTEENV+QALGEARVELAQIFDDSVGITG+
Sbjct: 61  LVPDQRPLDLTEENVKQALGEARVELAQIFDDSVGITGV 99

[Close]
BLAST of Cucsat.G13121 vs. ExPASy TrEMBL
Match: A0A6J1J196 (uncharacterized protein LOC111481776 OS=Cucurbita maxima OX=3661 GN=LOC111481776 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 6.09e-25
Identity = 63/104 (60.58%), Postives = 72/104 (69.23%), Query Frame = 0 

Query: 3   MRLQAPFLRPNIVSTPSLPLIAATFYTAPPPIS-----KFRMPETSSSLQLRMRTPRRKF 62
           MRLQ  FLR NI  +PS   + ATF+T+ PPIS     + R P T + L L  R P  K 
Sbjct: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWRLRVRTP-TLTLLPLESRRP--KL 60

Query: 63  NVSATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGL 101
            VSAT VPD RPLDLTE+NVRQALG+AR ELAQIFD SVGITG+
Sbjct: 61  VVSATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGV 101

[Close]
BLAST of Cucsat.G13121 vs. ExPASy TrEMBL
Match: A0A6J1F3P2 (uncharacterized protein LOC111441837 OS=Cucurbita moschata OX=3662 GN=LOC111441837 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.95e-24
Identity = 62/109 (56.88%), Postives = 70/109 (64.22%), Query Frame = 0 

Query: 3   MRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTP--------- 62
           MRLQ  FLR NI  +PS   + ATF+T+ PPIS         S QLR+RTP         
Sbjct: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISY--------SWQLRVRTPKLTLPPLES 60

Query: 63  -RRKFNVSATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGL 101
            R K  VSAT  PD RPLDLTE+NVRQAL +AR ELAQIFD SVGITG+
Sbjct: 61  RRPKLVVSATAAPDNRPLDLTEDNVRQALDDARAELAQIFDASVGITGV 101

[Close]
BLAST of Cucsat.G13121 vs. ExPASy TrEMBL
Match: A0A6J1CS17 (uncharacterized protein LOC111014231 OS=Momordica charantia OX=3673 GN=LOC111014231 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.02e-14
Identity = 53/107 (49.53%), Postives = 64/107 (59.81%), Query Frame = 0 

Query: 3   MRLQAPFL-RPNIVSTPSLPL------IAATFYTAPPPISKFR-MPETSSSLQLRMRTPR 62
           MR  APF    NI S+P  P       +A   +  PP  S  R +P   S L+ R    R
Sbjct: 1   MRSAAPFPGHHNIASSPPPPPTPTPTPVAVAAFLTPPSRSNLRPLPAAHSRLESR----R 60

Query: 63  RKFNVSATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGL 101
            K +V A  VP+QRPLDLTEENV +AL +AR+ELAQIFD SVGITG+
Sbjct: 61  SKLSVWAAAVPNQRPLDLTEENVIEALVDARLELAQIFDASVGITGV 103

The following BLAST results are available for this feature:
BLAST of Cucsat.G13121 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G13121 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136506.16.26e-6199.01uncharacterized protein LOC101205788 [Cucumis sativus] >KGN59186.1 hypothetical ... [more]
XP_008442900.11.54e-4987.88PREDICTED: uncharacterized protein LOC103486663 [Cucumis melo][more]
XP_038903952.18.27e-3670.87uncharacterized protein LOC120090394 isoform X2 [Benincasa hispida][more]
XP_038903951.19.29e-3670.87uncharacterized protein LOC120090394 isoform X1 [Benincasa hispida][more]
KAG6580734.13.13e-2558.72hypothetical protein SDJN03_20736, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cucsat.G13121 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGR73.03e-6199.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778420 PE=4 SV=1[more]
A0A1S3B7J17.46e-5087.88uncharacterized protein LOC103486663 OS=Cucumis melo OX=3656 GN=LOC103486663 PE=... [more]
A0A6J1J1966.09e-2560.58uncharacterized protein LOC111481776 OS=Cucurbita maxima OX=3661 GN=LOC111481776... [more]
A0A6J1F3P26.95e-2456.88uncharacterized protein LOC111441837 OS=Cucurbita moschata OX=3662 GN=LOC1114418... [more]
A0A6J1CS176.02e-1449.53uncharacterized protein LOC111014231 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 69..148
e-value: 1.8E-16
score: 62.0
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 74..147
NoneNo IPR availablePANTHERPTHR36018OS09G0481800 PROTEINcoord: 25..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G13121.T1Cucsat.G13121.T1mRNA
Cucsat.G13121.T2Cucsat.G13121.T2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098869 cellular oxidant detoxification
molecular_function GO:0051920 peroxiredoxin activity