Cucsat.G12901 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12901
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Gibberellin-regulated family protein
Location	ctg1838: 6812205 .. 6813195 (-)
RNA-Seq Expression	Cucsat.G12901
Synteny	Cucsat.G12901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCAGAAAATGGATTATTCCCTTCCGCCACGAAAATTTTCAAAAATTAAAAAAGAAAAGTCCCCTACTTTCTCATTCACCTAACACTCTAACACCTCCCCCCCTTTATATTTACTATAAATATCAACACTTCCTTTCTCATTTGCATTGCATTTTCTAAGTCGTCTTTCCTTTCTTTCTTTCTTCATCTTAATACCATGGCACTTCCTAAAATCATCGTCTGTCTTCTTGCGTCCTCTCTTCTCGTTCTTTGTTTTGTTGAAGCTGATGATCAGATGGTATAAGTTCTAATTTCATATACTCAATTAAACGTGTTTTTAATCCTACAAGAATCATTCTCATATTCCAATTGTTTTCAGGTCGTTGGTGTTGCAGCTAGTAGTCCCACTAAGACTCAAAATATTGGTAAGTTATTGTTATTTGGGATTATTTATTTATTTGAAGTATTTTGATTGTGAAATTTGTGAAAATTAATTATATGTATATTAGATTGTGGAGGAGCTTGTGCATCGAGGTGCAAATTATCATCAAGGCCGAACTTGTGCCATAGGGCATGTGGGACGTGCTGTGCACGTTGCAGCTGTGTGCCGCCGGGCACTTCCGGAAACTATGAGGCTTGCCCTTGCTACGCTACACTGACCACTCACGGCGGCCGGCGAAAGTGTCCTTAAGTTATTTCATTGTTAAAAAAGATACTGTGTTGAAAAGTCCGTCATAATCTCTCCCATGCAAAAGTCTGTATTCTGTTCTGTTTTTGTTCATCGTCATCTTCAACGTTTATAAGCTTTGATTTATAAATAAAAATTTGAAGGAGTTGTTTAATATAATGAATTATTTATCTAAAATAAAATTTCTATATGTCCCCTTTATTTTGTTTGTTTTTCTTTTCCCAGTTATGTGAGTGAATATACAAAACAAATTATGAATTATATTCTTGTACGTTACAAGTGTTGTTTTATTTGTGTGTGTAATAAAGCTACAATTAATTGA

Coding sequence (CDS)

ATGGCACTTCCTAAAATCATCGTCTGTCTTCTTGCGTCCTCTCTTCTCGTTCTTTGTTTTGTTGAAGCTGATGATCAGATGGTCGTTGGTGTTGCAGCTAGTAGTCCCACTAAGACTCAAAATATTGATTGTGGAGGAGCTTGTGCATCGAGGTGCAAATTATCATCAAGGCCGAACTTGTGCCATAGGGCATGTGGGACGTGCTGTGCACGTTGCAGCTGTGTGCCGCCGGGCACTTCCGGAAACTATGAGGCTTGCCCTTGCTACGCTACACTGACCACTCACGGCGGCCGGCGAAAGTGTCCTTAA

Protein sequence

MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNLCHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP

Homology

[Close]

BLAST of Cucsat.G12901 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.3e-28
Identity = 62/104 (59.62%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEA--DDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRP 60
           MA+ K +   L  SLL+L  V++   DQ+     + +    + IDCGGACA+RC+LSSRP
Sbjct: 1   MAISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRP 60

Query: 61  NLCHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 103
            LC+RACGTCCARC+CVPPGTSGN E CPCYA+LTTHG +RKCP
Sbjct: 61  RLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of Cucsat.G12901 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-27
Identity = 63/102 (61.76%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           MA+ ++++  L  SLLVL FV AD  MV      +      IDC   C  RC LSSRPNL
Sbjct: 1   MAVFRVLLASLLISLLVLDFVHAD--MV------TSNDAPKIDCNSRCQERCSLSSRPNL 60

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 103
           CHRACGTCCARC+CV PGTSGNY+ CPCY +LTTHGGRRKCP
Sbjct: 61  CHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Cucsat.G12901 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-27
Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           MA+ K ++  L  SLLVL  V+AD    V  +       + IDCG AC +RC+LS RP L
Sbjct: 1   MAISKALIASLLISLLVLQLVQAD----VENSQKKNGYAKKIDCGSACVARCRLSRRPRL 60

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 103
           CHRACGTCC RC+CVPPGT GNY+ C CYA+LTTHGGRRKCP
Sbjct: 61  CHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Cucsat.G12901 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.7e-21
Identity = 55/102 (53.92%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           + L  IIVCL    L     V A D   VG           IDCGG C  RC  SSR  L
Sbjct: 8   LVLLLIIVCLTTYEL----HVHAADGAKVGEG------VVKIDCGGRCKDRCSKSSRTKL 67

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 103
           C RAC +CC+RC+CVPPGTSGN   CPCYA++TTHGGR KCP
Sbjct: 68  CLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Cucsat.G12901 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           + L  I+ CL    L V      D Q+  GV          IDCGG C  RC  SSRPNL
Sbjct: 8   LVLLLILFCLTTFELHV--HAAEDSQVGEGVV--------KIDCGGRCKGRCSKSSRPNL 67

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 103
           C RAC +CC RC+CVPPGT+GN+  CPCYA++TT GGR KCP
Sbjct: 68  CLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Cucsat.G12901 vs. NCBI nr
Match: XP_004136382.1 (gibberellin-regulated protein 11 [Cucumis sativus] >KGN60035.1 hypothetical protein Csa_001480 [Cucumis sativus])

HSP 1 Score: 212 bits (540), Expect = 2.18e-69
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL
Sbjct: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102
           CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP
Sbjct: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102

[Close]

BLAST of Cucsat.G12901 vs. NCBI nr
Match: XP_008466478.1 (PREDICTED: gibberellin-regulated protein 11-like [Cucumis melo] >KAA0063284.1 gibberellin-regulated protein 11-like [Cucumis melo var. makuwa] >TYK31491.1 gibberellin-regulated protein 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (456), Expect = 1.34e-56
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           MA+PKII CL+A SLLVLCFVEADD MVVGVAAS PT TQNI+CGGACASRCKLSSRPNL
Sbjct: 1   MAIPKIIPCLVAMSLLVLCFVEADD-MVVGVAAS-PTLTQNINCGGACASRCKLSSRPNL 60

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102
           C RACGTCCARCSCVPPGTSGNY ACPCYA LTTHGGRRKCP
Sbjct: 61  CKRACGTCCARCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]

BLAST of Cucsat.G12901 vs. NCBI nr
Match: XP_038899682.1 (gibberellin-regulated protein 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 145 bits (366), Expect = 8.26e-43
Identity = 73/101 (72.28%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 4   PKIIVCLLASSLLVLCFVEADDQM--VVGVAASSPTKTQNIDCGGACASRCKLSSRPNLC 63
           P II  L  SS LV   VEA+  +  + GVA ++  K QNIDCGGACASRCKLSSRPNLC
Sbjct: 6   PLIIAYLFISSFLVHTLVEANKMVNSIDGVATNT-AKIQNIDCGGACASRCKLSSRPNLC 65

Query: 64  HRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102
            RACGTCCARCSCVPPGTSG Y+ACPCYA++TTHGGRRKCP
Sbjct: 66  KRACGTCCARCSCVPPGTSGGYDACPCYASMTTHGGRRKCP 105

[Close]

BLAST of Cucsat.G12901 vs. NCBI nr
Match: XP_030481385.1 (snakin-2 [Cannabis sativa] >KAF4373060.1 hypothetical protein F8388_019242 [Cannabis sativa] >KAF4394843.1 hypothetical protein G4B88_002720 [Cannabis sativa])

HSP 1 Score: 144 bits (364), Expect = 1.52e-42
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           MAL K+++  L  SLLVL  VEADD   +G  A    K ++IDCGG+CA+RC+LSSRP L
Sbjct: 1   MALSKVLIISLLFSLLVLNIVEADDTTAIGDVAEGSLKKKSIDCGGSCAARCRLSSRPRL 60

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102
           C RACGTCC RC+CVPPGT+GN E CPCYA +TTHGGRRKCP
Sbjct: 61  CKRACGTCCQRCNCVPPGTAGNLEVCPCYANMTTHGGRRKCP 102

[Close]

BLAST of Cucsat.G12901 vs. NCBI nr
Match: XP_022940222.1 (gibberellin-regulated protein 1-like [Cucurbita moschata])

HSP 1 Score: 144 bits (362), Expect = 3.46e-42
Identity = 72/102 (70.59%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 3   LPKIIVCLLASSLLVLCFVEADDQM--VVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 62
           L K +V  +  SLLV+  V AD+++  + GVAA  P   Q+IDCGGACASRCKLSSRPNL
Sbjct: 6   LSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAH-PANIQSIDCGGACASRCKLSSRPNL 65

Query: 63  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102
           C RACGTCCARC+CVPPGTSG YE CPCYA+LTTHGGRRKCP
Sbjct: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Cucsat.G12901 vs. ExPASy TrEMBL
Match: A0A0A0LDK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872170 PE=3 SV=1)

HSP 1 Score: 212 bits (540), Expect = 1.05e-69
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL
Sbjct: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102
           CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP
Sbjct: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102

[Close]

BLAST of Cucsat.G12901 vs. ExPASy TrEMBL
Match: A0A5D3E7E4 (Gibberellin-regulated protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008070 PE=3 SV=1)

HSP 1 Score: 180 bits (456), Expect = 6.48e-57
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           MA+PKII CL+A SLLVLCFVEADD MVVGVAAS PT TQNI+CGGACASRCKLSSRPNL
Sbjct: 1   MAIPKIIPCLVAMSLLVLCFVEADD-MVVGVAAS-PTLTQNINCGGACASRCKLSSRPNL 60

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102
           C RACGTCCARCSCVPPGTSGNY ACPCYA LTTHGGRRKCP
Sbjct: 61  CKRACGTCCARCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]

BLAST of Cucsat.G12901 vs. ExPASy TrEMBL
Match: A0A1S3CSM7 (gibberellin-regulated protein 11-like OS=Cucumis melo OX=3656 GN=LOC103503872 PE=3 SV=1)

HSP 1 Score: 180 bits (456), Expect = 6.48e-57
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           MA+PKII CL+A SLLVLCFVEADD MVVGVAAS PT TQNI+CGGACASRCKLSSRPNL
Sbjct: 1   MAIPKIIPCLVAMSLLVLCFVEADD-MVVGVAAS-PTLTQNINCGGACASRCKLSSRPNL 60

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102
           C RACGTCCARCSCVPPGTSGNY ACPCYA LTTHGGRRKCP
Sbjct: 61  CKRACGTCCARCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]

BLAST of Cucsat.G12901 vs. ExPASy TrEMBL
Match: A0A7J6FTA6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019242 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 7.36e-43
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           MAL K+++  L  SLLVL  VEADD   +G  A    K ++IDCGG+CA+RC+LSSRP L
Sbjct: 1   MALSKVLIISLLFSLLVLNIVEADDTTAIGDVAEGSLKKKSIDCGGSCAARCRLSSRPRL 60

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102
           C RACGTCC RC+CVPPGT+GN E CPCYA +TTHGGRRKCP
Sbjct: 61  CKRACGTCCQRCNCVPPGTAGNLEVCPCYANMTTHGGRRKCP 102

[Close]

BLAST of Cucsat.G12901 vs. ExPASy TrEMBL
Match: A0A803QWK0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 7.36e-43
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MALPKIIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 60
           MAL K+++  L  SLLVL  VEADD   +G  A    K ++IDCGG+CA+RC+LSSRP L
Sbjct: 1   MALSKVLIISLLFSLLVLNIVEADDTTAIGDVAEGSLKKKSIDCGGSCAARCRLSSRPRL 60

Query: 61  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102
           C RACGTCC RC+CVPPGT+GN E CPCYA +TTHGGRRKCP
Sbjct: 61  CKRACGTCCQRCNCVPPGTAGNLEVCPCYANMTTHGGRRKCP 102

The following BLAST results are available for this feature:

BLAST of Cucsat.G12901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	4.3e-28	59.62	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
F4IQJ4	2.1e-27	61.76	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
P46689	3.7e-27	59.80	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
P46688	8.7e-21	53.92	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]
P46687	1.5e-20	51.96	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]

BLAST of Cucsat.G12901 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136382.1	2.18e-69	100.00	gibberellin-regulated protein 11 [Cucumis sativus] >KGN60035.1 hypothetical prot...	[more]
XP_008466478.1	1.34e-56	89.22	PREDICTED: gibberellin-regulated protein 11-like [Cucumis melo] >KAA0063284.1 gi...	[more]
XP_038899682.1	8.26e-43	72.28	gibberellin-regulated protein 1-like isoform X1 [Benincasa hispida]	[more]
XP_030481385.1	1.52e-42	65.69	snakin-2 [Cannabis sativa] >KAF4373060.1 hypothetical protein F8388_019242 [Cann...	[more]
XP_022940222.1	3.46e-42	70.59	gibberellin-regulated protein 1-like [Cucurbita moschata]	[more]

BLAST of Cucsat.G12901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDK8	1.05e-69	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872170 PE=3 SV=1	[more]
A0A5D3E7E4	6.48e-57	89.22	Gibberellin-regulated protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CSM7	6.48e-57	89.22	gibberellin-regulated protein 11-like OS=Cucumis melo OX=3656 GN=LOC103503872 PE...	[more]
A0A7J6FTA6	7.36e-43	65.69	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019242 PE=3 SV=1	[more]
A0A803QWK0	7.36e-43	65.69	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 43..102 e-value: 1.5E-21 score: 76.2
None	No IPR available	PANTHER	PTHR23201:SF67	SNAKIN-2-LIKE	coord: 6..102
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 6..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12901.T1	Cucsat.G12901.T1	mRNA